| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in SW 900 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_SW 900 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| CYP1B1 | cytochrome P450, family 1, subfamily B, polypeptide 1 | 0.231631 |
| PTGS2 | prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) | 0.168355 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0855625 |
| CXCL8 | chemokine (C-X-C motif) ligand 8 | 0.082223 |
| NRG1 | neuregulin 1 | 0.0672281 |
| EXT1 | exostosin glycosyltransferase 1 | 0.0643122 |
| NAMPT | nicotinamide phosphoribosyltransferase | 0.0620613 |
| TRIO | trio Rho guanine nucleotide exchange factor | 0.0565796 |
| TMEM165 | transmembrane protein 165 | 0.0506957 |
| HIPK2 | homeodomain interacting protein kinase 2 | 0.0492699 |
| NPM1 | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | 0.0476849 |
| BIRC6 | baculoviral IAP repeat containing 6 | 0.0459943 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0448456 |
| OGA | O-GlcNAcase | 0.0445258 |
| P4HB | prolyl 4-hydroxylase, beta polypeptide | 0.043197 |
| RICTOR | RPTOR independent companion of MTOR, complex 2 | 0.0426787 |
| UBR5 | ubiquitin protein ligase E3 component n-recognin 5 | 0.0425377 |
| SMOX | spermine oxidase | 0.0415576 |
| TMED9 | transmembrane emp24 protein transport domain containing 9 | 0.0404644 |
| EFNA5 | ephrin-A5 | 0.0395705 |
| PLOD2 | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 | 0.0390847 |
| TMEM263 | transmembrane protein 263 | 0.0388067 |
| GFPT1 | glutamine--fructose-6-phosphate transaminase 1 | 0.038317 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0374432 |
| AOPEP | aminopeptidase O (putative) | 0.0369424 |
| PRRC2C | proline-rich coiled-coil 2C | 0.0358552 |
| AKAP9 | A kinase (PRKA) anchor protein 9 | 0.0357703 |
| AHRR | aryl-hydrocarbon receptor repressor | 0.0341686 |
| DOCK5 | dedicator of cytokinesis 5 | 0.0340064 |
| SEC31A | SEC31 homolog A (S. cerevisiae) | 0.0338652 |
| VMP1 | vacuole membrane protein 1 | 0.0336978 |
| FAM20C | family with sequence similarity 20, member C | 0.03363 |
| AEBP2 | AE binding protein 2 | 0.0334077 |
| CD109 | CD109 molecule | 0.0331472 |
| STC2 | stanniocalcin 2 | 0.0330807 |
| RUNX2 | runt-related transcription factor 2 | 0.0330551 |
| TBC1D8 | TBC1 domain family, member 8 (with GRAM domain) | 0.0328971 |
| NIPBL | Nipped-B homolog (Drosophila) | 0.0327201 |
| HIVEP2 | human immunodeficiency virus type I enhancer binding protein 2 | 0.0325838 |
| ETV6 | ets variant 6 | 0.0319465 |
| VPS13B | vacuolar protein sorting 13 homolog B (yeast) | 0.0318814 |
| GPRC5A | G protein-coupled receptor, class C, group 5, member A | 0.0317764 |
| KMT2C | lysine (K)-specific methyltransferase 2C | 0.0316086 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | 0.0315573 |
| HDLBP | high density lipoprotein binding protein | 0.0313368 |
| TENT2 | terminal nucleotidyltransferase 2 | 0.0312815 |
| RBM39 | RNA binding motif protein 39 | 0.0311659 |
| ARHGEF12 | Rho guanine nucleotide exchange factor (GEF) 12 | 0.0308762 |
| SUCO | SUN domain containing ossification factor | 0.0307744 |
| TBC1D22A | TBC1 domain family, member 22A | 0.0305757 |
| HNRNPC | heterogeneous nuclear ribonucleoprotein C (C1/C2) | 0.0305505 |
| FBXW11 | F-box and WD repeat domain containing 11 | 0.0303459 |
| FRY | furry homolog (Drosophila) | 0.0302895 |
| ARID4B | AT rich interactive domain 4B (RBP1-like) | 0.0300184 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0294438 |
| SOS1 | son of sevenless homolog 1 (Drosophila) | 0.0290134 |
| MCTP2 | multiple C2 domains, transmembrane 2 | 0.0288257 |
| SEC23A | Sec23 homolog A (S. cerevisiae) | 0.0285074 |
| CADM1 | cell adhesion molecule 1 | 0.0284097 |
| CCNL1 | cyclin L1 | 0.0283642 |
| HELZ | helicase with zinc finger | 0.02786 |
| RPS21 | ribosomal protein S21 | 0.0276252 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | 0.0275969 |
| GLIS3 | GLIS family zinc finger 3 | 0.0275083 |
| HERC4 | HECT and RLD domain containing E3 ubiquitin protein ligase 4 | 0.0274513 |
| NEK7 | NIMA-related kinase 7 | 0.0273776 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0271408 |
| UBR4 | ubiquitin protein ligase E3 component n-recognin 4 | 0.0270713 |
| RABGEF1 | RAB guanine nucleotide exchange factor (GEF) 1 | 0.0267604 |
| MAPK8 | mitogen-activated protein kinase 8 | 0.0267241 |
| RAB1A | RAB1A, member RAS oncogene family | 0.0267101 |
| CPEB4 | cytoplasmic polyadenylation element binding protein 4 | 0.0264879 |
| DSCAM | Down syndrome cell adhesion molecule | 0.026134 |
| FNBP1 | formin binding protein 1 | 0.0254762 |
| UBE2H | ubiquitin-conjugating enzyme E2H | 0.0253769 |
| DENND5B | DENN/MADD domain containing 5B | 0.0250945 |
| RASSF8 | Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 | 0.0250825 |
| COG6 | component of oligomeric golgi complex 6 | 0.0249869 |
| CRIM1 | cysteine rich transmembrane BMP regulator 1 (chordin-like) | 0.0249418 |
| AHR | aryl hydrocarbon receptor | 0.0247919 |
| VEGFA | vascular endothelial growth factor A | 0.0247898 |
| ZCCHC7 | zinc finger, CCHC domain containing 7 | 0.0247785 |
| GOLT1B | golgi transport 1B | 0.0245921 |
| BASP1 | brain abundant, membrane attached signal protein 1 | 0.024581 |
| ACBD3 | acyl-CoA binding domain containing 3 | 0.0245132 |
| ASAP1 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 | 0.0241671 |
| SOD2 | superoxide dismutase 2, mitochondrial | 0.0240956 |
| PRKCA | protein kinase C, alpha | 0.0240289 |
| YBX3 | Y box binding protein 3 | 0.0239881 |
| LAMB3 | laminin, beta 3 | 0.0239597 |
| TTC3 | tetratricopeptide repeat domain 3 | 0.0237333 |
| WDR26 | WD repeat domain 26 | 0.0236883 |
| POLR2A | polymerase (RNA) II (DNA directed) polypeptide A, 220kDa | 0.0236372 |
| KDM5A | lysine (K)-specific demethylase 5A | 0.0236186 |
| CDC73 | cell division cycle 73 | 0.0234537 |
| PMM2 | phosphomannomutase 2 | 0.0234527 |
| SHB | Src homology 2 domain containing adaptor protein B | 0.0234297 |
| DHRS3 | dehydrogenase/reductase (SDR family) member 3 | 0.0234104 |
| PPP6R3 | protein phosphatase 6, regulatory subunit 3 | 0.0232887 |
| CARD16 | caspase recruitment domain family, member 16 | 0.0232592 |
| Symbol | Name | Standardized Value |
|---|---|---|
| FN1 | fibronectin 1 | -0.221455 |
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.188878 |
| ASPH | aspartate beta-hydroxylase | -0.147153 |
| VIM | vimentin | -0.116338 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | -0.0829238 |
| ENO1 | enolase 1, (alpha) | -0.0826066 |
| S100A6 | S100 calcium binding protein A6 | -0.0676048 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | -0.0661592 |
| FTH1 | ferritin, heavy polypeptide 1 | -0.0637959 |
| FTL | ferritin, light polypeptide | -0.0572332 |
| PLIN2 | perilipin 2 | -0.0495898 |
| CENPF | centromere protein F, 350/400kDa | -0.0482427 |
| WWTR1 | WW domain containing transcription regulator 1 | -0.0476588 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0458956 |
| IGFBP3 | insulin-like growth factor binding protein 3 | -0.0452233 |
| RPS6 | ribosomal protein S6 | -0.0449274 |
| S100A10 | S100 calcium binding protein A10 | -0.0422091 |
| MKI67 | marker of proliferation Ki-67 | -0.0409376 |
| RPL37A | ribosomal protein L37a | -0.0401537 |
| RPS27 | ribosomal protein S27 | -0.0382714 |
| RPS29 | ribosomal protein S29 | -0.0374383 |
| MAP1B | microtubule-associated protein 1B | -0.0371385 |
| LTBP1 | latent transforming growth factor beta binding protein 1 | -0.0345275 |
| IFI27 | interferon, alpha-inducible protein 27 | -0.0335022 |
| DCBLD2 | discoidin, CUB and LCCL domain containing 2 | -0.0327902 |
| RPL31 | ribosomal protein L31 | -0.0324328 |
| IFI6 | interferon, alpha-inducible protein 6 | -0.0321077 |
| PTMA | prothymosin, alpha | -0.0314295 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | -0.0313484 |
| RPS8 | ribosomal protein S8 | -0.0313246 |
| LGALS1 | lectin, galactoside-binding, soluble, 1 | -0.0307036 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0305216 |
| ITGA2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) | -0.0301142 |
| PKM | pyruvate kinase, muscle | -0.0301054 |
| KPNB1 | karyopherin (importin) beta 1 | -0.0297543 |
| PLCB1 | phospholipase C, beta 1 (phosphoinositide-specific) | -0.029213 |
| SVIL | supervillin | -0.0288452 |
| POTEF | POTE ankyrin domain family, member F | -0.0282333 |
| PITPNC1 | phosphatidylinositol transfer protein, cytoplasmic 1 | -0.0279328 |
| RPS14 | ribosomal protein S14 | -0.0275317 |
| B2M | beta-2-microglobulin | -0.0273917 |
| MBNL1 | muscleblind-like splicing regulator 1 | -0.0270516 |
| KTN1 | kinectin 1 (kinesin receptor) | -0.0245274 |
| RPS12 | ribosomal protein S12 | -0.0243993 |
| MUSK | muscle, skeletal, receptor tyrosine kinase | -0.0243515 |
| FDPS | farnesyl diphosphate synthase | -0.0243205 |
| TSC22D1 | TSC22 domain family, member 1 | -0.0241463 |
| PALLD | palladin, cytoskeletal associated protein | -0.0238446 |
| ISG15 | ISG15 ubiquitin-like modifier | -0.0238051 |
| YWHAB | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta | -0.0237593 |
| DDX60 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 | -0.0237389 |
| LDHA | lactate dehydrogenase A | -0.0237208 |
| IFIH1 | interferon induced with helicase C domain 1 | -0.0233022 |
| RSAD2 | radical S-adenosyl methionine domain containing 2 | -0.0231396 |
| SEPTIN7 | septin 7 | -0.0229836 |
| RPS2 | ribosomal protein S2 | -0.0227098 |
| ETV1 | ets variant 1 | -0.02234 |
| RACK1 | receptor for activated C kinase 1 | -0.0222152 |
| HSPB1 | heat shock 27kDa protein 1 | -0.0222099 |
| TPM4 | tropomyosin 4 | -0.0216619 |
| RPS27A | ribosomal protein S27a | -0.0216183 |
| IFITM1 | interferon induced transmembrane protein 1 | -0.0215875 |
| HSPD1 | heat shock 60kDa protein 1 (chaperonin) | -0.0214192 |
| ANXA2 | annexin A2 | -0.0208889 |
| STAT1 | signal transducer and activator of transcription 1, 91kDa | -0.0207919 |
| RPL37 | ribosomal protein L37 | -0.0204263 |
| FHL2 | four and a half LIM domains 2 | -0.0204186 |
| RPS24 | ribosomal protein S24 | -0.0199934 |
| RPS25 | ribosomal protein S25 | -0.019847 |
| MYO10 | myosin X | -0.0196813 |
| ROCK2 | Rho-associated, coiled-coil containing protein kinase 2 | -0.0194863 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | -0.0193322 |
| KCNMA1 | potassium channel, calcium activated large conductance subfamily M alpha, member 1 | -0.0192113 |
| TLN1 | talin 1 | -0.0190823 |
| ZKSCAN1 | zinc finger with KRAB and SCAN domains 1 | -0.0190054 |
| RPL38 | ribosomal protein L38 | -0.0189793 |
| RPLP1 | ribosomal protein, large, P1 | -0.0187427 |
| RAB10 | RAB10, member RAS oncogene family | -0.0184791 |
| VDAC1 | voltage-dependent anion channel 1 | -0.0184299 |
| SFRP1 | secreted frizzled-related protein 1 | -0.0182542 |
| TUBA1B | tubulin, alpha 1b | -0.0182109 |
| LAMB1 | laminin, beta 1 | -0.0180255 |
| PHC2 | polyhomeotic homolog 2 (Drosophila) | -0.0179747 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | -0.0178742 |
| NT5E | 5'-nucleotidase, ecto (CD73) | -0.017813 |
| RHOBTB3 | Rho-related BTB domain containing 3 | -0.0177321 |
| BPTF | bromodomain PHD finger transcription factor | -0.0176936 |
| PMAIP1 | phorbol-12-myristate-13-acetate-induced protein 1 | -0.0176488 |
| HILPDA | hypoxia inducible lipid droplet-associated | -0.0175492 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.0174488 |
| TMEM156 | transmembrane protein 156 | -0.0173905 |
| TRIP11 | thyroid hormone receptor interactor 11 | -0.0173026 |
| VCAN | versican | -0.0172197 |
| SLK | STE20-like kinase | -0.0171793 |
| RPL10A | ribosomal protein L10a | -0.0170509 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | -0.0169556 |
| CTSB | cathepsin B | -0.0169138 |
| SYNE2 | spectrin repeat containing, nuclear envelope 2 | -0.0168985 |
| AHNAK | AHNAK nucleoprotein | -0.0168917 |
| RPS13 | ribosomal protein S13 | -0.0167663 |
