Brivudine_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Brivudine perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Brivudine_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MT2A metallothionein 2A 0.286745
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.18844
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.155835
MCL1 myeloid cell leukemia 1 0.144356
AKAP12 A kinase (PRKA) anchor protein 12 0.12016
PM20D1 peptidase M20 domain containing 1 0.10042
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0996863
TM4SF1 transmembrane 4 L six family member 1 0.0830012
HSPA8 heat shock 70kDa protein 8 0.0767672
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0741842
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0727638
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0718544
EGR1 early growth response 1 0.0670862
CALR calreticulin 0.0663261
RPL4 ribosomal protein L4 0.0662867
RPL3 ribosomal protein L3 0.0639493
UBC ubiquitin C 0.0608546
SOD2 superoxide dismutase 2, mitochondrial 0.0594746
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0594744
APP amyloid beta (A4) precursor protein 0.0577431
BRD2 bromodomain containing 2 0.0572694
APLP2 amyloid beta (A4) precursor-like protein 2 0.0549872
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0518198
EEF2 eukaryotic translation elongation factor 2 0.0485031
MYH9 myosin, heavy chain 9, non-muscle 0.0481229
EIF4A2 eukaryotic translation initiation factor 4A2 0.0471923
ASPH aspartate beta-hydroxylase 0.0469019
IER3 immediate early response 3 0.0460214
RRM2 ribonucleotide reductase M2 0.0445566
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0442394
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 0.0434691
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0425965
ZSWIM6 zinc finger, SWIM-type containing 6 0.042014
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0417806
TPM3 tropomyosin 3 0.041021
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0409421
DSCAM Down syndrome cell adhesion molecule 0.0408652
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0405764
SPAG9 sperm associated antigen 9 0.0374157
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0373936
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0371222
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0365754
SFTPA2 surfactant protein A2 0.036249
RBM39 RNA binding motif protein 39 0.0362041
VMP1 vacuole membrane protein 1 0.0351297
RPL23 ribosomal protein L23 0.0350387
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0346798
FUS FUS RNA binding protein 0.0342237
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.03415
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0326027
PDIA6 protein disulfide isomerase family A, member 6 0.0324651
RAB7A RAB7A, member RAS oncogene family 0.0310326
YBX1 Y box binding protein 1 0.0307885
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0305518
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0305036
SDC4 syndecan 4 0.0301344
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0300114
RPN2 ribophorin II 0.0294396
SFPQ splicing factor proline/glutamine-rich 0.0293562
ENO1 enolase 1, (alpha) 0.0286997
EZR ezrin 0.0285328
FAM107B family with sequence similarity 107, member B 0.0279969
KHDC4 KH domain containing 4, pre-mRNA splicing factor 0.0278523
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0274437
SEC31A SEC31 homolog A (S. cerevisiae) 0.0270639
ELOVL5 ELOVL fatty acid elongase 5 0.0267254
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0266459
COPA coatomer protein complex, subunit alpha 0.0266003
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0265416
GOLGB1 golgin B1 0.0264499
CSDE1 cold shock domain containing E1, RNA-binding 0.0264074
EIF1 eukaryotic translation initiation factor 1 0.0263563
PDE10A phosphodiesterase 10A 0.0263008
BMP6 bone morphogenetic protein 6 0.0261718
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0261292
RSRC2 arginine/serine-rich coiled-coil 2 0.0261051
CCNL1 cyclin L1 0.0261002
MORF4L2 mortality factor 4 like 2 0.0258955
RPS18 ribosomal protein S18 0.0257895
EEF1G eukaryotic translation elongation factor 1 gamma 0.0252691
UBAP2L ubiquitin associated protein 2-like 0.0250383
PPP1R10 protein phosphatase 1, regulatory subunit 10 0.0249434
B2M beta-2-microglobulin 0.0248017
WWOX WW domain containing oxidoreductase 0.0247808
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0246787
RAB1A RAB1A, member RAS oncogene family 0.0245371
EIF4A1 eukaryotic translation initiation factor 4A1 0.0243725
CANX calnexin 0.0242725
TPI1 triosephosphate isomerase 1 0.024252
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0241494
RPL13A ribosomal protein L13a 0.0241149
CXCL2 chemokine (C-X-C motif) ligand 2 0.0240541
RPS3 ribosomal protein S3 0.0240414
CALU calumenin 0.0239862
RAD21 RAD21 homolog (S. pombe) 0.0238272
RPL37 ribosomal protein L37 0.0234128
HBP1 HMG-box transcription factor 1 0.0231542
DENND4A DENN/MADD domain containing 4A 0.0231437
NABP1 nucleic acid binding protein 1 0.0231154
SMOC1 SPARC related modular calcium binding 1 0.0229987

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.216818
VIM vimentin -0.21238
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.201518
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.160398
CMIP c-Maf inducing protein -0.124482
IGF2 insulin-like growth factor 2 -0.0882297
IGFBP3 insulin-like growth factor binding protein 3 -0.082914
DOCK4 dedicator of cytokinesis 4 -0.0630079
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0629744
TMSB10 thymosin beta 10 -0.0628188
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0599924
ACTG1 actin gamma 1 -0.0571669
PFN1 profilin 1 -0.0560934
TPM4 tropomyosin 4 -0.053881
BICC1 BicC family RNA binding protein 1 -0.0508034
PYGL phosphorylase, glycogen, liver -0.0503958
FLNB filamin B, beta -0.0491366
ERBIN erbb2 interacting protein -0.0484055
HMGA1 high mobility group AT-hook 1 -0.0442221
SAMD4A sterile alpha motif domain containing 4A -0.0437401
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.042312
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0419578
FMNL2 formin-like 2 -0.0401884
ZBTB20 zinc finger and BTB domain containing 20 -0.0399291
THSD4 thrombospondin, type I, domain containing 4 -0.0392609
TRIO trio Rho guanine nucleotide exchange factor -0.0388798
UBASH3B ubiquitin associated and SH3 domain containing B -0.0387939
CFDP1 craniofacial development protein 1 -0.0387931
VDAC1 voltage-dependent anion channel 1 -0.0386818
AK1 adenylate kinase 1 -0.0382096
EGFR epidermal growth factor receptor -0.0380301
ZMYND8 zinc finger, MYND-type containing 8 -0.0379174
PTPRG protein tyrosine phosphatase, receptor type, G -0.0375628
BABAM2 BRISC and BRCA1 A complex member 2 -0.0369648
RPL35A ribosomal protein L35a -0.0369014
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0367223
KTN1 kinectin 1 (kinesin receptor) -0.0363967
MAML3 mastermind-like 3 (Drosophila) -0.0359892
PRR16 proline rich 16 -0.0354332
DENND5B DENN/MADD domain containing 5B -0.0348565
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0343456
PTMA prothymosin, alpha -0.0328927
UTRN utrophin -0.0328869
S100A6 S100 calcium binding protein A6 -0.0328215
PDE8A phosphodiesterase 8A -0.0327209
IGFBP4 insulin-like growth factor binding protein 4 -0.0323559
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0320987
ZFHX3 zinc finger homeobox 3 -0.0319543
LMNA lamin A/C -0.031796
FOXP1 forkhead box P1 -0.0317903
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0317775
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0304873
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.0303381
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0302908
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0297585
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0297322
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0293362
EHBP1 EH domain binding protein 1 -0.0291541
EFNA5 ephrin-A5 -0.0290575
NDRG1 N-myc downstream regulated 1 -0.0288267
PTPN14 protein tyrosine phosphatase, non-receptor type 14 -0.0287944
RASAL2 RAS protein activator like 2 -0.0285611
NEGR1 neuronal growth regulator 1 -0.028505
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0284788
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0284695
TTC28 tetratricopeptide repeat domain 28 -0.0282141
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0277478
HMGA2 high mobility group AT-hook 2 -0.0274852
PHF20 PHD finger protein 20 -0.0267716
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0267323
CUX1 cut-like homeobox 1 -0.0265606
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0265318
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0261878
NEBL nebulette -0.0261809
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.025679
TPD52 tumor protein D52 -0.0253017
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0250768
PKM pyruvate kinase, muscle -0.0247075
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0246881
YY1 YY1 transcription factor -0.0244467
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0242834
SNX6 sorting nexin 6 -0.0241074
TBC1D5 TBC1 domain family, member 5 -0.0239797
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.02356
PRKCE protein kinase C, epsilon -0.0235574
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase -0.0231712
RNF217 ring finger protein 217 -0.0231408
NHSL1 NHS-like 1 -0.0230173
NAV3 neuron navigator 3 -0.0228888
TMEM131 transmembrane protein 131 -0.0227056
PCNX4 pecanex 4 -0.02268
NPEPPS aminopeptidase puromycin sensitive -0.0225798
ASTN2 astrotactin 2 -0.0225403
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0224475
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0224444
FRMD6 FERM domain containing 6 -0.0223126
P3H2 prolyl 3-hydroxylase 2 -0.022121
USP34 ubiquitin specific peptidase 34 -0.0221116
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0221107
NRG1 neuregulin 1 -0.0220095