Bimatoprost_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Bimatoprost perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Bimatoprost_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TMSB4X thymosin beta 4, X-linked 0.1124
PDE4D phosphodiesterase 4D, cAMP-specific 0.0860265
EZR ezrin 0.0779158
ADAM10 ADAM metallopeptidase domain 10 0.0746695
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0701651
ENO1 enolase 1, (alpha) 0.0658264
PTMA prothymosin, alpha 0.0656335
MINDY2 MINDY lysine 48 deubiquitinase 2 0.0653704
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.059738
PGK1 phosphoglycerate kinase 1 0.0500013
ZNF608 zinc finger protein 608 0.0490794
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0458708
LOC112694756 uncharaterized LOC112694756 0.0443625
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0443016
SQSTM1 sequestosome 1 0.0399655
DSCAM Down syndrome cell adhesion molecule 0.0395333
RPS12 ribosomal protein S12 0.039228
LDHA lactate dehydrogenase A 0.038012
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0371898
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0370156
ANXA1 annexin A1 0.0359889
MACF1 microtubule-actin crosslinking factor 1 0.0338278
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0333071
GOLGA4 golgin A4 0.0329903
SPAG9 sperm associated antigen 9 0.0321961
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0311665
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0307433
IQGAP1 IQ motif containing GTPase activating protein 1 0.0304711
VCL vinculin 0.0304339
CANX calnexin 0.0291739
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0290619
EIF4A2 eukaryotic translation initiation factor 4A2 0.0283074
UBC ubiquitin C 0.0275626
APP amyloid beta (A4) precursor protein 0.0275002
RNF145 ring finger protein 145 0.0265689
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0262778
RPL7 ribosomal protein L7 0.0259832
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0258647
JMJD1C jumonji domain containing 1C 0.025503
ERRFI1 ERBB receptor feedback inhibitor 1 0.0249181
DST dystonin 0.0241136
ELF2 E74-like factor 2 (ets domain transcription factor) 0.0235296
FAT1 FAT atypical cadherin 1 0.02337
TMF1 TATA element modulatory factor 1 0.0232921
MXI1 MAX interactor 1, dimerization protein 0.0232564
SERINC3 serine incorporator 3 0.0231411
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.023098
RAD50 RAD50 homolog (S. cerevisiae) 0.0230941
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0229396
CCDC68 coiled-coil domain containing 68 0.0228554
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0227391
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0225903
NDRG1 N-myc downstream regulated 1 0.0225226
AKAP9 A kinase (PRKA) anchor protein 9 0.0224862
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0224288
RPS6 ribosomal protein S6 0.0223444
OGA O-GlcNAcase 0.0221489
GOLGB1 golgin B1 0.0220104
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0218779
HSPA8 heat shock 70kDa protein 8 0.0218153
USP9X ubiquitin specific peptidase 9, X-linked 0.0212067
PLK2 polo-like kinase 2 0.0211707
PICALM phosphatidylinositol binding clathrin assembly protein 0.0210975
GCC2 GRIP and coiled-coil domain containing 2 0.0209633
VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) 0.020959
TOP2B topoisomerase (DNA) II beta 180kDa 0.0209575
ZFC3H1 zinc finger, C3H1-type containing 0.0209279
RO60 Ro60, Y RNA binding protein 0.020626
EIF4B eukaryotic translation initiation factor 4B 0.0206212
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.020521
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0203353
NAMPT nicotinamide phosphoribosyltransferase 0.0202185
CCNC cyclin C 0.0202016
B2M beta-2-microglobulin 0.0201019
SMAP1 small ArfGAP 1 0.0200166
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0199489
EEF2 eukaryotic translation elongation factor 2 0.0198193
KDM4C lysine (K)-specific demethylase 4C 0.0197856
ANKRD12 ankyrin repeat domain 12 0.0194188
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.0192932
MACROD2 MACRO domain containing 2 0.019262
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.0192424
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0192107
YTHDC1 YTH domain containing 1 0.0191254
ZNF638 zinc finger protein 638 0.0191079
PRRC2C proline-rich coiled-coil 2C 0.0190943
HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit 0.0190903
KTN1 kinectin 1 (kinesin receptor) 0.0190005
CSDE1 cold shock domain containing E1, RNA-binding 0.0189817
AMOTL2 angiomotin like 2 0.0189393
FXR1 fragile X mental retardation, autosomal homolog 1 0.0189381
CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 0.0188974
TNRC6B trinucleotide repeat containing 6B 0.0187482
SON SON DNA binding protein 0.0185399
SRRM1 serine/arginine repetitive matrix 1 0.0185201
MYH9 myosin, heavy chain 9, non-muscle 0.0184991
PARP4 poly (ADP-ribose) polymerase family, member 4 0.0183968
ZBTB10 zinc finger and BTB domain containing 10 0.0183002
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0182308
DUSP6 dual specificity phosphatase 6 0.0181253

decreased expression

Symbol Name Standardized Value
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.211819
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.154088
PDE4B phosphodiesterase 4B, cAMP-specific -0.125862
CPED1 cadherin-like and PC-esterase domain containing 1 -0.120931
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.108116
NBEA neurobeachin -0.0923569
SSBP2 single-stranded DNA binding protein 2 -0.0812609
DPYD dihydropyrimidine dehydrogenase -0.075066
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0688728
FOXP1 forkhead box P1 -0.0585324
RPL35A ribosomal protein L35a -0.0582351
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0541923
NAV2 neuron navigator 2 -0.05126
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0498223
DLG1 discs, large homolog 1 (Drosophila) -0.0484462
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 -0.046402
TPT1 tumor protein, translationally-controlled 1 -0.0457394
GLI2 GLI family zinc finger 2 -0.0455793
SMC4 structural maintenance of chromosomes 4 -0.0449405
FHIT fragile histidine triad -0.0423739
CCND1 cyclin D1 -0.0402906
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0402576
HSPB1 heat shock 27kDa protein 1 -0.0385985
TTC28 tetratricopeptide repeat domain 28 -0.0369072
PDE7B phosphodiesterase 7B -0.0360089
ALDH1A2 aldehyde dehydrogenase 1 family, member A2 -0.0347622
IGF2 insulin-like growth factor 2 -0.034686
EFNA5 ephrin-A5 -0.0332791
ANKRD11 ankyrin repeat domain 11 -0.0326511
RPL34 ribosomal protein L34 -0.0326292
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 -0.0325651
ENOX1 ecto-NOX disulfide-thiol exchanger 1 -0.0325598
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0323332
DIAPH3 diaphanous-related formin 3 -0.0315848
S100A4 S100 calcium binding protein A4 -0.0314844
NEBL nebulette -0.031449
GSE1 Gse1 coiled-coil protein -0.0308008
INTS6 integrator complex subunit 6 -0.0304786
LCORL ligand dependent nuclear receptor corepressor-like -0.0303291
DENND1A DENN/MADD domain containing 1A -0.0303096
IRX2 iroquois homeobox 2 -0.0294265
SOX6 SRY (sex determining region Y)-box 6 -0.0293043
HJURP Holliday junction recognition protein -0.0292557
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0291683
NFIA nuclear factor I/A -0.0290766
RPL32 ribosomal protein L32 -0.0286486
CENPE centromere protein E, 312kDa -0.0281502
BABAM2 BRISC and BRCA1 A complex member 2 -0.0277327
RFC3 replication factor C (activator 1) 3, 38kDa -0.0277296
ZNF609 zinc finger protein 609 -0.0276288
RPS23 ribosomal protein S23 -0.0275561
RPS8 ribosomal protein S8 -0.027299
GNAS GNAS complex locus -0.0270183
FUS FUS RNA binding protein -0.0270058
GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 -0.0264855
TAS2R14 taste receptor, type 2, member 14 -0.0262077
CAMKMT calmodulin-lysine N-methyltransferase -0.0258171
SCLT1 sodium channel and clathrin linker 1 -0.0256582
BMP10 bone morphogenetic protein 10 -0.02559
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0255728
TMEM65 transmembrane protein 65 -0.0254371
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) -0.0248573
RPL26 ribosomal protein L26 -0.0248143
SLC38A2 solute carrier family 38, member 2 -0.024706
RPS11 ribosomal protein S11 -0.0244593
TCF12 transcription factor 12 -0.0239448
CENPF centromere protein F, 350/400kDa -0.0238123
PARD3 par-3 family cell polarity regulator -0.0235725
TIAM2 T-cell lymphoma invasion and metastasis 2 -0.0233015
RPL19 ribosomal protein L19 -0.023269
MEIS2 Meis homeobox 2 -0.0232006
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0231877
ANKRD17 ankyrin repeat domain 17 -0.0229988
PRSS23 protease, serine, 23 -0.0225018
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0221928
PKM pyruvate kinase, muscle -0.0221229
EBNA1BP2 EBNA1 binding protein 2 -0.0220483
RPS21 ribosomal protein S21 -0.0219947
CRPPA CDP-L-ribitol pyrophosphorylase A -0.021984
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0218931
RYR2 ryanodine receptor 2 (cardiac) -0.021808
HIBCH 3-hydroxyisobutyryl-CoA hydrolase -0.0216232
RPS24 ribosomal protein S24 -0.0215964
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 -0.0213831
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0212919
CAMTA1 calmodulin binding transcription activator 1 -0.0212748
RAD18 RAD18 E3 ubiquitin protein ligase -0.0212638
COMMD10 COMM domain containing 10 -0.0212564
KDM4B lysine (K)-specific demethylase 4B -0.0211353
GPATCH2L G patch domain containing 2-like -0.0207591
PFN1 profilin 1 -0.0206448
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0205918
DHFR dihydrofolate reductase -0.0205128
POTEF POTE ankyrin domain family, member F -0.0205009
MELTF melanotransferrin -0.0204847
RCOR1 REST corepressor 1 -0.0204367
UNC13A unc-13 homolog A (C. elegans) -0.0204308
ATP5F1B ATP synthase F1 subunit beta -0.0203789
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0203362
CNTNAP3B contactin associated protein-like 3B -0.0203131