Bestatin_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Bestatin perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Bestatin_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FLNB filamin B, beta 0.116639
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.10828
TMSB4X thymosin beta 4, X-linked 0.0967266
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0844641
EZR ezrin 0.0706199
LDHA lactate dehydrogenase A 0.0658999
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.061649
NAMPT nicotinamide phosphoribosyltransferase 0.0614206
TXNRD1 thioredoxin reductase 1 0.0560516
ADAM10 ADAM metallopeptidase domain 10 0.0546207
PKM pyruvate kinase, muscle 0.0527044
PYGB phosphorylase, glycogen; brain 0.0504181
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0491383
DSCAM Down syndrome cell adhesion molecule 0.0444812
RTN4 reticulon 4 0.0434611
ZNF292 zinc finger protein 292 0.0422131
NUP58 nucleoporin 58 0.0391931
ZNF217 zinc finger protein 217 0.0391418
PRELID2 PRELI domain containing 2 0.0382654
HSPA8 heat shock 70kDa protein 8 0.0378802
SQSTM1 sequestosome 1 0.0366569
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0364442
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0358939
RPS2 ribosomal protein S2 0.0356891
AHNAK AHNAK nucleoprotein 0.0344897
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0344344
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0343148
NCKAP1 NCK-associated protein 1 0.034269
TXNIP thioredoxin interacting protein 0.0335266
RPS4X ribosomal protein S4, X-linked 0.0331558
KDM3A lysine (K)-specific demethylase 3A 0.0329776
APP amyloid beta (A4) precursor protein 0.031591
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0298898
MXI1 MAX interactor 1, dimerization protein 0.029222
RACK1 receptor for activated C kinase 1 0.0289842
SMYD3 SET and MYND domain containing 3 0.0283556
MATR3 matrin 3 0.0282134
PLK2 polo-like kinase 2 0.0281599
CDC73 cell division cycle 73 0.027998
CAMTA1 calmodulin binding transcription activator 1 0.0276309
ZNF608 zinc finger protein 608 0.027503
RBM39 RNA binding motif protein 39 0.0269885
DUSP4 dual specificity phosphatase 4 0.026734
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 0.0254595
PDE4D phosphodiesterase 4D, cAMP-specific 0.0253275
SERINC1 serine incorporator 1 0.0249192
SPAG9 sperm associated antigen 9 0.0247706
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.024369
NACA nascent polypeptide-associated complex alpha subunit 0.0242646
PRRC2C proline-rich coiled-coil 2C 0.0235306
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0235039
CLTC clathrin, heavy chain (Hc) 0.0234622
UBQLN1 ubiquilin 1 0.0232718
EEF2 eukaryotic translation elongation factor 2 0.023158
ARRDC3 arrestin domain containing 3 0.0228216
PLPP3 phospholipid phosphatase 3 0.0224314
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0222675
TBC1D5 TBC1 domain family, member 5 0.0217737
NBAS neuroblastoma amplified sequence 0.0217449
TOP2B topoisomerase (DNA) II beta 180kDa 0.0215079
GARS1 glycyl-tRNA synthetase 1 0.0212708
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.0208971
PRPF38B pre-mRNA processing factor 38B 0.0208377
NCEH1 neutral cholesterol ester hydrolase 1 0.0207897
COG5 component of oligomeric golgi complex 5 0.0207175
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0207168
CCNL1 cyclin L1 0.0207131
CALU calumenin 0.0204163
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0203476
PAPOLA poly(A) polymerase alpha 0.0202772
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.0198508
ANKRD12 ankyrin repeat domain 12 0.019703
ELP2 elongator acetyltransferase complex subunit 2 0.0194378
YAP1 Yes-associated protein 1 0.0193895
FXR1 fragile X mental retardation, autosomal homolog 1 0.019375
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0193077
WAC WW domain containing adaptor with coiled-coil 0.0190033
OSBPL9 oxysterol binding protein-like 9 0.018748
ANKRD10 ankyrin repeat domain 10 0.018572
MORF4L2 mortality factor 4 like 2 0.018517
EIF1 eukaryotic translation initiation factor 1 0.0184115
SNX9 sorting nexin 9 0.0180063
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0179934
RPL23 ribosomal protein L23 0.0178937
CRY1 cryptochrome circadian clock 1 0.0178878
GSK3B glycogen synthase kinase 3 beta 0.0178138
ECT2 epithelial cell transforming 2 0.0177931
RBM33 RNA binding motif protein 33 0.0177622
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0177426
KLF6 Kruppel-like factor 6 0.0177159
RYBP RING1 and YY1 binding protein 0.0175073
EWSR1 EWS RNA-binding protein 1 0.0174571
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 0.0173986
DAPK3 death-associated protein kinase 3 0.0170072
LUC7L2 LUC7-like 2 (S. cerevisiae) 0.0169889
NCOR1 nuclear receptor corepressor 1 0.0168811
ATP9B ATPase, class II, type 9B 0.0168383
YEATS2 YEATS domain containing 2 0.0168152
PGK1 phosphoglycerate kinase 1 0.016738
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.01653

decreased expression

Symbol Name Standardized Value
PDE4B phosphodiesterase 4B, cAMP-specific -0.214055
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.204634
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.127368
FOXP1 forkhead box P1 -0.123609
CPED1 cadherin-like and PC-esterase domain containing 1 -0.117796
PTMA prothymosin, alpha -0.102583
HDAC9 histone deacetylase 9 -0.0801445
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0755582
BMP10 bone morphogenetic protein 10 -0.0730284
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0721295
DLG1 discs, large homolog 1 (Drosophila) -0.0716204
NBEA neurobeachin -0.0691325
SSBP2 single-stranded DNA binding protein 2 -0.0647198
NFIA nuclear factor I/A -0.0564448
VCL vinculin -0.0558144
EFNA5 ephrin-A5 -0.0550227
NAV2 neuron navigator 2 -0.054246
EVI5 ecotropic viral integration site 5 -0.0533145
CENPF centromere protein F, 350/400kDa -0.0531231
CAMKMT calmodulin-lysine N-methyltransferase -0.0531156
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0527945
SOX6 SRY (sex determining region Y)-box 6 -0.0520857
ENO2 enolase 2 (gamma, neuronal) -0.0487104
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0473584
MKI67 marker of proliferation Ki-67 -0.0463555
CUX1 cut-like homeobox 1 -0.0454944
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0448796
DIAPH3 diaphanous-related formin 3 -0.0446749
SMC4 structural maintenance of chromosomes 4 -0.0423657
ENOX1 ecto-NOX disulfide-thiol exchanger 1 -0.0415472
DPYD dihydropyrimidine dehydrogenase -0.0393909
PDE7B phosphodiesterase 7B -0.0390835
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 -0.0371375
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) -0.0366744
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0356953
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0347578
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0327189
TTC28 tetratricopeptide repeat domain 28 -0.0316611
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0311991
LPP LIM domain containing preferred translocation partner in lipoma -0.0309769
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0306753
NPAS2 neuronal PAS domain protein 2 -0.0299607
ZMYND8 zinc finger, MYND-type containing 8 -0.0299019
N4BP2L2 NEDD4 binding protein 2-like 2 -0.02981
GLI3 GLI family zinc finger 3 -0.0297269
CYB5B cytochrome b5 type B (outer mitochondrial membrane) -0.0293619
ANKRD11 ankyrin repeat domain 11 -0.0278971
BMP2K BMP2 inducible kinase -0.0276824
CRPPA CDP-L-ribitol pyrophosphorylase A -0.0276498
PFN1 profilin 1 -0.0274206
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0264089
RFC3 replication factor C (activator 1) 3, 38kDa -0.0263474
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0261174
PKP4 plakophilin 4 -0.025981
RPS6 ribosomal protein S6 -0.0257334
RPL35A ribosomal protein L35a -0.0252833
NEBL nebulette -0.0250215
IARS1 isoleucyl-tRNA synthetase 1 -0.0248909
FNDC3B fibronectin type III domain containing 3B -0.024715
TJP1 tight junction protein 1 -0.0245344
POTEF POTE ankyrin domain family, member F -0.0239203
HJURP Holliday junction recognition protein -0.0235818
ATXN2 ataxin 2 -0.0232895
ANKRD17 ankyrin repeat domain 17 -0.023117
ZNF609 zinc finger protein 609 -0.0228511
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0219858
AFG2A AFG2 AAA ATPase homolog A -0.0218057
HIBCH 3-hydroxyisobutyryl-CoA hydrolase -0.0215915
SCLT1 sodium channel and clathrin linker 1 -0.0210171
GPATCH8 G patch domain containing 8 -0.0209906
GPHN gephyrin -0.0208693
MLIP muscular LMNA-interacting protein -0.0206926
WSB1 WD repeat and SOCS box containing 1 -0.0206887
HSPB1 heat shock 27kDa protein 1 -0.0205622
MBNL1 muscleblind-like splicing regulator 1 -0.0203417
KPNB1 karyopherin (importin) beta 1 -0.0201185
TSC22D1 TSC22 domain family, member 1 -0.0200513
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0199511
CLIP1 CAP-GLY domain containing linker protein 1 -0.0198901
PDE10A phosphodiesterase 10A -0.0198551
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0196641
ALDH1A2 aldehyde dehydrogenase 1 family, member A2 -0.0192355
ONECUT2 one cut homeobox 2 -0.0191209
INTS6 integrator complex subunit 6 -0.0190303
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0189606
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 -0.01883
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0186617
DEK DEK proto-oncogene -0.0185957
TPX2 TPX2, microtubule-associated -0.0185289
MSI2 musashi RNA-binding protein 2 -0.0184357
PTPRG protein tyrosine phosphatase, receptor type, G -0.0183386
SDK1 sidekick cell adhesion molecule 1 -0.0181113
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0180041
BCL2 B-cell CLL/lymphoma 2 -0.017991
UNC13A unc-13 homolog A (C. elegans) -0.01799
LOC102724023 ES1 protein homolog, mitochondrial -0.0179161
GLS2 glutaminase 2 (liver, mitochondrial) -0.0178232
PBX3 pre-B-cell leukemia homeobox 3 -0.0177914
SMC3 structural maintenance of chromosomes 3 -0.0175448
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0175037