Betamethasone dipropionate_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Betamethasone dipropionate perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Betamethasone dipropionate_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FMN1 formin 1 0.173525
AKAP12 A kinase (PRKA) anchor protein 12 0.173136
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0953133
TXNRD1 thioredoxin reductase 1 0.0713698
VIM vimentin 0.0660107
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0548905
GOLGA4 golgin A4 0.0491827
KAZN kazrin, periplakin interacting protein 0.0484565
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0477437
FNDC3B fibronectin type III domain containing 3B 0.0463115
PABPC1 poly(A) binding protein, cytoplasmic 1 0.044933
ANKRD28 ankyrin repeat domain 28 0.0448733
SQSTM1 sequestosome 1 0.0444347
FN1 fibronectin 1 0.0425858
RTN4 reticulon 4 0.0409707
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 0.0357309
MAP2K1 mitogen-activated protein kinase kinase 1 0.0345674
KPNB1 karyopherin (importin) beta 1 0.0339019
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0335995
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0331942
CALD1 caldesmon 1 0.0331598
ZMYND8 zinc finger, MYND-type containing 8 0.0330898
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0330466
CANX calnexin 0.0323398
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0318343
MSN moesin 0.0312766
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.029931
RAB7A RAB7A, member RAS oncogene family 0.029115
CXCL8 chemokine (C-X-C motif) ligand 8 0.0290405
ABLIM3 actin binding LIM protein family, member 3 0.0274948
PLAT plasminogen activator, tissue 0.0274548
AKAP13 A kinase (PRKA) anchor protein 13 0.0265913
ICAM1 intercellular adhesion molecule 1 0.0265691
ELL2 elongation factor, RNA polymerase II, 2 0.0260625
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0251156
PKM pyruvate kinase, muscle 0.0249386
CSDE1 cold shock domain containing E1, RNA-binding 0.0244853
GARS1 glycyl-tRNA synthetase 1 0.0244279
FOXO3 forkhead box O3 0.0238641
OXSR1 oxidative stress responsive 1 0.0235921
MYH9 myosin, heavy chain 9, non-muscle 0.0230582
ANXA5 annexin A5 0.0230049
LDHA lactate dehydrogenase A 0.0228531
TNPO1 transportin 1 0.0227807
THOC2 THO complex 2 0.0221994
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.0217238
EIF1 eukaryotic translation initiation factor 1 0.0213883
SFTPA2 surfactant protein A2 0.0213574
PCLO piccolo presynaptic cytomatrix protein 0.0212872
FAM13B family with sequence similarity 13, member B 0.0212708
SET SET nuclear proto-oncogene 0.0211393
CDK6 cyclin-dependent kinase 6 0.0211003
CAMTA1 calmodulin binding transcription activator 1 0.0209153
ARHGAP26 Rho GTPase activating protein 26 0.0208956
EPS8 epidermal growth factor receptor pathway substrate 8 0.020766
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0205839
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0204846
NAMPT nicotinamide phosphoribosyltransferase 0.0203716
FSTL5 follistatin-like 5 0.0201076
LOC112694756 uncharaterized LOC112694756 0.0198233
ABI1 abl-interactor 1 0.0197643
ANXA2 annexin A2 0.0197304
ATP13A3 ATPase type 13A3 0.0194913
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.019467
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0192492
SOD2 superoxide dismutase 2, mitochondrial 0.0190999
BRWD3 bromodomain and WD repeat domain containing 3 0.0189086
ZFAND3 zinc finger, AN1-type domain 3 0.0188016
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0188
IL6ST interleukin 6 signal transducer 0.0186629
NPC1 Niemann-Pick disease, type C1 0.0186564
POTEF POTE ankyrin domain family, member F 0.0184506
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0184025
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0183807
IQGAP1 IQ motif containing GTPase activating protein 1 0.0182527
PMEL premelanosome protein 0.018239
GOLGB1 golgin B1 0.0181746
ERBIN erbb2 interacting protein 0.0181725
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.0181554
GRAMD1B GRAM domain containing 1B 0.0180796
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0179734
ARMC8 armadillo repeat containing 8 0.0179719
NAV2 neuron navigator 2 0.0178872
ZBTB38 zinc finger and BTB domain containing 38 0.0178561
MAX MYC associated factor X 0.0177643
PTBP2 polypyrimidine tract binding protein 2 0.0177333
GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 0.0177003
RNF145 ring finger protein 145 0.0176747
PGK1 phosphoglycerate kinase 1 0.0176702
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 0.0176444
SSB Sjogren syndrome antigen B (autoantigen La) 0.0173231
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0170162
ACTG1 actin gamma 1 0.0170151
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0169225
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2 0.016917
PUM2 pumilio RNA-binding family member 2 0.0168926
MIB1 mindbomb E3 ubiquitin protein ligase 1 0.01689
ITCH itchy E3 ubiquitin protein ligase 0.0167929
ATRN attractin 0.0166953
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) 0.0166422

decreased expression

Symbol Name Standardized Value
NLGN1 neuroligin 1 -0.206324
MT2A metallothionein 2A -0.186943
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.102254
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0708415
LSAMP limbic system-associated membrane protein -0.0683333
NRG3 neuregulin 3 -0.0682174
RAD51B RAD51 paralog B -0.0496417
TMSB10 thymosin beta 10 -0.0456594
PTK2 protein tyrosine kinase 2 -0.0428374
SLC39A11 solute carrier family 39, member 11 -0.0400775
CFAP20DC CFAP20 domain containing -0.0385661
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0376825
FMNL2 formin-like 2 -0.0371106
CADM1 cell adhesion molecule 1 -0.0362176
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 -0.0344678
LRMDA leucine rich melanocyte differentiation associated -0.0343241
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0336824
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -0.0336567
AUTS2 autism susceptibility candidate 2 -0.0335847
IGF1R insulin-like growth factor 1 receptor -0.0321527
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0313089
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) -0.0282137
SOX5 SRY (sex determining region Y)-box 5 -0.0281916
IL1RAP interleukin 1 receptor accessory protein -0.0277207
MAML3 mastermind-like 3 (Drosophila) -0.0276168
FHIT fragile histidine triad -0.0267025
CENPF centromere protein F, 350/400kDa -0.0266646
ZBTB20 zinc finger and BTB domain containing 20 -0.0266031
B2M beta-2-microglobulin -0.0264805
TNIK TRAF2 and NCK interacting kinase -0.0264664
FOXP1 forkhead box P1 -0.0263303
TBC1D22A TBC1 domain family, member 22A -0.0244295
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0244169
FRMD4A FERM domain containing 4A -0.0242116
SEPTIN9 septin 9 -0.0238661
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.02378
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0236888
DIAPH2 diaphanous-related formin 2 -0.0235447
ATXN1 ataxin 1 -0.0232446
CELF2 CUGBP, Elav-like family member 2 -0.0230238
MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 -0.0227504
CNIH3 cornichon family AMPA receptor auxiliary protein 3 -0.0226262
INTS6 integrator complex subunit 6 -0.0223509
FTL ferritin, light polypeptide -0.0219051
RNF213 ring finger protein 213 -0.0218585
IGFBP3 insulin-like growth factor binding protein 3 -0.0218316
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -0.0218259
ASPH aspartate beta-hydroxylase -0.0215859
ZMIZ1 zinc finger, MIZ-type containing 1 -0.0213854
CUX1 cut-like homeobox 1 -0.021046
ENO2 enolase 2 (gamma, neuronal) -0.0202815
ZNF638 zinc finger protein 638 -0.020263
KDM4C lysine (K)-specific demethylase 4C -0.0201937
STMN1 stathmin 1 -0.0199375
MBNL1 muscleblind-like splicing regulator 1 -0.0198203
CNKSR3 CNKSR family member 3 -0.0193615
RRBP1 ribosome binding protein 1 -0.0193054
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0192136
ACTN4 actinin, alpha 4 -0.0191701
SMYD3 SET and MYND domain containing 3 -0.0191359
ARID1B AT rich interactive domain 1B (SWI1-like) -0.0190014
BZW2 basic leucine zipper and W2 domains 2 -0.018922
NAP1L1 nucleosome assembly protein 1-like 1 -0.0187299
BBX bobby sox homolog (Drosophila) -0.0186678
SDK1 sidekick cell adhesion molecule 1 -0.018581
MYO10 myosin X -0.01858
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.0185734
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0183627
PHF21A PHD finger protein 21A -0.0183527
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0182751
NRXN3 neurexin 3 -0.0182593
SRPK2 SRSF protein kinase 2 -0.0182486
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0180347
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) -0.0180107
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.0178441
ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 -0.0176385
ARB2A ARB2 cotranscriptional regulator A -0.0176363
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0174402
CDK13 cyclin-dependent kinase 13 -0.0173451
ENTHD1 ENTH domain containing 1 -0.0173155
PTMA prothymosin, alpha -0.0171013
CABIN1 calcineurin binding protein 1 -0.0169233
EFCAB13 EF-hand calcium binding domain 13 -0.016844
CDH13 cadherin 13 -0.0166746
PTPRM protein tyrosine phosphatase, receptor type, M -0.0165202
ARFGEF3 ARFGEF family member 3 -0.0163372
EFNA5 ephrin-A5 -0.0162272
EHBP1 EH domain binding protein 1 -0.0160874
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0160376
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0160084
IFI44L interferon-induced protein 44-like -0.0159306
HJURP Holliday junction recognition protein -0.0159199
TPD52 tumor protein D52 -0.0158841
AFF1 AF4/FMR2 family, member 1 -0.0158811
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) -0.0158461
WDPCP WD repeat containing planar cell polarity effector -0.0157013
TNS1 tensin 1 -0.0155497
LHFPL2 lipoma HMGIC fusion partner-like 2 -0.0154793
PTPRF protein tyrosine phosphatase, receptor type, F -0.0153798
PDE8A phosphodiesterase 8A -0.0153474