Brivudine_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Brivudine perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Brivudine_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.182826
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.143973
HDAC9 histone deacetylase 9 0.101097
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0957085
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.08655
RPL3 ribosomal protein L3 0.0846828
UBC ubiquitin C 0.0723878
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0715515
PDGFC platelet derived growth factor C 0.0702715
TJP1 tight junction protein 1 0.0668739
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0661832
ANXA1 annexin A1 0.0661053
ZNF608 zinc finger protein 608 0.0660953
MACROD2 MACRO domain containing 2 0.0652448
DIAPH3 diaphanous-related formin 3 0.0646436
APLP2 amyloid beta (A4) precursor-like protein 2 0.0598626
EZR ezrin 0.0588378
CENPF centromere protein F, 350/400kDa 0.0533363
TOP2A topoisomerase (DNA) II alpha 170kDa 0.052566
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0508247
CREB5 cAMP responsive element binding protein 5 0.0504481
PDE4B phosphodiesterase 4B, cAMP-specific 0.0496859
POTEF POTE ankyrin domain family, member F 0.049665
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0489213
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0458564
ANKRD36 ankyrin repeat domain 36 0.045634
ENO1 enolase 1, (alpha) 0.0451652
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.044982
ANLN anillin, actin binding protein 0.0444734
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0444282
RPS8 ribosomal protein S8 0.0443116
EEF2 eukaryotic translation elongation factor 2 0.0436806
MYOF myoferlin 0.0435674
EEF1G eukaryotic translation elongation factor 1 gamma 0.0432493
USP47 ubiquitin specific peptidase 47 0.0429634
MKI67 marker of proliferation Ki-67 0.0420906
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.0412003
JUN jun proto-oncogene 0.0399986
SSBP2 single-stranded DNA binding protein 2 0.0396849
AHCYL2 adenosylhomocysteinase-like 2 0.0390149
SOX6 SRY (sex determining region Y)-box 6 0.0389876
ENO2 enolase 2 (gamma, neuronal) 0.0389698
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0385209
SAMD4A sterile alpha motif domain containing 4A 0.0381805
IFI16 interferon, gamma-inducible protein 16 0.037877
SMC4 structural maintenance of chromosomes 4 0.0369467
VCL vinculin 0.0368013
ASPH aspartate beta-hydroxylase 0.0366976
SLC38A2 solute carrier family 38, member 2 0.0365207
SRRM2 serine/arginine repetitive matrix 2 0.0364712
ANKRD12 ankyrin repeat domain 12 0.0362956
EML4 echinoderm microtubule associated protein like 4 0.0359156
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0354834
RAB27B RAB27B, member RAS oncogene family 0.0348369
BRD2 bromodomain containing 2 0.0341293
FNIP1 folliculin interacting protein 1 0.0336785
RPL14 ribosomal protein L14 0.0333554
SGMS2 sphingomyelin synthase 2 0.0328323
MYH9 myosin, heavy chain 9, non-muscle 0.0316383
GLS2 glutaminase 2 (liver, mitochondrial) 0.0307845
RPS12 ribosomal protein S12 0.0303304
AMOTL2 angiomotin like 2 0.0297363
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0288948
HSPA8 heat shock 70kDa protein 8 0.0281536
GOLGB1 golgin B1 0.0280124
CCDC88A coiled-coil domain containing 88A 0.0278874
NAV2 neuron navigator 2 0.027713
RPL4 ribosomal protein L4 0.0276246
RPS18 ribosomal protein S18 0.0274442
B2M beta-2-microglobulin 0.0271755
TXNIP thioredoxin interacting protein 0.026956
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0264614
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0264609
ZSWIM6 zinc finger, SWIM-type containing 6 0.0262634
MCL1 myeloid cell leukemia 1 0.026054
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0260495
SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 0.0259952
DST dystonin 0.0259439
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0259036
FGD4 FYVE, RhoGEF and PH domain containing 4 0.0259013
YAP1 Yes-associated protein 1 0.0256735
SIK3 SIK family kinase 3 0.0254793
AKAP12 A kinase (PRKA) anchor protein 12 0.0250469
ECT2 epithelial cell transforming 2 0.0248453
IQGAP1 IQ motif containing GTPase activating protein 1 0.0246706
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase 0.0244289
CALR calreticulin 0.0244049
LONRF2 LON peptidase N-terminal domain and ring finger 2 0.024388
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.024377
CD47 CD47 molecule 0.0243537
KTN1 kinectin 1 (kinesin receptor) 0.0243114
PDIA6 protein disulfide isomerase family A, member 6 0.0242884
FAT1 FAT atypical cadherin 1 0.0241782
TPX2 TPX2, microtubule-associated 0.0241639
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0241488
HSPB1 heat shock 27kDa protein 1 0.0241358
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 0.0240442
KIF11 kinesin family member 11 0.0239287
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.023627
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 0.0235892

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.165619
PTMA prothymosin, alpha -0.146261
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.118625
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.092819
TXNRD1 thioredoxin reductase 1 -0.0923257
S100A6 S100 calcium binding protein A6 -0.0897787
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.0884751
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0831757
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0742664
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.071553
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0705669
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0692147
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b -0.0645668
RPL35A ribosomal protein L35a -0.0645463
NBEA neurobeachin -0.0638155
TPT1 tumor protein, translationally-controlled 1 -0.0628665
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0587223
FLNB filamin B, beta -0.0567626
GARS1 glycyl-tRNA synthetase 1 -0.0536458
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0520107
ACTG1 actin gamma 1 -0.0517886
S100A4 S100 calcium binding protein A4 -0.0516275
LOC112694756 uncharaterized LOC112694756 -0.0462014
TMSB4X thymosin beta 4, X-linked -0.044182
RPLP0 ribosomal protein, large, P0 -0.0431373
DLG1 discs, large homolog 1 (Drosophila) -0.0423333
TMEM41B transmembrane protein 41B -0.0422532
SMNDC1 survival motor neuron domain containing 1 -0.0408474
ANK2 ankyrin 2, neuronal -0.0407921
RPL11 ribosomal protein L11 -0.0391243
CCND1 cyclin D1 -0.0386106
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 -0.0383045
RBM39 RNA binding motif protein 39 -0.0376642
PARD3 par-3 family cell polarity regulator -0.0375025
PYGB phosphorylase, glycogen; brain -0.0373452
ALDH3A2 aldehyde dehydrogenase 3 family, member A2 -0.0368241
RHBDD1 rhomboid domain containing 1 -0.0364957
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0361904
CAMKMT calmodulin-lysine N-methyltransferase -0.0361766
ZFAND3 zinc finger, AN1-type domain 3 -0.035854
KPNB1 karyopherin (importin) beta 1 -0.0349647
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0348461
ADAM10 ADAM metallopeptidase domain 10 -0.0346608
FOXP1 forkhead box P1 -0.0342292
ENOX1 ecto-NOX disulfide-thiol exchanger 1 -0.0339243
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0330493
NT5C2 5'-nucleotidase, cytosolic II -0.0316982
CYB5B cytochrome b5 type B (outer mitochondrial membrane) -0.0314696
NF1 neurofibromin 1 -0.0309889
NFIA nuclear factor I/A -0.0308936
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0306589
GNAS GNAS complex locus -0.0306304
HDLBP high density lipoprotein binding protein -0.0304745
ADNP activity-dependent neuroprotector homeobox -0.0301618
PTPRG protein tyrosine phosphatase, receptor type, G -0.0298534
TAS2R14 taste receptor, type 2, member 14 -0.0295228
AHI1 Abelson helper integration site 1 -0.0295019
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0294298
WSB1 WD repeat and SOCS box containing 1 -0.0283244
RIGI RNA sensor RIG-I -0.0283021
OSMR oncostatin M receptor -0.0270442
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.0269245
FKBP10 FK506 binding protein 10, 65 kDa -0.0268895
AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 -0.0268847
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 -0.0267377
VDAC1 voltage-dependent anion channel 1 -0.0263852
LARP1 La ribonucleoprotein domain family, member 1 -0.0256195
KLF3 Kruppel-like factor 3 (basic) -0.0254495
RPS21 ribosomal protein S21 -0.0253965
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0251843
NEBL nebulette -0.0250881
EHBP1 EH domain binding protein 1 -0.0249607
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.0249399
FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1 -0.0247984
USP3 ubiquitin specific peptidase 3 -0.0247575
BRWD1 bromodomain and WD repeat domain containing 1 -0.0247128
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0245914
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.02457
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa -0.0244694
PLXNA2 plexin A2 -0.024466
ZRANB2 zinc finger, RAN-binding domain containing 2 -0.0243381
GCLM glutamate-cysteine ligase, modifier subunit -0.0241854
ZNF207 zinc finger protein 207 -0.0240574
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0240217
RNF145 ring finger protein 145 -0.0238887
WDR43 WD repeat domain 43 -0.0238715
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0238369
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0237401
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0235935
PFN1 profilin 1 -0.0234659
ACACA acetyl-CoA carboxylase alpha -0.0234125
SPIDR scaffolding protein involved in DNA repair -0.0232646
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0231348
RPS16 ribosomal protein S16 -0.0230791
SEC63 SEC63 homolog (S. cerevisiae) -0.0229716
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0229134
ANKRD11 ankyrin repeat domain 11 -0.0228337
PRDX2 peroxiredoxin 2 -0.0227673
HMGB1 high mobility group box 1 -0.0227436
RBM8A RNA binding motif protein 8A -0.0223625