Binimetinib_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Binimetinib perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Binimetinib_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ERBB4 erb-b2 receptor tyrosine kinase 4 0.190212
ANXA1 annexin A1 0.17552
TENM3 teneurin transmembrane protein 3 0.144794
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.105113
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.101451
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 0.0979927
VIM vimentin 0.0855021
DST dystonin 0.0800343
ACTG1 actin gamma 1 0.0798963
HDAC9 histone deacetylase 9 0.0784549
PCBP2 poly(rC) binding protein 2 0.0776551
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0751209
USP34 ubiquitin specific peptidase 34 0.0714048
HSPB1 heat shock 27kDa protein 1 0.0710408
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0705527
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0702411
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0650148
EPHA6 EPH receptor A6 0.0645171
ZBTB20 zinc finger and BTB domain containing 20 0.0618144
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) 0.0613017
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0608792
SYT1 synaptotagmin I 0.0602449
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.0571528
NEBL nebulette 0.0570414
CDK6 cyclin-dependent kinase 6 0.056566
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0551605
GJA1 gap junction protein, alpha 1, 43kDa 0.0526126
MYL12B myosin, light chain 12B, regulatory 0.052606
DPYD dihydropyrimidine dehydrogenase 0.0513315
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0492721
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0491312
CXADR coxsackie virus and adenovirus receptor 0.0475614
PLK2 polo-like kinase 2 0.0475212
DDIT3 DNA-damage-inducible transcript 3 0.0468828
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric 0.0454186
KIF5B kinesin family member 5B 0.0445294
AXIN2 axin 2 0.0444265
MED13L mediator complex subunit 13-like 0.0427503
EIF4B eukaryotic translation initiation factor 4B 0.0424122
AHNAK AHNAK nucleoprotein 0.041712
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0413458
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0412653
MGAT4C MGAT4 family, member C 0.0412395
ARL15 ADP-ribosylation factor-like 15 0.0408438
EXOC6B exocyst complex component 6B 0.0401087
AREG amphiregulin 0.039849
TBL1X transducin (beta)-like 1X-linked 0.0396236
GPBP1 GC-rich promoter binding protein 1 0.039299
EEF2 eukaryotic translation elongation factor 2 0.0390901
EHBP1 EH domain binding protein 1 0.0390127
PDK4 pyruvate dehydrogenase kinase, isozyme 4 0.0384896
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0384356
BCAS3 breast carcinoma amplified sequence 3 0.0379975
SQSTM1 sequestosome 1 0.0370965
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0369383
CLDND1 claudin domain containing 1 0.0369232
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0368135
CLDN1 claudin 1 0.0365806
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0363285
SACS sacsin molecular chaperone 0.0359599
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0354691
DCAF6 DDB1 and CUL4 associated factor 6 0.0353312
FSTL5 follistatin-like 5 0.0345157
NAP1L1 nucleosome assembly protein 1-like 1 0.0343751
CLPTM1L CLPTM1-like 0.034288
MMP12 matrix metallopeptidase 12 0.0338498
FXR1 fragile X mental retardation, autosomal homolog 1 0.0336342
AHR aryl hydrocarbon receptor 0.033505
TBC1D32 TBC1 domain family, member 32 0.0331627
NRXN3 neurexin 3 0.0331566
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0330763
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0329064
CCSER1 coiled-coil serine-rich protein 1 0.0327392
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0325839
EIF4A1 eukaryotic translation initiation factor 4A1 0.0320748
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0316388
RNF213 ring finger protein 213 0.0312949
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.030975
SRRM2 serine/arginine repetitive matrix 2 0.0308302
KPNB1 karyopherin (importin) beta 1 0.0307169
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0305655
RBM39 RNA binding motif protein 39 0.0299473
PICALM phosphatidylinositol binding clathrin assembly protein 0.0299348
SPAG9 sperm associated antigen 9 0.0298197
CCNL1 cyclin L1 0.0297449
DSCAM Down syndrome cell adhesion molecule 0.0296762
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0296074
JMJD1C jumonji domain containing 1C 0.0295825
RPS3 ribosomal protein S3 0.0290537
LPP LIM domain containing preferred translocation partner in lipoma 0.0289577
KDM2A lysine (K)-specific demethylase 2A 0.0287071
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.028683
TBC1D5 TBC1 domain family, member 5 0.0286644
TPI1 triosephosphate isomerase 1 0.0286044
NBEAL1 neurobeachin-like 1 0.0281509
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.0280125
RAB1A RAB1A, member RAS oncogene family 0.0279522
ZNF638 zinc finger protein 638 0.0277707
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 0.0276212
SRRM1 serine/arginine repetitive matrix 1 0.0271296

decreased expression

Symbol Name Standardized Value
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.171977
PCDH7 protocadherin 7 -0.121171
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.102304
ASPH aspartate beta-hydroxylase -0.102204
HMGA2 high mobility group AT-hook 2 -0.0956265
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0760502
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0716076
BIRC3 baculoviral IAP repeat containing 3 -0.0709043
NHSL1 NHS-like 1 -0.0673006
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0668884
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0642719
RPS8 ribosomal protein S8 -0.0621218
ZNF804A zinc finger protein 804A -0.0597745
MARCHF4 membrane associated ring-CH-type finger 4 -0.056348
ADGRG6 adhesion G protein-coupled receptor G6 -0.0543835
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa -0.0526619
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0518003
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0504054
BCHE butyrylcholinesterase -0.0497721
RASAL2 RAS protein activator like 2 -0.0492737
RPS29 ribosomal protein S29 -0.04888
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.045782
TMSB10 thymosin beta 10 -0.0428293
RPLP1 ribosomal protein, large, P1 -0.0425777
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0385904
MTAP methylthioadenosine phosphorylase -0.0384915
TUBB tubulin, beta class I -0.0376191
MKI67 marker of proliferation Ki-67 -0.0375591
HMGA1 high mobility group AT-hook 1 -0.0366702
KCMF1 potassium channel modulatory factor 1 -0.035272
PRKCE protein kinase C, epsilon -0.0351569
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 -0.0338739
EGFR epidermal growth factor receptor -0.0337118
RPS23 ribosomal protein S23 -0.0333783
CUBN cubilin (intrinsic factor-cobalamin receptor) -0.033283
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0327697
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0319342
PRIM2 primase, DNA, polypeptide 2 (58kDa) -0.0317916
RPL23 ribosomal protein L23 -0.031545
RPS6 ribosomal protein S6 -0.0314181
PTMA prothymosin, alpha -0.0312852
RPL36 ribosomal protein L36 -0.0306532
ZFAND6 zinc finger, AN1-type domain 6 -0.0306352
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0296325
LMO7 LIM domain 7 -0.029288
RPL28 ribosomal protein L28 -0.0292704
CELF2 CUGBP, Elav-like family member 2 -0.029113
MACF1 microtubule-actin crosslinking factor 1 -0.0290074
H1-0 H1.0 linker histone -0.0288047
TBCA tubulin folding cofactor A -0.0285711
SMC4 structural maintenance of chromosomes 4 -0.0273212
EEF1G eukaryotic translation elongation factor 1 gamma -0.02646
STARD4 StAR-related lipid transfer (START) domain containing 4 -0.0263876
NAV3 neuron navigator 3 -0.0262856
RPS27A ribosomal protein S27a -0.026253
HMGB1 high mobility group box 1 -0.0255309
NECTIN3 nectin cell adhesion molecule 3 -0.0252759
RPS14 ribosomal protein S14 -0.0238268
CDK17 cyclin-dependent kinase 17 -0.0236401
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0232343
NSD2 nuclear receptor binding SET domain protein 2 -0.0232292
CCND1 cyclin D1 -0.0230139
TEAD4 TEA domain family member 4 -0.0227528
LARP4B La ribonucleoprotein domain family, member 4B -0.0223448
NASP nuclear autoantigenic sperm protein (histone-binding) -0.0222555
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -0.0221346
TMEM131 transmembrane protein 131 -0.0216619
RPL34 ribosomal protein L34 -0.0215789
TUBB6 tubulin, beta 6 class V -0.0214572
METTL15 methyltransferase like 15 -0.021451
CSNK1A1 casein kinase 1, alpha 1 -0.0213916
PKP4 plakophilin 4 -0.021381
MARCHF7 membrane associated ring-CH-type finger 7 -0.0213001
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase -0.0211558
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0211076
TRAF3 TNF receptor-associated factor 3 -0.0210102
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0208589
TRIO trio Rho guanine nucleotide exchange factor -0.0208027
E2F3 E2F transcription factor 3 -0.0207362
WDR45B WD repeat domain 45B -0.0207238
RUNX1 runt-related transcription factor 1 -0.0206186
RPS20 ribosomal protein S20 -0.020613
RPS25 ribosomal protein S25 -0.0206017
NABP1 nucleic acid binding protein 1 -0.0205377
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0202221
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.0202101
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0201753
TM4SF1 transmembrane 4 L six family member 1 -0.020092
GPHN gephyrin -0.0200617
RRM2 ribonucleotide reductase M2 -0.0198655
RPL38 ribosomal protein L38 -0.0197968
EZR ezrin -0.0196512
NF1 neurofibromin 1 -0.0195795
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 -0.0194515
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0193456
NUP153 nucleoporin 153kDa -0.0192155
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0191873
GMPS guanine monphosphate synthase -0.0190865
SUZ12 SUZ12 polycomb repressive complex 2 subunit -0.0190275
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha -0.0190142