| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in SW 1271 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| CEP250 | centrosomal protein 250kDa | 0.053979 |
| DSCAM | Down syndrome cell adhesion molecule | 0.0534798 |
| ZNF292 | zinc finger protein 292 | 0.0477242 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0443928 |
| ARL15 | ADP-ribosylation factor-like 15 | 0.042733 |
| NUMA1 | nuclear mitotic apparatus protein 1 | 0.0425759 |
| SMAD3 | SMAD family member 3 | 0.0399361 |
| SMYD3 | SET and MYND domain containing 3 | 0.0397689 |
| RPL23 | ribosomal protein L23 | 0.0381949 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0378743 |
| SQSTM1 | sequestosome 1 | 0.0378014 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0375839 |
| PHC3 | polyhomeotic homolog 3 (Drosophila) | 0.0368363 |
| PRRC2B | proline-rich coiled-coil 2B | 0.0365994 |
| NCEH1 | neutral cholesterol ester hydrolase 1 | 0.0361465 |
| MPRIP | myosin phosphatase Rho interacting protein | 0.0360789 |
| GOLGB1 | golgin B1 | 0.0357933 |
| VMP1 | vacuole membrane protein 1 | 0.0346856 |
| POLR2A | polymerase (RNA) II (DNA directed) polypeptide A, 220kDa | 0.0338616 |
| TBC1D5 | TBC1 domain family, member 5 | 0.0322268 |
| ABL1 | ABL proto-oncogene 1, non-receptor tyrosine kinase | 0.0317624 |
| SPG7 | spastic paraplegia 7 (pure and complicated autosomal recessive) | 0.0306117 |
| BRD2 | bromodomain containing 2 | 0.029442 |
| SETD5 | SET domain containing 5 | 0.0293727 |
| NF1 | neurofibromin 1 | 0.0286612 |
| SON | SON DNA binding protein | 0.0285541 |
| ZNF609 | zinc finger protein 609 | 0.0280165 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0271642 |
| GLS2 | glutaminase 2 (liver, mitochondrial) | 0.0270005 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0269167 |
| APLP2 | amyloid beta (A4) precursor-like protein 2 | 0.0269156 |
| DYNC2H1 | dynein, cytoplasmic 2, heavy chain 1 | 0.0267449 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | 0.0265911 |
| TBC1D22A | TBC1 domain family, member 22A | 0.0264746 |
| ARHGEF12 | Rho guanine nucleotide exchange factor (GEF) 12 | 0.0263743 |
| TENT2 | terminal nucleotidyltransferase 2 | 0.0262963 |
| ZBTB25 | zinc finger and BTB domain containing 25 | 0.0258033 |
| STK24 | serine/threonine kinase 24 | 0.025643 |
| RALY | RALY heterogeneous nuclear ribonucleoprotein | 0.0247065 |
| SREK1 | splicing regulatory glutamine/lysine-rich protein 1 | 0.0246475 |
| CELF1 | CUGBP, Elav-like family member 1 | 0.0243385 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0242985 |
| ARHGAP26 | Rho GTPase activating protein 26 | 0.0240793 |
| UBR4 | ubiquitin protein ligase E3 component n-recognin 4 | 0.0238105 |
| SPTAN1 | spectrin, alpha, non-erythrocytic 1 | 0.0236624 |
| YBX3 | Y box binding protein 3 | 0.0236295 |
| IARS1 | isoleucyl-tRNA synthetase 1 | 0.0234336 |
| FNIP1 | folliculin interacting protein 1 | 0.0232976 |
| TRA2A | transformer 2 alpha homolog (Drosophila) | 0.023284 |
| NCOA6 | nuclear receptor coactivator 6 | 0.0230271 |
| GARS1 | glycyl-tRNA synthetase 1 | 0.0228322 |
| RABGAP1 | RAB GTPase activating protein 1 | 0.02269 |
| BIRC3 | baculoviral IAP repeat containing 3 | 0.022596 |
| NUP58 | nucleoporin 58 | 0.0225541 |
| EIF1 | eukaryotic translation initiation factor 1 | 0.0225298 |
| SLC6A4 | solute carrier family 6 (neurotransmitter transporter), member 4 | 0.0223834 |
| ERCC6L2 | excision repair cross-complementation group 6-like 2 | 0.0220944 |
| FBXW7 | F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase | 0.0219896 |
| PPP6R3 | protein phosphatase 6, regulatory subunit 3 | 0.0217502 |
| RAD18 | RAD18 E3 ubiquitin protein ligase | 0.0216746 |
| RB1CC1 | RB1-inducible coiled-coil 1 | 0.0216312 |
| ATM | ATM serine/threonine kinase | 0.0214373 |
| NAMPT | nicotinamide phosphoribosyltransferase | 0.0213236 |
| EXOC6B | exocyst complex component 6B | 0.0212864 |
| CRIM1 | cysteine rich transmembrane BMP regulator 1 (chordin-like) | 0.0212737 |
| YAP1 | Yes-associated protein 1 | 0.0207203 |
| RBM39 | RNA binding motif protein 39 | 0.0206333 |
| ERGIC3 | ERGIC and golgi 3 | 0.0204856 |
| RALGAPA2 | Ral GTPase activating protein, alpha subunit 2 (catalytic) | 0.0204 |
| ZFAND6 | zinc finger, AN1-type domain 6 | 0.020378 |
| MAPK14 | mitogen-activated protein kinase 14 | 0.0203642 |
| GNS | glucosamine (N-acetyl)-6-sulfatase | 0.0200753 |
| CCDC14 | coiled-coil domain containing 14 | 0.0200631 |
| TM9SF4 | transmembrane 9 superfamily protein member 4 | 0.0200593 |
| BCAS3 | breast carcinoma amplified sequence 3 | 0.0196816 |
| HERC1 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 | 0.0195442 |
| VTI1A | vesicle transport through interaction with t-SNAREs 1A | 0.0194472 |
| TXNIP | thioredoxin interacting protein | 0.0194354 |
| ARID1B | AT rich interactive domain 1B (SWI1-like) | 0.0193687 |
| BIRC6 | baculoviral IAP repeat containing 6 | 0.0193403 |
| AUH | AU RNA binding protein/enoyl-CoA hydratase | 0.0193317 |
| C2ORF42 | chromosome 2 open reading frame 42 | 0.0193245 |
| KDM6A | lysine (K)-specific demethylase 6A | 0.0193223 |
| DDX39B | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B | 0.0192492 |
| PRRC2C | proline-rich coiled-coil 2C | 0.0191655 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | 0.0191595 |
| RAPGEF6 | Rap guanine nucleotide exchange factor (GEF) 6 | 0.0191505 |
| KTN1 | kinectin 1 (kinesin receptor) | 0.0191163 |
| RBM33 | RNA binding motif protein 33 | 0.0191088 |
| KIAA1958 | KIAA1958 | 0.019076 |
| OSMR | oncostatin M receptor | 0.0190541 |
| ALS2 | amyotrophic lateral sclerosis 2 (juvenile) | 0.0189865 |
| HLA-B | major histocompatibility complex, class I, B | 0.0189544 |
| PRPF8 | pre-mRNA processing factor 8 | 0.0189069 |
| SBF2 | SET binding factor 2 | 0.0188294 |
| MTMR3 | myotubularin related protein 3 | 0.018815 |
| EPS8 | epidermal growth factor receptor pathway substrate 8 | 0.0187101 |
| NFKBIZ | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta | 0.0186792 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0183163 |
| BABAM2 | BRISC and BRCA1 A complex member 2 | 0.0182585 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.302427 |
| VIM | vimentin | -0.192197 |
| LDHA | lactate dehydrogenase A | -0.119869 |
| TMSB10 | thymosin beta 10 | -0.105778 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.0921619 |
| PTMA | prothymosin, alpha | -0.0844434 |
| ERC2 | ELKS/RAB6-interacting/CAST family member 2 | -0.0700621 |
| ANXA2 | annexin A2 | -0.0619655 |
| PHLDB2 | pleckstrin homology-like domain, family B, member 2 | -0.0519611 |
| GNAS | GNAS complex locus | -0.0517565 |
| HILPDA | hypoxia inducible lipid droplet-associated | -0.0513346 |
| CANX | calnexin | -0.0512338 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.0475505 |
| PRKCA | protein kinase C, alpha | -0.0469476 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.0461338 |
| HMGA2 | high mobility group AT-hook 2 | -0.0452837 |
| CALM2 | calmodulin 2 (phosphorylase kinase, delta) | -0.0433468 |
| BASP1 | brain abundant, membrane attached signal protein 1 | -0.0415534 |
| ANXA1 | annexin A1 | -0.0411738 |
| ITGA2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) | -0.0377176 |
| IGF2 | insulin-like growth factor 2 | -0.036845 |
| CD44 | CD44 molecule (Indian blood group) | -0.0361872 |
| SLC38A2 | solute carrier family 38, member 2 | -0.0329864 |
| CAV1 | caveolin 1, caveolae protein, 22kDa | -0.0325125 |
| ARPC2 | actin related protein 2/3 complex, subunit 2, 34kDa | -0.0321231 |
| KCNMA1 | potassium channel, calcium activated large conductance subfamily M alpha, member 1 | -0.0313681 |
| RPLP0 | ribosomal protein, large, P0 | -0.0308219 |
| IER3 | immediate early response 3 | -0.0305902 |
| ERO1A | endoplasmic reticulum oxidoreductase 1 alpha | -0.0303914 |
| TANC2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | -0.0300636 |
| MAP4 | microtubule-associated protein 4 | -0.0293905 |
| SPOCK1 | sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 | -0.0291098 |
| NDRG1 | N-myc downstream regulated 1 | -0.0288556 |
| ENO1 | enolase 1, (alpha) | -0.028854 |
| SEPTIN7 | septin 7 | -0.0286876 |
| FTH1 | ferritin, heavy polypeptide 1 | -0.0285172 |
| VCL | vinculin | -0.028468 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | -0.0279151 |
| MACF1 | microtubule-actin crosslinking factor 1 | -0.0277984 |
| PITPNC1 | phosphatidylinositol transfer protein, cytoplasmic 1 | -0.0274307 |
| SEMA3A | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A | -0.0272979 |
| VDAC1 | voltage-dependent anion channel 1 | -0.0271702 |
| RPS3 | ribosomal protein S3 | -0.027036 |
| TPM4 | tropomyosin 4 | -0.0269947 |
| RAI14 | retinoic acid induced 14 | -0.0266356 |
| NPAS2 | neuronal PAS domain protein 2 | -0.0265032 |
| BPTF | bromodomain PHD finger transcription factor | -0.0261716 |
| ZBTB20 | zinc finger and BTB domain containing 20 | -0.0260672 |
| RPS8 | ribosomal protein S8 | -0.0259903 |
| CD55 | CD55 molecule, decay accelerating factor for complement (Cromer blood group) | -0.0256246 |
| SH3KBP1 | SH3-domain kinase binding protein 1 | -0.0255267 |
| HSPH1 | heat shock 105kDa/110kDa protein 1 | -0.0251956 |
| MYO9A | myosin IXA | -0.0251772 |
| ITGA6 | integrin, alpha 6 | -0.025003 |
| S100A10 | S100 calcium binding protein A10 | -0.0249095 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | -0.0248683 |
| NAP1L1 | nucleosome assembly protein 1-like 1 | -0.0245712 |
| ADM | adrenomedullin | -0.0241347 |
| UBB | ubiquitin B | -0.0236992 |
| RAI1 | retinoic acid induced 1 | -0.0236728 |
| DST | dystonin | -0.0236332 |
| DNER | delta/notch-like EGF repeat containing | -0.0235883 |
| ABL2 | ABL proto-oncogene 2, non-receptor tyrosine kinase | -0.0235693 |
| RHEB | Ras homolog enriched in brain | -0.023457 |
| WWOX | WW domain containing oxidoreductase | -0.0233154 |
| MBNL1 | muscleblind-like splicing regulator 1 | -0.0232714 |
| BTG1 | B-cell translocation gene 1, anti-proliferative | -0.0232442 |
| CENPF | centromere protein F, 350/400kDa | -0.0231526 |
| TBL1XR1 | transducin (beta)-like 1 X-linked receptor 1 | -0.022724 |
| NT5E | 5'-nucleotidase, ecto (CD73) | -0.0227182 |
| IPO7 | importin 7 | -0.022649 |
| NUCKS1 | nuclear casein kinase and cyclin-dependent kinase substrate 1 | -0.0226343 |
| CFH | complement factor H | -0.0224462 |
| YWHAB | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta | -0.0224223 |
| PNRC1 | proline-rich nuclear receptor coactivator 1 | -0.0222623 |
| PARD3 | par-3 family cell polarity regulator | -0.0220388 |
| IRF2BP2 | interferon regulatory factor 2 binding protein 2 | -0.0219089 |
| LMAN1 | lectin, mannose-binding, 1 | -0.0218525 |
| PODXL | podocalyxin-like | -0.0217978 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | -0.0217049 |
| TUBA1B | tubulin, alpha 1b | -0.0216323 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.0214722 |
| SERPINE2 | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 | -0.0213779 |
| PLOD2 | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 | -0.0212941 |
| MAP3K2 | mitogen-activated protein kinase kinase kinase 2 | -0.021282 |
| CALR | calreticulin | -0.0211634 |
| GNB1 | guanine nucleotide binding protein (G protein), beta polypeptide 1 | -0.0211558 |
| RBPJ | recombination signal binding protein for immunoglobulin kappa J region | -0.0209528 |
| THBS1 | thrombospondin 1 | -0.0208748 |
| SPDL1 | spindle apparatus coiled-coil protein 1 | -0.0206337 |
| SRGAP1 | SLIT-ROBO Rho GTPase activating protein 1 | -0.0203764 |
| GPC6 | glypican 6 | -0.0202597 |
| CAVIN1 | caveolae associated protein 1 | -0.0201976 |
| PFN1 | profilin 1 | -0.0201333 |
| CCAR1 | cell division cycle and apoptosis regulator 1 | -0.0196878 |
| BAIAP2L1 | BAI1-associated protein 2-like 1 | -0.0195984 |
| TRIO | trio Rho guanine nucleotide exchange factor | -0.0195873 |
| PTK2 | protein tyrosine kinase 2 | -0.0194137 |
| ARHGAP18 | Rho GTPase activating protein 18 | -0.01901 |
| TBCA | tubulin folding cofactor A | -0.0189264 |
