Brain Lower Grade Glioma_LGG_TCGA-WY-A85A-01A-21R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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232 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-WY-A85A-01A-21R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABHD17C abhydrolase domain containing 17C
ABI1 abl-interactor 1
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
ACBD5 acyl-CoA binding domain containing 5
ACSBG1 acyl-CoA synthetase bubblegum family member 1
ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20
ADD3 adducin 3 (gamma)
ANAPC5 anaphase promoting complex subunit 5
ANKRD16 ankyrin repeat domain 16
ANKRD26 ankyrin repeat domain 26
ANKRD9 ankyrin repeat domain 9
ARHGAP12 Rho GTPase activating protein 12
ARHGAP36 Rho GTPase activating protein 36
ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1
C10ORF111 chromosome 10 open reading frame 111
C10ORF113 chromosome 10 open reading frame 113
C12ORF54 chromosome 12 open reading frame 54
C1ORF53 chromosome 1 open reading frame 53
C2ORF27A chromosome 2 open reading frame 27A
C3ORF20 chromosome 3 open reading frame 20
C3ORF79 chromosome 3 open reading frame 79
C9ORF57 chromosome 9 open reading frame 57
CACHD1 cache domain containing 1
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CCDC62 coiled-coil domain containing 62
CCDC7 coiled-coil domain containing 7
CDC123 cell division cycle 123
CDRT4 CMT1A duplicated region transcript 4
CEP128 centrosomal protein 128kDa
CHST1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand
CNGA2 cyclic nucleotide gated channel alpha 2
CNTN3 contactin 3 (plasmacytoma associated)
COQ5 coenzyme Q5 homolog, methyltransferase (S. cerevisiae)
COX8C cytochrome c oxidase subunit VIIIC
CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22
CYP4F29P cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene
DARS aspartyl-tRNA synthetase
DDAH1 dimethylarginine dimethylaminohydrolase 1
DHRS7C dehydrogenase/reductase (SDR family) member 7C
DHTKD1 dehydrogenase E1 and transketolase domain containing 1
DLL3 delta-like 3 (Drosophila)
DPPA3 developmental pluripotency associated 3
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3
ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3
EPB41L4A erythrocyte membrane protein band 4.1 like 4A
ERO1LB ERO1-like beta (S. cerevisiae)
EVX1 even-skipped homeobox 1
EYS eyes shut homolog (Drosophila)
FAM120C family with sequence similarity 120C
FAM171A1 family with sequence similarity 171, member A1
FAM188A family with sequence similarity 188, member A
FAM90A7P putative protein FAM90A7
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
FBXO18 F-box protein, helicase, 18
FBXO2 F-box protein 2
FBXW12 F-box and WD repeat domain containing 12
FMO2 flavin containing monooxygenase 2 (non-functional)
FMR1NB fragile X mental retardation 1 neighbor
FOXD4L5 forkhead box D4-like 5
FOXR1 forkhead box R1
FRMD4A FERM domain containing 4A
FSCN2 fascin actin-bundling protein 2, retinal
FTX FTX transcript, XIST regulator (non-protein coding)
GARNL3 GTPase activating Rap/RanGAP domain-like 3
GCM2 glial cells missing homolog 2 (Drosophila)
GDI2 GDP dissociation inhibitor 2
GGTA1P glycoprotein, alpha-galactosyltransferase 1 pseudogene
GLUD1 glutamate dehydrogenase 1
GLUD2 glutamate dehydrogenase 2
GNA14 guanine nucleotide binding protein (G protein), alpha 14
GPAM glycerol-3-phosphate acyltransferase, mitochondrial
GPR137B G protein-coupled receptor 137B
GPR153 G protein-coupled receptor 153
GPR32 G protein-coupled receptor 32
GPR89B G protein-coupled receptor 89B
GPX6 glutathione peroxidase 6
GSC2 goosecoid homeobox 2
H1FNT H1 histone family, member N, testis-specific
H2AFB1 H2A histone family, member B1
HDHD2 haloacid dehalogenase-like hydrolase domain containing 2
HIBCH 3-hydroxyisobutyryl-CoA hydrolase
HIGD1C HIG1 hypoxia inducible domain family, member 1C
HSFY2 heat shock transcription factor, Y linked 2
IDI1 isopentenyl-diphosphate delta isomerase 1
IDI2 isopentenyl-diphosphate delta isomerase 2
IDI2-AS1 IDI2 antisense RNA 1
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1
IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene
IGLON5 IgLON family member 5
IL12A interleukin 12A
INPP1 inositol polyphosphate-1-phosphatase
IQCF3 IQ motif containing F3
ISPD isoprenoid synthase domain containing
ITGB1BP2 integrin beta 1 binding protein (melusin) 2
ITSN1 intersectin 1 (SH3 domain protein)
IVL involucrin
JADE3 jade family PHD finger 3
KCNU1 potassium channel, subfamily U, member 1
KHDC3L KH domain containing 3-like, subcortical maternal complex member
KIF5B kinesin family member 5B
KIN Kin17 DNA and RNA binding protein
KLRC3 killer cell lectin-like receptor subfamily C, member 3
KLRF1 killer cell lectin-like receptor subfamily F, member 1
LAMA1 laminin, alpha 1
LCE1D late cornified envelope 1D
LCE1E late cornified envelope 1E
LHFPL1 lipoma HMGIC fusion partner-like 1
LOC100192426 uncharacterized LOC100192426
LOC202181 SUMO-interacting motifs containing 1 pseudogene
LOC392196 ubiquitin specific peptidase 17-like family member 2 pseudogene
LOC644145 exocyst complex component 1 pseudogene
LRRC3B leucine rich repeat containing 3B
LUZP2 leucine zipper protein 2
LUZP4 leucine zipper protein 4
MCCD1 mitochondrial coiled-coil domain 1
MIB1 mindbomb E3 ubiquitin protein ligase 1
MSRB2 methionine sulfoxide reductase B2
MTMR1 myotubularin related protein 1
MTPAP mitochondrial poly(A) polymerase
NANOS2 nanos homolog 2 (Drosophila)
NBPF15 neuroblastoma breakpoint family, member 15
NKAIN4 Na+/K+ transporting ATPase interacting 4
NKX1-2 NK1 homeobox 2
NMNAT3 nicotinamide nucleotide adenylyltransferase 3
NPVF neuropeptide VF precursor
NREP neuronal regeneration related protein
NSUN6 NOP2/Sun domain family, member 6
OR13C5 olfactory receptor, family 13, subfamily C, member 5
OR1A2 olfactory receptor, family 1, subfamily A, member 2
OR1K1 olfactory receptor, family 1, subfamily K, member 1
OR2A2 olfactory receptor, family 2, subfamily A, member 2
OR2M2 olfactory receptor, family 2, subfamily M, member 2
OR52B2 olfactory receptor, family 52, subfamily B, member 2
OR52I1 olfactory receptor, family 52, subfamily I, member 1
OR5C1 olfactory receptor, family 5, subfamily C, member 1
OR6V1 olfactory receptor, family 6, subfamily V, member 1
PAGE2B P antigen family, member 2B
PANK4 pantothenate kinase 4
PANX3 pannexin 3
PCDH15 protocadherin-related 15
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
PFKP phosphofructokinase, platelet
PITRM1 pitrilysin metallopeptidase 1
PLA2G12B phospholipase A2, group XIIB
POTEG POTE ankyrin domain family, member G
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PRB4 proline-rich protein BstNI subfamily 4
PRO0628 uncharacterized LOC29053
PRPF18 pre-mRNA processing factor 18
PRTFDC1 phosphoribosyl transferase domain containing 1
PSAT1 phosphoserine aminotransferase 1
PSG9 pregnancy specific beta-1-glycoprotein 9
PTOV1 prostate tumor overexpressed 1
RAB18 RAB18, member RAS oncogene family
RAB35 RAB35, member RAS oncogene family
RAB41 RAB41, member RAS oncogene family
RAD21L1 RAD21-like 1 (S. pombe)
RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4
RBM17 RNA binding motif protein 17
RBMXL3 RNA binding motif protein, X-linked-like 3
RGAG1 retrotransposon gag domain containing 1
RNF10 ring finger protein 10
RNF113B ring finger protein 113B
RNF151 ring finger protein 151
RNF207 ring finger protein 207
RNU6ATAC RNA, U6atac small nuclear (U12-dependent splicing)
RPL10L ribosomal protein L10-like
RPL23AP82 ribosomal protein L23a pseudogene 82
RPP38 ribonuclease P/MRP 38kDa subunit
RSU1 Ras suppressor protein 1
RUNX1-IT1 RUNX1 intronic transcript 1
RWDD3 RWD domain containing 3
RYR1 ryanodine receptor 1 (skeletal)
SCARNA17 small Cajal body-specific RNA 17
SCARNA21 small Cajal body-specific RNA 21
SCARNA7 small Cajal body-specific RNA 7
SCARNA9L small Cajal body-specific RNA 9-like
SEPHS1 selenophosphate synthetase 1
SGSM2 small G protein signaling modulator 2
SH2D7 SH2 domain containing 7
SHCBP1L SHC SH2-domain binding protein 1-like
SIGIRR single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
SIRT4 sirtuin 4
SLC15A2 solute carrier family 15 (oligopeptide transporter), member 2
SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
SLURP1 secreted LY6/PLAUR domain containing 1
SMCP sperm mitochondria-associated cysteine-rich protein
SNORA25 small nucleolar RNA, H/ACA box 25
SNORA32 small nucleolar RNA, H/ACA box 32
SNORA38B small nucleolar RNA, H/ACA box 38B
SNORA45B small nucleolar RNA, H/ACA box 45B
SNORA47 small nucleolar RNA, H/ACA box 47
SNORA76C small nucleolar RNA, H/ACA box 76C
SPACA4 sperm acrosome associated 4
SPPL3 signal peptide peptidase like 3
SPRR4 small proline-rich protein 4
SRSF9 serine/arginine-rich splicing factor 9
STOX1 storkhead box 1
TBC1D3F TBC1 domain family, member 3F
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TDRD12 tudor domain containing 12
THNSL1 threonine synthase-like 1 (S. cerevisiae)
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
TMEM14E transmembrane protein 14E
TMEM257 transmembrane protein 257
TMEM65 transmembrane protein 65
TMEM89 transmembrane protein 89
TMPRSS11B transmembrane protease, serine 11B
TPRX1 tetra-peptide repeat homeobox 1
TRAPPC12 trafficking protein particle complex 12
TRAPPC3L trafficking protein particle complex 3-like
TRDMT1 tRNA aspartic acid methyltransferase 1
UBE2E3 ubiquitin-conjugating enzyme E2E 3
USP17L2 ubiquitin specific peptidase 17-like family member 2
USP43 ubiquitin specific peptidase 43
VARS2 valyl-tRNA synthetase 2, mitochondrial
WAC WW domain containing adaptor with coiled-coil
ZCCHC18 zinc finger, CCHC domain containing 18
ZEB1 zinc finger E-box binding homeobox 1
ZFP91-CNTF ZFP91-CNTF readthrough (NMD candidate)
ZMYND11 zinc finger, MYND-type containing 11

low expression

Symbol Name
BRAP BRCA1 associated protein
GIT2 G protein-coupled receptor kinase interacting ArfGAP 2
MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme
RWDD2B RWD domain containing 2B
UBE3B ubiquitin protein ligase E3B
USP30 ubiquitin specific peptidase 30