Brain Lower Grade Glioma_LGG_TCGA-S9-A7IZ-01A-11R-A34F-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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323 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A7IZ-01A-11R-A34F-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AACSP1 acetoacetyl-CoA synthetase pseudogene 1
ABHD17C abhydrolase domain containing 17C
ACOT2 acyl-CoA thioesterase 2
ACTRT3 actin-related protein T3
ACYP1 acylphosphatase 1, erythrocyte (common) type
ADGRF2 adhesion G protein-coupled receptor F2
ADK adenosine kinase
AGFG2 ArfGAP with FG repeats 2
AGK acylglycerol kinase
AIG1 androgen-induced 1
AK8 adenylate kinase 8
ALDH4A1 aldehyde dehydrogenase 4 family, member A1
ANP32A-IT1 ANP32A intronic transcript 1
AQP1 aquaporin 1 (Colton blood group)
ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like
ARID3C AT rich interactive domain 3C (BRIGHT-like)
ARL13A ADP-ribosylation factor-like 13A
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1
ASB18 ankyrin repeat and SOCS box containing 18
ASIP agouti signaling protein
ASPRV1 aspartic peptidase, retroviral-like 1
BANF2 barrier to autointegration factor 2
BNIPL BCL2/adenovirus E1B 19kD interacting protein like
BPGM 2,3-bisphosphoglycerate mutase
BSG basigin (Ok blood group)
BST1 bone marrow stromal cell antigen 1
C15ORF40 chromosome 15 open reading frame 40
C2ORF57 chromosome 2 open reading frame 57
C3ORF58 chromosome 3 open reading frame 58
C4ORF33 chromosome 4 open reading frame 33
C5ORF52 chromosome 5 open reading frame 52
C5ORF60 chromosome 5 open reading frame 60
C9ORF172 chromosome 9 open reading frame 172
CAV1 caveolin 1, caveolae protein, 22kDa
CCDC136 coiled-coil domain containing 136
CCDC24 coiled-coil domain containing 24
CCDC27 coiled-coil domain containing 27
CCR3 chemokine (C-C motif) receptor 3
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CERS3 ceramide synthase 3
CETN4P centrin EF-hand protein 4, pseudogene
CHPF chondroitin polymerizing factor
CHSY3 chondroitin sulfate synthase 3
CLCNKA chloride channel, voltage-sensitive Ka
CLEC4A C-type lectin domain family 4, member A
CLIC2 chloride intracellular channel 2
CLRN3 clarin 3
CMA1 chymase 1, mast cell
CMTR1 cap methyltransferase 1
COL16A1 collagen, type XVI, alpha 1
CPO carboxypeptidase O
CRLF2 cytokine receptor-like factor 2
CROT carnitine O-octanoyltransferase
CRTC3 CREB regulated transcription coactivator 3
CTBP1 C-terminal binding protein 1
CTH cystathionine gamma-lyase
CUL9 cullin 9
CYB5D2 cytochrome b5 domain containing 2
CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6
CYP2B7P cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene
CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1
CYR61 cysteine-rich, angiogenic inducer, 61
DACH1 dachshund family transcription factor 1
DACH2 dachshund family transcription factor 2
DCBLD1 discoidin, CUB and LCCL domain containing 1
DHRS7C dehydrogenase/reductase (SDR family) member 7C
DIRAS3 DIRAS family, GTP-binding RAS-like 3
DISC2 disrupted in schizophrenia 2 (non-protein coding)
DNTT DNA nucleotidylexotransferase
DRICH1 aspartate-rich 1
DTWD1 DTW domain containing 1
E2F8 E2F transcription factor 8
EDNRA endothelin receptor type A
EDNRB endothelin receptor type B
EGF epidermal growth factor
ELANE elastase, neutrophil expressed
ELSPBP1 epididymal sperm binding protein 1
ERO1LB ERO1-like beta (S. cerevisiae)
EXOC3L4 exocyst complex component 3-like 4
EXOC4 exocyst complex component 4
FABP2 fatty acid binding protein 2, intestinal
FAM170A family with sequence similarity 170, member A
FAM188B family with sequence similarity 188, member B
FAM200B family with sequence similarity 200, member B
FAM219B family with sequence similarity 219, member B
FAM223B family with sequence similarity 223, member B (non-protein coding)
FAM69A family with sequence similarity 69, member A
FBXL5 F-box and leucine-rich repeat protein 5
FGFBP2 fibroblast growth factor binding protein 2
FHL1 four and a half LIM domains 1
FMN2 formin 2
FMO4 flavin containing monooxygenase 4
FMO9P flavin containing monooxygenase 9 pseudogene
FRA10AC1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
GAL3ST2 galactose-3-O-sulfotransferase 2
GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase)
GHSR growth hormone secretagogue receptor
GJB4 gap junction protein, beta 4, 30.3kDa
GJB5 gap junction protein, beta 5, 31.1kDa
GMPR2 guanosine monophosphate reductase 2
GOLGA6B golgin A6 family, member B
GOLGA8CP golgin A8 family, member C, pseudogene
GPR137B G protein-coupled receptor 137B
GPX5 glutathione peroxidase 5
GRIA1 glutamate receptor, ionotropic, AMPA 1
GSTM2P1 glutathione S-transferase mu 2 (muscle) pseudogene 1
GSTM4 glutathione S-transferase mu 4
HAVCR1 hepatitis A virus cellular receptor 1
HERPUD2 HERPUD family member 2
HOXD8 homeobox D8
HPYR1 Helicobacter pylori responsive 1 (non-protein coding)
HRH4 histamine receptor H4
HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
IFNA4 interferon, alpha 4
IFNA8 interferon, alpha 8
IGFBP1 insulin-like growth factor binding protein 1
IL4 interleukin 4
INHA inhibin, alpha
IQCF6 IQ motif containing F6
ITIH4 inter-alpha-trypsin inhibitor heavy chain family, member 4
JADE1 jade family PHD finger 1
KCNA4 potassium channel, voltage gated shaker related subfamily A, member 4
KCTD6 potassium channel tetramerization domain containing 6
KDM4E lysine (K)-specific demethylase 4E
KGFLP1 fibroblast growth factor 7 pseudogene
KIR3DL3 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3
KLKB1 kallikrein B, plasma (Fletcher factor) 1
KLKP1 kallikrein pseudogene 1
KRT39 keratin 39, type I
KRT76 keratin 76, type II
KRTAP10-4 keratin associated protein 10-4
KRTAP10-5 keratin associated protein 10-5
KRTAP7-1 keratin associated protein 7-1 (gene/pseudogene)
LAIR2 leukocyte-associated immunoglobulin-like receptor 2
LCNL1 lipocalin-like 1
LEFTY1 left-right determination factor 1
LEFTY2 left-right determination factor 2
LINC00029 long intergenic non-protein coding RNA 29
LINC00189 long intergenic non-protein coding RNA 189
LINC00596 long intergenic non-protein coding RNA 596
LINC01599 long intergenic non-protein coding RNA 1599
LIPG lipase, endothelial
LOC100134368 uncharacterized LOC100134368
LOC400794 uncharacterized LOC400794
LOC729609 uncharacterized LOC729609
LRPAP1 low density lipoprotein receptor-related protein associated protein 1
LRRN4CL LRRN4 C-terminal like
MAN2B2 mannosidase, alpha, class 2B, member 2
MCCC2 methylcrotonoyl-CoA carboxylase 2 (beta)
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial
MESP2 mesoderm posterior basic helix-loop-helix transcription factor 2
MFAP4 microfibrillar-associated protein 4
MLIP muscular LMNA-interacting protein
MORN1 MORN repeat containing 1
MRGPRX2 MAS-related GPR, member X2
MROH7 maestro heat-like repeat family member 7
MS4A12 membrane-spanning 4-domains, subfamily A, member 12
MST1P2 macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2
MTMR11 myotubularin related protein 11
MYLPF myosin light chain, phosphorylatable, fast skeletal muscle
NANOG Nanog homeobox
NAT8L N-acetyltransferase 8-like (GCN5-related, putative)
NCOA1 nuclear receptor coactivator 1
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
NLRP13 NLR family, pyrin domain containing 13
NLRP6 NLR family, pyrin domain containing 6
NLRP7 NLR family, pyrin domain containing 7
NMB neuromedin B
NOP14-AS1 NOP14 antisense RNA 1
NUDCD3 NudC domain containing 3
NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
OR10Q1 olfactory receptor, family 10, subfamily Q, member 1
OR10W1 olfactory receptor, family 10, subfamily W, member 1
OR1D2 olfactory receptor, family 1, subfamily D, member 2
OR1L3 olfactory receptor, family 1, subfamily L, member 3
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene)
OR2D2 olfactory receptor, family 2, subfamily D, member 2
OR2F2 olfactory receptor, family 2, subfamily F, member 2
OR2S2 olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene)
OR4D2 olfactory receptor, family 4, subfamily D, member 2
OR52I2 olfactory receptor, family 52, subfamily I, member 2
OR52N1 olfactory receptor, family 52, subfamily N, member 1
OR52N2 olfactory receptor, family 52, subfamily N, member 2
OR5B17 olfactory receptor, family 5, subfamily B, member 17
OR5K2 olfactory receptor, family 5, subfamily K, member 2
OR9G4 olfactory receptor, family 9, subfamily G, member 4
ORAI2 ORAI calcium release-activated calcium modulator 2
OXT oxytocin/neurophysin I prepropeptide
P4HA3 prolyl 4-hydroxylase, alpha polypeptide III
PBX3 pre-B-cell leukemia homeobox 3
PCDHB4 protocadherin beta 4
PCDHGB2 protocadherin gamma subfamily B, 2
PCTP phosphatidylcholine transfer protein
PDE8A phosphodiesterase 8A
PDZK1P1 PDZ domain containing 1 pseudogene 1
PDZRN3 PDZ domain containing ring finger 3
PFKM phosphofructokinase, muscle
PHF7 PHD finger protein 7
PIGV phosphatidylinositol glycan anchor biosynthesis, class V
PLA2G12B phospholipase A2, group XIIB
PLCD4 phospholipase C, delta 4
PLGLA plasminogen-like A (pseudogene)
PMCHL2 pro-melanin-concentrating hormone-like 2, pseudogene
PNPLA8 patatin-like phospholipase domain containing 8
PNPO pyridoxamine 5'-phosphate oxidase
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2
POLR2J4 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene
POLRMT polymerase (RNA) mitochondrial (DNA directed)
PPTC7 PTC7 protein phosphatase homolog (S. cerevisiae)
PRAMEF11 PRAME family member 11
PRDM9 PR domain containing 9
PRG1 p53-responsive gene 1
PRR23A proline rich 23A
PRR23B proline rich 23B
PRRG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
PRSS37 protease, serine, 37
PRSS50 protease, serine, 50
PRUNE2 prune homolog 2 (Drosophila)
PSAP prosaposin
PSG9 pregnancy specific beta-1-glycoprotein 9
PSMB11 proteasome (prosome, macropain) subunit, beta type, 11
PTCD2 pentatricopeptide repeat domain 2
RAB40A RAB40A, member RAS oncogene family
RAB8B RAB8B, member RAS oncogene family
RBP2 retinol binding protein 2, cellular
RENBP renin binding protein
RGAG1 retrotransposon gag domain containing 1
RNF115 ring finger protein 115
RNF126 ring finger protein 126
RNF180 ring finger protein 180
RNF222 ring finger protein 222
RNF39 ring finger protein 39
RNU4ATAC RNA, U4atac small nuclear (U12-dependent splicing)
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila)
RRAGD Ras-related GTP binding D
S1PR1 sphingosine-1-phosphate receptor 1
SAMD14 sterile alpha motif domain containing 14
SAXO2 stabilizer of axonemal microtubules 2
SCAND2P SCAN domain containing 2 pseudogene
SCN4B sodium channel, voltage gated, type IV beta subunit
SDHAF3 succinate dehydrogenase complex assembly factor 3
SDPR serum deprivation response
SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
SGCZ sarcoglycan, zeta
SHC2 SHC (Src homology 2 domain containing) transforming protein 2
SIGLECL1 SIGLEC family like 1
SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12
SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4
SLC35B4 solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4
SLC36A3 solute carrier family 36, member 3
SMYD3 SET and MYND domain containing 3
SNORA29 small nucleolar RNA, H/ACA box 29
SNORA36A small nucleolar RNA, H/ACA box 36A
SNORA41 small nucleolar RNA, H/ACA box 41
SNORA72 small nucleolar RNA, H/ACA box 72
SNORD89 small nucleolar RNA, C/D box 89
SORL1 sortilin-related receptor, L(DLR class) A repeats containing
SOX30 SRY (sex determining region Y)-box 30
SPATA20 spermatogenesis associated 20
SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome)
SPHK2 sphingosine kinase 2
SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
SSPO SCO-spondin
ST20-AS1 ST20 antisense RNA 1
STK17B serine/threonine kinase 17b
SULT6B1 sulfotransferase family, cytosolic, 6B, member 1
SUN3 Sad1 and UNC84 domain containing 3
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
TANGO2 transport and golgi organization 2 homolog (Drosophila)
TBC1D29 TBC1 domain family, member 29
TDH L-threonine dehydrogenase (pseudogene)
TEX38 testis expressed 38
TFAMP1 transcription factor A, mitochondrial pseudogene 1
THAP10 THAP domain containing 10
TIPARP TCDD-inducible poly(ADP-ribose) polymerase
TK2 thymidine kinase 2, mitochondrial
TMEM129 transmembrane protein 129, E3 ubiquitin protein ligase
TMEM164 transmembrane protein 164
TMEM252 transmembrane protein 252
TMPRSS11B transmembrane protease, serine 11B
TNFRSF19 tumor necrosis factor receptor superfamily, member 19
TNIP2 TNFAIP3 interacting protein 2
TP53TG1 TP53 target 1 (non-protein coding)
TPK1 thiamin pyrophosphokinase 1
TPM1 tropomyosin 1 (alpha)
TRIM42 tripartite motif containing 42
TRIM6-TRIM34 TRIM6-TRIM34 readthrough
TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase
TSPAN10 tetraspanin 10
TSPAN12 tetraspanin 12
TSPAN3 tetraspanin 3
TTC23 tetratricopeptide repeat domain 23
TTC39A tetratricopeptide repeat domain 39A
TYW1B tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)
UCN3 urocortin 3
UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28
UNC45A unc-45 homolog A (C. elegans)
UOX urate oxidase, pseudogene
VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae)
VSX2 visual system homeobox 2
WDR11 WD repeat domain 11
WFDC11 WAP four-disulfide core domain 11
WFDC12 WAP four-disulfide core domain 12
WLS wntless Wnt ligand secretion mediator
WNT3 wingless-type MMTV integration site family, member 3
WNT9B wingless-type MMTV integration site family, member 9B
ZBTB7C zinc finger and BTB domain containing 7C
ZDHHC1 zinc finger, DHHC-type containing 1
ZNF703 zinc finger protein 703
ZNF774 zinc finger protein 774
ZNF853 zinc finger protein 853
ZSCAN1 zinc finger and SCAN domain containing 1
ZSCAN18 zinc finger and SCAN domain containing 18

low expression

Symbol Name
MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2
RC3H1 ring finger and CCCH-type domains 1
SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium)
TFIP11 tuftelin interacting protein 11
ZSCAN32 zinc finger and SCAN domain containing 32