Bortezomib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Bortezomib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Bortezomib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.358715
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.172583
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.136186
HSPH1 heat shock 105kDa/110kDa protein 1 0.0978734
HSPA8 heat shock 70kDa protein 8 0.0839247
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0761027
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0752938
FTL ferritin, light polypeptide 0.0662738
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0567273
DLG1 discs, large homolog 1 (Drosophila) 0.0563744
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.0511983
UBC ubiquitin C 0.0470263
CANX calnexin 0.0436213
EFNA5 ephrin-A5 0.0413562
TMSB4X thymosin beta 4, X-linked 0.0373017
APP amyloid beta (A4) precursor protein 0.0368031
CADM2 cell adhesion molecule 2 0.0342747
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0336529
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0322342
EPHA4 EPH receptor A4 0.0319246
ZDHHC14 zinc finger, DHHC-type containing 14 0.0312012
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0308138
DPYD dihydropyrimidine dehydrogenase 0.0290002
BAG3 BCL2-associated athanogene 3 0.0281628
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0277247
TRIO trio Rho guanine nucleotide exchange factor 0.0266922
PTPRF protein tyrosine phosphatase, receptor type, F 0.0263964
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 0.0255976
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0255582
CSMD3 CUB and Sushi multiple domains 3 0.0254658
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0253308
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.025037
RACK1 receptor for activated C kinase 1 0.0245379
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0244433
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0233012
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0231973
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 0.0230176
CFAP299 cilia and flagella associated protein 299 0.0229728
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0223816
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0222145
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.021192
FMNL2 formin-like 2 0.0210586
BIRC6 baculoviral IAP repeat containing 6 0.0206177
EEF2 eukaryotic translation elongation factor 2 0.0205977
HDLBP high density lipoprotein binding protein 0.0196919
ACACA acetyl-CoA carboxylase alpha 0.0195533
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.019392
HSPA1A heat shock 70kDa protein 1A 0.0193805
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 0.0192782
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0192461
MYOF myoferlin 0.0187502
CLIP1 CAP-GLY domain containing linker protein 1 0.0182805
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.0179115
PLK2 polo-like kinase 2 0.0178037
IARS1 isoleucyl-tRNA synthetase 1 0.0176854
HDAC9 histone deacetylase 9 0.0175247
EPB41 erythrocyte membrane protein band 4.1 0.0174327
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.0174308
UBE3C ubiquitin protein ligase E3C 0.0174235
ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 0.0174125
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0172604
ABHD3 abhydrolase domain containing 3 0.0172346
MAP4 microtubule-associated protein 4 0.0171364
LRPPRC leucine-rich pentatricopeptide repeat containing 0.0169967
HSPB1 heat shock 27kDa protein 1 0.0168995
TPT1 tumor protein, translationally-controlled 1 0.0167629
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 0.0165495
TMEM123 transmembrane protein 123 0.0164384
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0163484
CALR calreticulin 0.0162785
OSBPL1A oxysterol binding protein-like 1A 0.0162564
TNS3 tensin 3 0.0158593
GYS1 glycogen synthase 1 (muscle) 0.0157641
PUS7 pseudouridylate synthase 7 (putative) 0.0156817
STIP1 stress-induced phosphoprotein 1 0.0152817
EGFR epidermal growth factor receptor 0.0148767
SET SET nuclear proto-oncogene 0.0146739
SOD1 superoxide dismutase 1, soluble 0.0146174
LRRC49 leucine rich repeat containing 49 0.0144783
SPIRE1 spire-type actin nucleation factor 1 0.0144122
IFRD1 interferon-related developmental regulator 1 0.0143755
DST dystonin 0.0143555
TIMP2 TIMP metallopeptidase inhibitor 2 0.0141774
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0141656
HSPE1 heat shock 10kDa protein 1 0.0139019
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0137935
TBCA tubulin folding cofactor A 0.0137376
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0137187
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0136512
CUX1 cut-like homeobox 1 0.0136156
ECPAS Ecm29 proteasome adaptor and scaffold 0.0135361
KRT18 keratin 18, type I 0.0135177
HIBCH 3-hydroxyisobutyryl-CoA hydrolase 0.0134113
LOXL2 lysyl oxidase-like 2 0.0133947
ZCCHC7 zinc finger, CCHC domain containing 7 0.0133829
ATXN2 ataxin 2 0.0133062
FXR1 fragile X mental retardation, autosomal homolog 1 0.0132057
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 0.0132012
UBR2 ubiquitin protein ligase E3 component n-recognin 2 0.0132004
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.0131753

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.255842
MT2A metallothionein 2A -0.17564
VIM vimentin -0.0942167
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0860739
TM4SF1 transmembrane 4 L six family member 1 -0.061418
POTEF POTE ankyrin domain family, member F -0.0611731
WWTR1 WW domain containing transcription regulator 1 -0.059688
PSD3 pleckstrin and Sec7 domain containing 3 -0.0586609
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0578164
BCAR3 breast cancer anti-estrogen resistance 3 -0.0551943
EGR1 early growth response 1 -0.0527277
KMT2E lysine (K)-specific methyltransferase 2E -0.0525202
TMSB10 thymosin beta 10 -0.0516231
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0515098
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0488135
RTN4 reticulon 4 -0.047332
CAPRIN2 caprin family member 2 -0.0442313
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0422614
WARS1 tryptophanyl-tRNA synthetase 1 -0.040139
MT1E metallothionein 1E -0.0387757
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy -0.0387178
EZR ezrin -0.0368388
TMEM41B transmembrane protein 41B -0.0359076
TXNRD1 thioredoxin reductase 1 -0.0358765
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0342704
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0326512
MT1X metallothionein 1X -0.0326139
LOC112694756 uncharaterized LOC112694756 -0.032327
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0312789
BIRC3 baculoviral IAP repeat containing 3 -0.030352
ARHGAP5 Rho GTPase activating protein 5 -0.0303242
EMP1 epithelial membrane protein 1 -0.0301426
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0298732
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 -0.0298538
ERBIN erbb2 interacting protein -0.0298184
SPRY4 sprouty homolog 4 (Drosophila) -0.0296238
ACTG1 actin gamma 1 -0.0292464
HMGA1 high mobility group AT-hook 1 -0.0285327
RIGI RNA sensor RIG-I -0.0280822
YBX3 Y box binding protein 3 -0.0274677
USP12 ubiquitin specific peptidase 12 -0.026992
GPAT3 glycerol-3-phosphate acyltransferase 3 -0.0269064
FOSL1 FOS-like antigen 1 -0.0267767
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0260419
VCL vinculin -0.0259584
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.025831
ZBTB38 zinc finger and BTB domain containing 38 -0.0256529
ANGPTL4 angiopoietin-like 4 -0.0256195
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0255929
PTP4A2 protein tyrosine phosphatase type IVA, member 2 -0.025477
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.025125
SRGN serglycin -0.024876
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0247832
SMAD3 SMAD family member 3 -0.0245918
FBXO11 F-box protein 11 -0.0245036
NT5E 5'-nucleotidase, ecto (CD73) -0.0244871
SMC4 structural maintenance of chromosomes 4 -0.0243724
KPNA4 karyopherin alpha 4 (importin alpha 3) -0.024162
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0236549
S100A6 S100 calcium binding protein A6 -0.0226438
TOP1 topoisomerase (DNA) I -0.0220334
PLSCR1 phospholipid scramblase 1 -0.0217996
MKI67 marker of proliferation Ki-67 -0.0216164
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 -0.0214489
CENPF centromere protein F, 350/400kDa -0.0214481
CMIP c-Maf inducing protein -0.0213488
ZEB1 zinc finger E-box binding homeobox 1 -0.0210794
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0209297
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 -0.0207803
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 -0.0205987
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0200699
ADAM17 ADAM metallopeptidase domain 17 -0.0199203
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 -0.0197599
TRIP12 thyroid hormone receptor interactor 12 -0.0197174
HPCAL1 hippocalcin-like 1 -0.0192342
VMP1 vacuole membrane protein 1 -0.0191624
CAPN2 calpain 2, (m/II) large subunit -0.0189922
RERE arginine-glutamic acid dipeptide (RE) repeats -0.01879
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 -0.0187439
CDCP1 CUB domain containing protein 1 -0.0184858
SREK1 splicing regulatory glutamine/lysine-rich protein 1 -0.0184391
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0182559
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0181365
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0180587
RPL5 ribosomal protein L5 -0.0178726
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0178389
NCEH1 neutral cholesterol ester hydrolase 1 -0.0177751
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.017727
ERCC1 excision repair cross-complementation group 1 -0.0176663
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0176548
DSCAM Down syndrome cell adhesion molecule -0.0175476
ETNK1 ethanolamine kinase 1 -0.0173462
SLC38A2 solute carrier family 38, member 2 -0.0172199
YAP1 Yes-associated protein 1 -0.0172009
RAB27B RAB27B, member RAS oncogene family -0.0171929
RRM2 ribonucleotide reductase M2 -0.0171125
PYGB phosphorylase, glycogen; brain -0.017096
JMJD1C jumonji domain containing 1C -0.016989
HELZ2 helicase with zinc finger 2, transcriptional coactivator -0.0169669
MIS18BP1 MIS18 binding protein 1 -0.0169611