Brain Lower Grade Glioma_LGG_TCGA-DU-6408-01A-11R-1708-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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211 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DU-6408-01A-11R-1708-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABHD4 abhydrolase domain containing 4
ACOXL acyl-CoA oxidase-like
ADD2 adducin 2 (beta)
ADGRG4 adhesion G protein-coupled receptor G4
ALDH1A2 aldehyde dehydrogenase 1 family, member A2
ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase
ANKRD6 ankyrin repeat domain 6
ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
ASCL3 achaete-scute family bHLH transcription factor 3
ATN1 atrophin 1
ATXN8OS ATXN8 opposite strand (non-protein coding)
BAG6 BCL2-associated athanogene 6
BCAR4 breast cancer anti-estrogen resistance 4 (non-protein coding)
C10ORF2 chromosome 10 open reading frame 2
C1ORF106 chromosome 1 open reading frame 106
C1ORF68 chromosome 1 open reading frame 68
C3ORF22 chromosome 3 open reading frame 22
C8A complement component 8, alpha polypeptide
C8ORF33 chromosome 8 open reading frame 33
CABLES1 Cdk5 and Abl enzyme substrate 1
CASC3 cancer susceptibility candidate 3
CBS cystathionine-beta-synthase
CC2D2A coiled-coil and C2 domain containing 2A
CCBL2 cysteine conjugate-beta lyase 2
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CENPV centromere protein V
CLDN17 claudin 17
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit
CMTR1 cap methyltransferase 1
COMMD5 COMM domain containing 5
CPLX4 complexin 4
CPSF1 cleavage and polyadenylation specific factor 1, 160kDa
CPXM1 carboxypeptidase X (M14 family), member 1
CSF1 colony stimulating factor 1 (macrophage)
CTBP2 C-terminal binding protein 2
CX3CL1 chemokine (C-X3-C motif) ligand 1
CYCSP52 cytochrome c, somatic pseudogene 52
DCAF8L1 DDB1 and CUL4 associated factor 8-like 1
DCLK2 doublecortin-like kinase 2
DDR1 discoidin domain receptor tyrosine kinase 1
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B
DEFB129 defensin, beta 129
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide
DHTKD1 dehydrogenase E1 and transketolase domain containing 1
DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3
DTX4 deltex 4, E3 ubiquitin ligase
EBAG9 estrogen receptor binding site associated, antigen, 9
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1
EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2
EXT1 exostosin glycosyltransferase 1
FAM227B family with sequence similarity 227, member B
FBXW8 F-box and WD repeat domain containing 8
FGF23 fibroblast growth factor 23
FLJ13224 uncharacterized LOC79857
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
GABRR3 gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene)
GATSL2 GATS protein-like 2
GDF2 growth differentiation factor 2
GHSR growth hormone secretagogue receptor
GLUD1 glutamate dehydrogenase 1
GLUD2 glutamate dehydrogenase 2
GLYR1 glyoxylate reductase 1 homolog (Arabidopsis)
GNL1 guanine nucleotide binding protein-like 1
GPX5 glutathione peroxidase 5
GRHL3 grainyhead-like 3 (Drosophila)
GRXCR1 glutaredoxin, cysteine rich 1
GTSF1L gametocyte specific factor 1-like
HBG1 hemoglobin, gamma A
HBG2 hemoglobin, gamma G
HEATR5A HEAT repeat containing 5A
HHLA1 HERV-H LTR-associating 1
HIST1H2AB histone cluster 1, H2ab
HIST1H3I histone cluster 1, H3i
HSF1 heat shock transcription factor 1
INHBC inhibin, beta C
IVL involucrin
KCNN3 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3
KCTD20 potassium channel tetramerization domain containing 20
KIAA0196 KIAA0196
KIF1B kinesin family member 1B
KLRC3 killer cell lectin-like receptor subfamily C, member 3
KLRC4 killer cell lectin-like receptor subfamily C, member 4
KRT35 keratin 35, type I
LASP1 LIM and SH3 protein 1
LCE1C late cornified envelope 1C
LCE1E late cornified envelope 1E
LHFP lipoma HMGIC fusion partner
LOC283922 pyruvate dehydrogenase phosphatase regulatory subunit pseudogene
LOC400043 uncharacterized LOC400043
LOC650293 seven transmembrane helix receptor
LRRC10B leucine rich repeat containing 10B
LRRC14 leucine rich repeat containing 14
MAF1 MAF1 homolog (S. cerevisiae)
MAGEA8 melanoma antigen family A8
MANEAL mannosidase, endo-alpha-like
MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
MDC1 mediator of DNA-damage checkpoint 1
MDFI MyoD family inhibitor
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase
MRTO4 mRNA turnover 4 homolog (S. cerevisiae)
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
NCR3 natural cytotoxicity triggering receptor 3
NHSL1 NHS-like 1
NIPSNAP1 nipsnap homolog 1 (C. elegans)
NME1-NME2 NME1-NME2 readthrough
NME6 NME/NM23 nucleoside diphosphate kinase 6
NOL6 nucleolar protein 6 (RNA-associated)
NOTCH3 notch 3
NTN3 netrin 3
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR2M2 olfactory receptor, family 2, subfamily M, member 2
OR5K2 olfactory receptor, family 5, subfamily K, member 2
OR7D2 olfactory receptor, family 7, subfamily D, member 2
PAK1IP1 PAK1 interacting protein 1
PCBP2 poly(rC) binding protein 2
PCCA propionyl CoA carboxylase, alpha polypeptide
PCDHB18P protocadherin beta 18 pseudogene
PCDHB19P protocadherin beta 19 pseudogene
PDPR pyruvate dehydrogenase phosphatase regulatory subunit
PEA15 phosphoprotein enriched in astrocytes 15
PEG3-AS1 PEG3 antisense RNA 1
PEX10 peroxisomal biogenesis factor 10
PLEKHG7 pleckstrin homology domain containing, family G (with RhoGef domain) member 7
PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene
PMCHL2 pro-melanin-concentrating hormone-like 2, pseudogene
POLR2F polymerase (RNA) II (DNA directed) polypeptide F
PON3 paraoxonase 3
PPBPP2 pro-platelet basic protein pseudogene 2
PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1
PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PPP2R5A protein phosphatase 2, regulatory subunit B', alpha
PRAMEF10 PRAME family member 10
PRO0628 uncharacterized LOC29053
PRPF38A pre-mRNA processing factor 38A
PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1
PSKH1 protein serine kinase H1
PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31)
PTK2 protein tyrosine kinase 2
PTPRA protein tyrosine phosphatase, receptor type, A
PUF60 poly-U binding splicing factor 60KDa
PYCRL pyrroline-5-carboxylate reductase-like
RAD21 RAD21 homolog (S. pombe)
RBBP9 retinoblastoma binding protein 9
RBM17 RNA binding motif protein 17
RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae)
RHBG Rh family, B glycoprotein (gene/pseudogene)
RHPN1-AS1 RHPN1 antisense RNA 1 (head to head)
RNF139 ring finger protein 139
RP1L1 retinitis pigmentosa 1-like 1
RSPO3 R-spondin 3
SAMD13 sterile alpha motif domain containing 13
SAMD7 sterile alpha motif domain containing 7
SAXO1 stabilizer of axonemal microtubules 1
SCARNA22 small Cajal body-specific RNA 22
SCN4B sodium channel, voltage gated, type IV beta subunit
SETBP1 SET binding protein 1
SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
SLC22A1 solute carrier family 22 (organic cation transporter), member 1
SLC52A2 solute carrier family 52 (riboflavin transporter), member 2
SLX4IP SLX4 interacting protein
SMCP sperm mitochondria-associated cysteine-rich protein
SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
SNORA81 small nucleolar RNA, H/ACA box 81
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5)
SNX15 sorting nexin 15
SPINK5 serine peptidase inhibitor, Kazal type 5
SPRR4 small proline-rich protein 4
SUFU suppressor of fused homolog (Drosophila)
SULT1C4 sulfotransferase family, cytosolic, 1C, member 4
TAS2R1 taste receptor, type 2, member 1
TAS2R60 taste receptor, type 2, member 60
TECTB tectorin beta
TESK1 testis-specific kinase 1
TEX13B testis expressed 13B
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TIGD5 tigger transposable element derived 5
TMEM211 transmembrane protein 211
TMEM8A transmembrane protein 8A
TRAPPC9 trafficking protein particle complex 9
UBE2J1 ubiquitin-conjugating enzyme E2, J1
UBR5 ubiquitin protein ligase E3 component n-recognin 5
VGLL4 vestigial-like family member 4
VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae)
WDR31 WD repeat domain 31
XDH xanthine dehydrogenase
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
ZBTB22 zinc finger and BTB domain containing 22
ZC3H3 zinc finger CCCH-type containing 3
ZHX2 zinc fingers and homeoboxes 2
ZMYND11 zinc finger, MYND-type containing 11
ZNF500 zinc finger protein 500
ZNF641 zinc finger protein 641
ZNRD1-AS1 ZNRD1 antisense RNA 1

low expression

Symbol Name
APIP APAF1 interacting protein
ARL14EP ADP-ribosylation factor-like 14 effector protein
C11ORF58 chromosome 11 open reading frame 58
C14ORF28 chromosome 14 open reading frame 28
CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
FAR1 fatty acyl CoA reductase 1
FKBP3 FK506 binding protein 3, 25kDa
LIN7C lin-7 homolog C (C. elegans)
MED6 mediator complex subunit 6
PAPD4 PAP associated domain containing 4
PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6
PXMP4 peroxisomal membrane protein 4, 24kDa
STYX serine/threonine/tyrosine interacting protein
TMEM41B transmembrane protein 41B
WDR89 WD repeat domain 89