Brivudine_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Brivudine perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Brivudine_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.180442
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.076602
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0673817
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0591881
ANXA1 annexin A1 0.0591732
CALR calreticulin 0.0568145
HSPA8 heat shock 70kDa protein 8 0.04771
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.041243
ZSWIM6 zinc finger, SWIM-type containing 6 0.0405561
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.040029
DST dystonin 0.0385275
UBC ubiquitin C 0.0384519
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0370731
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0365293
TPM3 tropomyosin 3 0.0344298
RRM2 ribonucleotide reductase M2 0.033843
CANX calnexin 0.0329385
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0320088
EIF4A2 eukaryotic translation initiation factor 4A2 0.0317272
RPL3 ribosomal protein L3 0.0316615
ENO1 enolase 1, (alpha) 0.030179
ASPH aspartate beta-hydroxylase 0.0294669
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.028989
LDHA lactate dehydrogenase A 0.0289834
PEG10 paternally expressed 10 0.0287372
AHNAK AHNAK nucleoprotein 0.0286632
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0282903
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.027963
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0264695
INTS6 integrator complex subunit 6 0.0263968
HDAC9 histone deacetylase 9 0.0258052
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0251898
NAP1L1 nucleosome assembly protein 1-like 1 0.0242565
DSCAM Down syndrome cell adhesion molecule 0.0239284
RPL4 ribosomal protein L4 0.0238089
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0236001
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0233807
PDIA6 protein disulfide isomerase family A, member 6 0.0232901
APLP2 amyloid beta (A4) precursor-like protein 2 0.0228377
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.022185
GOLGB1 golgin B1 0.0221378
DSPP dentin sialophosphoprotein 0.0216547
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.021651
SET SET nuclear proto-oncogene 0.0212468
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0207056
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0205451
BRD2 bromodomain containing 2 0.0202842
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0201865
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0197786
PDE4D phosphodiesterase 4D, cAMP-specific 0.0196586
USP9X ubiquitin specific peptidase 9, X-linked 0.0194842
EEF1G eukaryotic translation elongation factor 1 gamma 0.0191396
WWOX WW domain containing oxidoreductase 0.0186483
GJA1 gap junction protein, alpha 1, 43kDa 0.0185996
LPP LIM domain containing preferred translocation partner in lipoma 0.018457
TPI1 triosephosphate isomerase 1 0.018126
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0177656
FXR1 fragile X mental retardation, autosomal homolog 1 0.0176996
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0175974
YAP1 Yes-associated protein 1 0.0174845
CTTN cortactin 0.0172558
ADIPOR2 adiponectin receptor 2 0.0172118
H1-0 H1.0 linker histone 0.0171605
FNIP1 folliculin interacting protein 1 0.0168969
TENM3 teneurin transmembrane protein 3 0.0166392
KDM3A lysine (K)-specific demethylase 3A 0.0165455
SDK1 sidekick cell adhesion molecule 1 0.0164789
DENND5A DENN/MADD domain containing 5A 0.0164145
CCSER1 coiled-coil serine-rich protein 1 0.0162423
NRDC nardilysin convertase 0.0160846
RPS3 ribosomal protein S3 0.016011
RPL14 ribosomal protein L14 0.0159641
SF3B2 splicing factor 3b, subunit 2, 145kDa 0.0159242
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0158451
NRXN3 neurexin 3 0.0158045
NALF1 NALCN channel auxiliary factor 1 0.0157775
CTNND1 catenin (cadherin-associated protein), delta 1 0.01565
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0155115
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0154721
PCDH9 protocadherin 9 0.0153531
RTN3 reticulon 3 0.0153321
PDIA4 protein disulfide isomerase family A, member 4 0.0153268
USP53 ubiquitin specific peptidase 53 0.01508
MYH9 myosin, heavy chain 9, non-muscle 0.0150446
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 0.0149435
AUTS2 autism susceptibility candidate 2 0.0148452
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0147931
RAB1A RAB1A, member RAS oncogene family 0.014674
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0145879
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 0.0145719
SPAG9 sperm associated antigen 9 0.0143331
OGA O-GlcNAcase 0.0140995
PDK4 pyruvate dehydrogenase kinase, isozyme 4 0.0140605
HSPH1 heat shock 105kDa/110kDa protein 1 0.0139479
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0137552
CSDE1 cold shock domain containing E1, RNA-binding 0.0137384
AXIN2 axin 2 0.0137172
RPL37 ribosomal protein L37 0.0135977
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 0.013517
MACF1 microtubule-actin crosslinking factor 1 0.0134181

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.14396
TMSB10 thymosin beta 10 -0.115091
AREG amphiregulin -0.0627117
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0547039
RPL35A ribosomal protein L35a -0.0531237
NLGN1 neuroligin 1 -0.0498991
PFN1 profilin 1 -0.0442186
CELF2 CUGBP, Elav-like family member 2 -0.0378126
MYL12B myosin, light chain 12B, regulatory -0.0365808
NHSL1 NHS-like 1 -0.0359939
NR5A2 nuclear receptor subfamily 5, group A, member 2 -0.0348798
KPNB1 karyopherin (importin) beta 1 -0.032944
RPS21 ribosomal protein S21 -0.0325029
HMGA1 high mobility group AT-hook 1 -0.0320319
ANKRD12 ankyrin repeat domain 12 -0.0307912
RASAL2 RAS protein activator like 2 -0.0298705
DPYD dihydropyrimidine dehydrogenase -0.0285369
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0275933
EGR1 early growth response 1 -0.0274121
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0270507
ATP5F1B ATP synthase F1 subunit beta -0.0267403
PCDH7 protocadherin 7 -0.0258124
RPL11 ribosomal protein L11 -0.0247679
CNRIP1 cannabinoid receptor interacting protein 1 -0.0239017
RPL36 ribosomal protein L36 -0.0234305
FTL ferritin, light polypeptide -0.023236
RPS6 ribosomal protein S6 -0.0230694
RPS19 ribosomal protein S19 -0.0229172
CCN2 cellular communication network factor 2 -0.022036
RPLP1 ribosomal protein, large, P1 -0.0209723
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0207015
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) -0.0205493
RPS16 ribosomal protein S16 -0.0205432
EDN1 endothelin 1 -0.0205051
PCBP2 poly(rC) binding protein 2 -0.0188431
RPLP2 ribosomal protein, large, P2 -0.0183807
YBX3 Y box binding protein 3 -0.0181787
WDR43 WD repeat domain 43 -0.0181209
KIF18B kinesin family member 18B -0.0180195
RPS23 ribosomal protein S23 -0.0167225
CUBN cubilin (intrinsic factor-cobalamin receptor) -0.0165777
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0165689
VDAC1 voltage-dependent anion channel 1 -0.0165258
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0163683
CBX3 chromobox homolog 3 -0.0159187
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0158342
ZBTB20 zinc finger and BTB domain containing 20 -0.015792
EDARADD EDAR-associated death domain -0.0154156
RPL28 ribosomal protein L28 -0.015286
TMEM123 transmembrane protein 123 -0.0150041
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0146331
GCG glucagon -0.0145732
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0140177
PRR11 proline rich 11 -0.0140109
RBM25 RNA binding motif protein 25 -0.0138802
DLC1 DLC1 Rho GTPase activating protein -0.0138171
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0137465
RPS26 ribosomal protein S26 -0.0136653
BIRC6 baculoviral IAP repeat containing 6 -0.0133752
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.013073
ZNF804A zinc finger protein 804A -0.013047
RPS14 ribosomal protein S14 -0.0128437
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0127183
RPL23 ribosomal protein L23 -0.0126667
RPL34 ribosomal protein L34 -0.0126278
RPL8 ribosomal protein L8 -0.0126128
RPL32 ribosomal protein L32 -0.0125341
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0125018
RPL9 ribosomal protein L9 -0.0124997
CARD16 caspase recruitment domain family, member 16 -0.0123934
S100A9 S100 calcium binding protein A9 -0.0123508
RPL38 ribosomal protein L38 -0.0122513
SREK1 splicing regulatory glutamine/lysine-rich protein 1 -0.0120878
CENPF centromere protein F, 350/400kDa -0.0120805
RPL37A ribosomal protein L37a -0.0120805
FAM3C family with sequence similarity 3, member C -0.0119188
NAV3 neuron navigator 3 -0.0118754
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.011698
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0114659
RPL36A ribosomal protein L36a -0.01134
SPATS2 spermatogenesis associated, serine-rich 2 -0.0113363
BCAS3 breast carcinoma amplified sequence 3 -0.011234
RPLP0 ribosomal protein, large, P0 -0.0112326
RPL19 ribosomal protein L19 -0.0112267
PA2G4 proliferation-associated 2G4, 38kDa -0.0112136
HMGB1 high mobility group box 1 -0.0111025
RPS15 ribosomal protein S15 -0.011083
EIF5B eukaryotic translation initiation factor 5B -0.0109588
JMJD1C jumonji domain containing 1C -0.0109112
BTG3 BTG family, member 3 -0.0108977
S100A6 S100 calcium binding protein A6 -0.0108481
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0108479
ADGRG6 adhesion G protein-coupled receptor G6 -0.0108404
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase -0.0107443
TMEM41B transmembrane protein 41B -0.0106983
GARS1 glycyl-tRNA synthetase 1 -0.0106364
CDK17 cyclin-dependent kinase 17 -0.010591
NDUFA4 NDUFA4, mitochondrial complex associated -0.0104399
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0103982
CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) -0.0102726