C3A Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

589 genes with high or low copy number in C3A relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LOC284661 uncharacterized LOC284661 3.27505
MSI2 musashi RNA-binding protein 2 3.00962
KIF27 kinesin family member 27 2.90336
CASC10 cancer susceptibility candidate 10 2.87883
MIR1915 microRNA 1915 2.87883
SKIDA1 SKI/DACH domain containing 1 2.87677
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) 2.82723
RNF103-CHMP3 RNF103-CHMP3 readthrough 2.82666
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 2.71552
RUNX3 runt-related transcription factor 3 2.69228
MIR378F microRNA 378f 2.69097
HNRNPR heterogeneous nuclear ribonucleoprotein R 2.69081
HTR1D 5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled 2.6906
RPL11 ribosomal protein L11 2.69056
TCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) 2.69052
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 2.69043
TCEB3-AS1 TCEB3 antisense RNA 1 2.69043
HMGCL 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2.69031
LYPLA2 lysophospholipase II 2.69031
E2F2 E2F transcription factor 2 2.69031
GALE UDP-galactose-4-epimerase 2.69031
PITHD1 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 2.69031
FUCA1 fucosidase, alpha-L- 1, tissue 2.69026
CNR2 cannabinoid receptor 2 (macrophage) 2.69026
MDS2 myelodysplastic syndrome 2 translocation associated 2.68978
ZNF436-AS1 ZNF436 antisense RNA 1 2.68975
ZNF436 zinc finger protein 436 2.68975
CLIC4 chloride intracellular channel 4 2.68974
TCEA3 transcription elongation factor A (SII), 3 2.68908
ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 2.68903
RCAN3AS RCAN3 antisense 2.68459
NIPAL3 NIPA-like domain containing 3 2.68459
RCAN3 RCAN family member 3 2.68445
IL22RA1 interleukin 22 receptor, alpha 1 2.68432
STPG1 sperm-tail PG-rich repeat containing 1 2.68425
IFNLR1 interferon, lambda receptor 1 2.68419
LOC284632 uncharacterized LOC284632 2.68385
GRHL3 grainyhead-like 3 (Drosophila) 2.68385
ACSM2B acyl-CoA synthetase medium-chain family member 2B 2.67979
SRSF10 serine/arginine-rich splicing factor 10 2.66864
MYOM3 myomesin 3 2.66851
PNRC2 proline-rich nuclear receptor coactivator 2 2.66848
MLYCD malonyl-CoA decarboxylase 2.63633
BTBD16 BTB (POZ) domain containing 16 2.63054
NBPF3 neuroblastoma breakpoint family, member 3 2.62532
LATS1 large tumor suppressor kinase 1 2.60071
LINC01346 long intergenic non-protein coding RNA 1346 2.59831
MIR4675 microRNA 4675 2.58759
PLXDC2 plexin domain containing 2 2.53605
HMGN2 high mobility group nucleosomal binding domain 2 2.53544
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 2.53521
MIR1976 microRNA 1976 2.53521
MIR3680-2 microRNA 3680-2 2.48781
MIR3680-1 microRNA 3680-1 2.48781
SRRM1 serine/arginine repetitive matrix 1 2.43546
C1QB complement component 1, q subcomponent, B chain 2.42626
MIR4684 microRNA 4684 2.42626
C1QC complement component 1, q subcomponent, C chain 2.42626
C1QA complement component 1, q subcomponent, A chain 2.42626
EPHA8 EPH receptor A8 2.42626
MIR3115 microRNA 3115 2.42623
MIR4253 microRNA 4253 2.42623
C1ORF234 chromosome 1 open reading frame 234 2.42623
EPHB2 EPH receptor B2 2.42621
KDM1A lysine (K)-specific demethylase 1A 2.42621
LUZP1 leucine zipper protein 1 2.42614
ALPL alkaline phosphatase, liver/bone/kidney 2.42554
RAP1GAP RAP1 GTPase activating protein 2.42318
USP48 ubiquitin specific peptidase 48 2.42295
LDLRAD2 low density lipoprotein receptor class A domain containing 2 2.41879
HSPG2 heparan sulfate proteoglycan 2 2.41714
LOC100506801 uncharacterized LOC100506801 2.3744
NEBL-AS1 NEBL antisense RNA 1 2.36016
PDIK1L PDLIM1 interacting kinase 1 like 2.34294
TUBA3D tubulin, alpha 3d 2.34171
MTFR1L mitochondrial fission regulator 1-like 2.34149
LOC646471 uncharacterized LOC646471 2.34149
SEPN1 selenoprotein N, 1 2.34149
AUNIP aurora kinase A and ninein interacting protein 2.34135
PAQR7 progestin and adipoQ receptor family member VII 2.34135
MIR3917 microRNA 3917 2.34135
SLC30A2 solute carrier family 30 (zinc transporter), member 2 2.34101
TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase 2.34101
STMN1 stathmin 1 2.34094
LDLRAP1 low density lipoprotein receptor adaptor protein 1 2.34094
EXTL1 exostosin-like glycosyltransferase 1 2.34047
PAFAH2 platelet-activating factor acetylhydrolase 2, 40kDa 2.3404
MAN1C1 mannosidase, alpha, class 1C, member 1 2.33999
TMEM57 transmembrane protein 57 2.31858
RHCE Rh blood group, CcEe antigens 2.31486
SYF2 SYF2 pre-mRNA-splicing factor 2.30366
MIR548AC microRNA 548ac 2.24091
NCMAP noncompact myelin associated protein 2.23138
C10ORF113 chromosome 10 open reading frame 113 2.22595
ECE1 endothelin converting enzyme 1 2.22203
FAM43B family with sequence similarity 43, member B 2.21673
HP1BP3 heterochromatin protein 1, binding protein 3 2.21651
MUL1 mitochondrial E3 ubiquitin protein ligase 1 2.21644
CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 2.21644
SH2D5 SH2 domain containing 5 2.21634
LINC01141 long intergenic non-protein coding RNA 1141 2.21631
KIF17 kinesin family member 17 2.2163
PINK1 PTEN induced putative kinase 1 2.21587
DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) 2.21573
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 2.21526
NEBL nebulette 2.21053
DHDDS dehydrodolichyl diphosphate synthase 2.20156
LIN28A lin-28 homolog A (C. elegans) 2.20147
FAM110D family with sequence similarity 110, member D 2.19869
ZNF593 zinc finger protein 593 2.19848
CNKSR1 connector enhancer of kinase suppressor of Ras 1 2.19805
CATSPER4 cation channel, sperm associated 4 2.19805
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 2.19801
CEP85 centrosomal protein 85kDa 2.19791
WNT4 wingless-type MMTV integration site family, member 4 2.19755
RSRP1 arginine/serine-rich protein 1 2.16781
AJAP1 adherens junctions associated protein 1 2.14857
ZBTB40 zinc finger and BTB domain containing 40 2.13426
PADI4 peptidyl arginine deiminase, type IV 2.1286
PADI6 peptidyl arginine deiminase, type VI 2.12859
RCC2 regulator of chromosome condensation 2 2.12858
PRKG1 protein kinase, cGMP-dependent, type I 2.12588
VWA5B1 von Willebrand factor A domain containing 5B1 2.12278
CD52 CD52 molecule 2.0931
UBXN11 UBX domain protein 11 2.09294
AIM1L absent in melanoma 1-like 2.09293
ZNF683 zinc finger protein 683 2.09293
GGT8P gamma-glutamyltransferase 8 pseudogene 2.09
SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 2.08984
PADI2 peptidyl arginine deiminase, type II 2.08975
PADI1 peptidyl arginine deiminase, type I 2.0897
UTS2 urotensin 2 2.05717
VAMP3 vesicle-associated membrane protein 3 2.05717
PER3 period circadian clock 3 2.05686
MIR4417 microRNA 4417 2.05607
TMEM50A transmembrane protein 50A 2.05184
MIR4632 microRNA 4632 2.04501
PLA2G2F phospholipase A2, group IIF 2.03564
PLA2G5 phospholipase A2, group V 2.03554
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 2.03539
PLA2G2D phospholipase A2, group IID 2.03536
OTUD3 OTU deubiquitinase 3 2.03497
PLA2G2E phospholipase A2, group IIE 2.03497
TNFRSF9 tumor necrosis factor receptor superfamily, member 9 2.03377
ACTL8 actin-like 8 2.03315
IGSF21 immunoglobin superfamily, member 21 2.03315
KLHDC7A kelch domain containing 7A 2.0331
AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) 2.03289
PARK7 parkinson protein 7 2.03276
PQLC2 PQ loop repeat containing 2 2.0327
ERRFI1 ERBB receptor feedback inhibitor 1 2.03224
PLA2G2C phospholipase A2, group IIC 2.03177
UBXN10 UBX domain protein 10 2.03177
EMC1 ER membrane protein complex subunit 1 2.03168
MRTO4 mRNA turnover 4 homolog (S. cerevisiae) 2.03166
AKR7A3 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) 2.03166
LOC100506730 uncharacterized LOC100506730 2.03166
TAS1R2 taste receptor, type 1, member 2 2.03121
ALDH4A1 aldehyde dehydrogenase 4 family, member A1 2.03121
MIR4695 microRNA 4695 2.03121
PAX7 paired box 7 2.03106
MIR4689 microRNA 4689 2.03074
CDA cytidine deaminase 2.01056
PRDM2 PR domain containing 2, with ZNF domain 1.99688
PADI3 peptidyl arginine deiminase, type III 1.99014
CROCCP2 ciliary rootlet coiled-coil, rootletin pseudogene 2 1.98789
ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like 1.98398
TMCO4 transmembrane and coiled-coil domains 4 1.98093
RNF186 ring finger protein 186 1.98069
NBL1 neuroblastoma 1, DAN family BMP antagonist 1.98064
MINOS1-NBL1 MINOS1-NBL1 readthrough 1.98063
MINOS1 mitochondrial inner membrane organizing system 1 1.98061
HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled 1.98057
CAPZB capping protein (actin filament) muscle Z-line, beta 1.9762
DRAXIN dorsal inhibitory axon guidance protein 1.97539
FBXO2 F-box protein 2 1.97535
FBXO6 F-box protein 6 1.97535
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1.97535
PTCHD2 patched domain containing 2 1.975
FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1 1.97199
KIAA2013 KIAA2013 1.96953
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 1.9693
MIIP migration and invasion inhibitory protein 1.96914
MFN2 mitofusin 2 1.96898
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 1.96833
C1ORF158 chromosome 1 open reading frame 158 1.96786
AGTRAP angiotensin II receptor-associated protein 1.96785
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) 1.96768
AADACL4 arylacetamide deacetylase-like 4 1.96731
DHRS3 dehydrogenase/reductase (SDR family) member 3 1.96717
AADACL3 arylacetamide deacetylase-like 3 1.96694
ATP13A2 ATPase type 13A2 1.96648
PRAMEF12 PRAME family member 12 1.96643
RNU6-48P RNA, U6 small nuclear 48, pseudogene 1.96633
MFAP2 microfibrillar-associated protein 2 1.96589
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B 1.96488
LINC00339 long intergenic non-protein coding RNA 339 1.96069
UBR4 ubiquitin protein ligase E3 component n-recognin 4 1.95672
ACOT7 acyl-CoA thioesterase 7 1.95646
GPR153 G protein-coupled receptor 153 1.95635
RPL22 ribosomal protein L22 1.95635
HES3 hes family bHLH transcription factor 3 1.95635
MIR34A microRNA 34a 1.9562
AKR7L aldo-keto reductase family 7-like (gene/pseudogene) 1.95567
ICMT isoprenylcysteine carboxyl methyltransferase 1.95541
RNF207 ring finger protein 207 1.95541
CHD5 chromodomain helicase DNA binding protein 5 1.95502
NOL9 nucleolar protein 9 1.9541
PLEKHG5 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 1.95403
TAS1R1 taste receptor, type 1, member 1 1.95395
TNFRSF25 tumor necrosis factor receptor superfamily, member 25 1.95374
THAP3 THAP domain containing, apoptosis associated protein 3 1.95274
PHF13 PHD finger protein 13 1.95274
ZBTB48 zinc finger and BTB domain containing 48 1.95267
DNAJC11 DnaJ (Hsp40) homolog, subfamily C, member 11 1.95245
KLHL21 kelch-like family member 21 1.95238
DKK1 dickkopf WNT signaling pathway inhibitor 1 1.948
PRKG1-AS1 PRKG1 antisense RNA 1 1.948
RSG1 REM2 and RAB-like small GTPase 1 1.94327
ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 1.94324
SPATA21 spermatogenesis associated 21 1.94309
MIR4252 microRNA 4252 1.93452
ESPN espin 1.93452
HES2 hes family bHLH transcription factor 2 1.93452
PDPN podoplanin 1.92734
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 1.92673
APITD1 apoptosis-inducing, TAF9-like domain 1 1.92661
CORT cortistatin 1.92661
APITD1-CORT APITD1-CORT readthrough 1.92661
MTOR-AS1 MTOR antisense RNA 1 1.92378
ANGPTL7 angiopoietin-like 7 1.92378
UBIAD1 UbiA prenyltransferase domain containing 1 1.92359
PRAMEF11 PRAME family member 11 1.92023
FBXO44 F-box protein 44 1.9077
LOC400736 PRAME family member-like 1.90604
NPPB natriuretic peptide B 1.90269
NPPA-AS1 NPPA antisense RNA 1 1.90269
NPPA natriuretic peptide A 1.90269
CLCN6 chloride channel, voltage-sensitive 6 1.90264
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) 1.89694
GPR157 G protein-coupled receptor 157 1.89351
PRAMEF1 PRAME family member 1 1.89141
CDC42 cell division cycle 42 1.89136
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2 1.88958
NECAP2 NECAP endocytosis associated 2 1.88198
SZRD1 SUZ RNA binding domain containing 1 1.87962
NBPF1 neuroblastoma breakpoint family, member 1 1.87649
TMEM201 transmembrane protein 201 1.87377
FBXO42 F-box protein 42 1.87194
RBP7 retinol binding protein 7, cellular 1.8658
MASP2 mannan-binding lectin serine peptidase 2 1.86573
TARDBP TAR DNA binding protein 1.86573
C1ORF127 chromosome 1 open reading frame 127 1.86522
MTOR mechanistic target of rapamycin (serine/threonine kinase) 1.86355
SRM spermidine synthase 1.86348
EXOSC10 exosome component 10 1.86345
SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 1.86341
SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7 1.86331
CELA3A chymotrypsin-like elastase family, member 3A 1.86227
CA6 carbonic anhydrase VI 1.85674
PEX14 peroxisomal biogenesis factor 14 1.85487
CROCCP3 ciliary rootlet coiled-coil, rootletin pseudogene 3 1.85478
SLC45A1 solute carrier family 45, member 1 1.85476
EPHA2 EPH receptor A2 1.85384
NMNAT1 nicotinamide nucleotide adenylyltransferase 1 1.85216
LRRC38 leucine rich repeat containing 38 1.8521
PRAMEF16 PRAME family member 16 1.85203
HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1 1.84803
MLX MLX, MAX dimerization protein 1.84703
COASY CoA synthase 1.84703
PSMC3IP PSMC3 interacting protein 1.84703
FLJ37453 uncharacterized LOC729614 1.84206
IFFO2 intermediate filament family orphan 2 1.83483
UQCRHL ubiquinol-cytochrome c reductase hinge protein-like 1.82028
CTRC chymotrypsin C (caldecrin) 1.82024
CASP9 caspase 9, apoptosis-related cysteine peptidase 1.82023
EFHD2 EF-hand domain family, member D2 1.82022
CELA2B chymotrypsin-like elastase family, member 2B 1.82022
CELA2A chymotrypsin-like elastase family, member 2A 1.82022
SLC25A34 solute carrier family 25, member 34 1.81643
AGMAT agmatine ureohydrolase (agmatinase) 1.81641
FBLIM1 filamin binding LIM protein 1 1.81638
DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 1.81634
TMEM82 transmembrane protein 82 1.81634
PGD phosphogluconate dehydrogenase 1.81352
CASZ1 castor zinc finger 1 1.81295
UBE4B ubiquitination factor E4B 1.81139
LZIC leucine zipper and CTNNBIP1 domain containing 1.80584
PRAMEF17 PRAME family member 17 1.80331
ZBTB17 zinc finger and BTB domain containing 17 1.80291
C1ORF64 chromosome 1 open reading frame 64 1.80288
SPEN spen family transcriptional repressor 1.80286
CTNNBIP1 catenin, beta interacting protein 1 1.80278
ROMO1 reactive oxygen species modulator 1 1.80192
NAGLU N-acetylglucosaminidase, alpha 1.8008
TMEM51-AS1 TMEM51 antisense RNA 1 1.79944
PRAMEF14 PRAME family member 14 1.79771
FAM134C family with sequence similarity 134, member C 1.79769
PRAMEF15 PRAME family member 15 1.79742
PRAMEF9 PRAME family member 9 1.79742
MST1P2 macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 1.79374
FAM133DP family with sequence similarity 133, member A pseudogene 1.7936
ACTR3BP2 ACTR3B pseudogene 2 1.79271
PIK3CD-AS1 PIK3CD antisense RNA 1 1.78024
RSC1A1 regulatory solute carrier protein, family 1, member 1 1.7689
DDI2 DNA-damage inducible 1 homolog 2 (S. cerevisiae) 1.76879
TMEM51 transmembrane protein 51 1.7629
NPHP4 nephronophthisis 4 1.75648
FAM131C family with sequence similarity 131, member C 1.75613
HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) 1.75612
CLCNKB chloride channel, voltage-sensitive Kb 1.75589
CLCNKA chloride channel, voltage-sensitive Ka 1.75553
PRAMEF19 PRAME family member 19 1.75535
LOC391003 PRAME family member-like 1.75535
CLSTN1 calsyntenin 1 1.75219
NFS1 NFS1 cysteine desulfurase 1.73997
PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta 1.73753
RBM39 RNA binding motif protein 39 1.73716
H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 1.73636
ENO1-AS1 ENO1 antisense RNA 1 1.72067
ENO1 enolase 1, (alpha) 1.7205
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 1.69646
LMTK1 lemur tail kinase 1 1.68718
PHF20 PHD finger protein 20 1.68087
PRAMEF20 PRAME family member 20 1.68083
CELA3B chymotrypsin-like elastase family, member 3B 1.66889
CAMTA1 calmodulin binding transcription activator 1 1.65182
TMEM236 transmembrane protein 236 1.64044
HNRNPCL2 heterogeneous nuclear ribonucleoprotein C-like 2 1.63385
CROCC ciliary rootlet coiled-coil, rootletin 1.62257
POU6F2 POU class 6 homeobox 2 1.61609
ZNF385B zinc finger protein 385B 1.58766
KAZN kazrin, periplakin interacting protein 1.56917
SLC25A33 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 1.53131
PRAMEF10 PRAME family member 10 1.52391
PRAMEF4 PRAME family member 4 1.52391
PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 1.51909
PABPC1P2 poly(A) binding protein, cytoplasmic 1 pseudogene 2 1.49805
ZEB2-AS1 ZEB2 antisense RNA 1 1.49689
ARHGAP15 Rho GTPase activating protein 15 1.47906
LOC284788 uncharacterized LOC284788 1.47593
LINC00261 long intergenic non-protein coding RNA 261 1.47588
FOXA2 forkhead box A2 1.47588
ACVR2A activin A receptor, type IIA 1.45813
KYNU kynureninase 1.45791
ORC4 origin recognition complex, subunit 4 1.45776
TEX41 testis expressed 41 (non-protein coding) 1.44817
RYR2 ryanodine receptor 2 (cardiac) 1.44678
PTH2R parathyroid hormone 2 receptor 1.42642
RERE arginine-glutamic acid dipeptide (RE) repeats 1.42571
ZEB2 zinc finger E-box binding homeobox 2 1.41517
ALDOB aldolase B, fructose-bisphosphate 1.41018
ZNF189 zinc finger protein 189 1.41018
BAAT bile acid CoA:amino acid N-acyltransferase 1.41018
MRPL50 mitochondrial ribosomal protein L50 1.41018
LYPD6 LY6/PLAUR domain containing 6 1.40139
YY1P2 YY1 transcription factor pseudogene 2 1.39709
LYPD1 LY6/PLAUR domain containing 1 1.39404
LPPR1 lipid phosphate phosphatase-related protein type 1 1.38961
ZRANB3 zinc finger, RAN-binding domain containing 3 1.38735
ARL5A ADP-ribosylation factor-like 5A 1.38662
NXPH2 neurexophilin 2 1.3821
MMADHC methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 1.38173
SPOPL speckle-type POZ protein-like 1.3816
HNRNPCL1 heterogeneous nuclear ribonucleoprotein C-like 1 1.3814
LOC649330 1.3814
DEFB132 defensin, beta 132 1.37863
SIRPG signal-regulatory protein gamma 1.37692
MAP2 microtubule-associated protein 2 1.37601
DEFB129 defensin, beta 129 1.37438
GTDC1 glycosyltransferase-like domain containing 1 1.37413
LOC100289473 cytoskeleton associated protein 2-like pseudogene 1.37344
LOC100507600 uncharacterized LOC100507600 1.37309
MCM6 minichromosome maintenance complex component 6 1.37292
LCT lactase 1.37286
CXCR4 chemokine (C-X-C motif) receptor 4 1.37275
DARS aspartyl-tRNA synthetase 1.37275
TRIB3 tribbles pseudokinase 3 1.3717
UNC80 unc-80 homolog (C. elegans) 1.37141
SOX12 SRY (sex determining region Y)-box 12 1.37135
C20ORF202 chromosome 20 open reading frame 202 1.37043
SIRPD signal-regulatory protein delta 1.37
PIKFYVE phosphoinositide kinase, FYVE finger containing 1.36998
ZCCHC3 zinc finger, CCHC domain containing 3 1.3694
TMEM74B transmembrane protein 74B 1.36883
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 1.36833
PDYN prodynorphin 1.36792
MAP3K19 mitogen-activated protein kinase kinase kinase 19 1.3677
SIRPA signal-regulatory protein alpha 1.36768
HNMT histamine N-methyltransferase 1.36635
TCF15 transcription factor 15 (basic helix-loop-helix) 1.36485
CSNK2A1 casein kinase 2, alpha 1 polypeptide 1.36473
SLC52A3 solute carrier family 52 (riboflavin transporter), member 3 1.36407
SRXN1 sulfiredoxin 1 1.3637
CPS1-IT1 CPS1 intronic transcript 1 1.36345
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 1.36333
MYL1 myosin, light chain 1, alkali; skeletal, fast 1.36067
RPE ribulose-5-phosphate-3-epimerase 1.3606
ACADL acyl-CoA dehydrogenase, long chain 1.36054
KANSL1L KAT8 regulatory NSL complex subunit 1-like 1.36046
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 1.36014
TBC1D20 TBC1 domain family, member 20 1.3601
DEFB128 defensin, beta 128 1.35915
LINC01433 long intergenic non-protein coding RNA 1433 1.35814
PRNP prion protein 1.35752
ADRA1D adrenoceptor alpha 1D 1.35728
IDH1-AS1 IDH1 antisense RNA 1 1.35706
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 1.35706
CCDC74A coiled-coil domain containing 74A 1.3568
FKBP1A FK506 binding protein 1A, 12kDa 1.35618
SDCBP2 syndecan binding protein (syntenin) 2 1.3561
FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (NMD candidate) 1.3561
SDCBP2-AS1 SDCBP2 antisense RNA 1 1.3561
SNPH syntaphilin 1.35597
NSFL1C NSFL1 (p97) cofactor (p47) 1.35592
NRSN2 neurensin 2 1.35448
UBXN4 UBX domain protein 4 1.35441
SIRPB2 signal-regulatory protein beta 2 1.35424
SESTD1 SEC14 and spectrin domains 1 1.354
DEFB126 defensin, beta 126 1.35271
STK35 serine/threonine kinase 35 1.35263
MIR128-1 microRNA 128-1 1.35258
DEFB127 defensin, beta 127 1.35232
PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 1.3523
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 1.35187
RND3 Rho family GTPase 3 1.35093
C20ORF141 chromosome 20 open reading frame 141 1.35034
TMEM239 transmembrane protein 239 1.35034
CPXM1 carboxypeptidase X (M14 family), member 1 1.35034
PCED1A PC-esterase domain containing 1A 1.35034
SLC4A11 solute carrier family 4, sodium borate transporter, member 11 1.35011
EBF4 early B-cell factor 4 1.35004
CCNT2-AS1 CCNT2 antisense RNA 1 1.34976
ACMSD aminocarboxymuconate semialdehyde decarboxylase 1.34976
CCNT2 cyclin T2 1.34976
VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) 1.34974
RWDD1 RWD domain containing 1 1.34966
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 1.34964
STAM2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 1.34936
PTPRA protein tyrosine phosphatase, receptor type, A 1.349
HDAC2 histone deacetylase 2 1.34895
FAM110A family with sequence similarity 110, member A 1.34683
MARCKS myristoylated alanine-rich protein kinase C substrate 1.34611
LINC01268 long intergenic non-protein coding RNA 1268 1.34611
ANGPT4 angiopoietin 4 1.34596
PRNT prion protein (testis specific) 1.34592
PRND prion protein 2 (dublet) 1.34592
TGM6 transglutaminase 6 1.34575
SNORD119 small nucleolar RNA, C/D box 119 1.34575
SNRPB small nuclear ribonucleoprotein polypeptides B and B1 1.34575
CPS1 carbamoyl-phosphate synthase 1, mitochondrial 1.34543
TGM3 transglutaminase 3 1.34454
FAM26E family with sequence similarity 26, member E 1.34398
FAM26D family with sequence similarity 26, member D 1.34321
C20ORF78 chromosome 20 open reading frame 78 1.34278
SCP2D1 SCP2 sterol-binding domain containing 1 1.34273
LOC100270804 uncharacterized LOC100270804 1.34267
LINC00652 long intergenic non-protein coding RNA 652 1.34267
SMOX spermine oxidase 1.34105
MIR103B2 microRNA 103b-2 1.34054
MIR103A2 microRNA 103a-2 1.34054
KIF5C kinesin family member 5C 1.34006
C2ORF27A chromosome 2 open reading frame 27A 1.33949
EPC2 enhancer of polycomb homolog 2 (Drosophila) 1.33941
CCNYL1 cyclin Y-like 1 1.3393
PLEKHM3 pleckstrin homology domain containing, family M, member 3 1.3393
FZD5 frizzled class receptor 5 1.3393
MIR4775 microRNA 4775 1.3393
CRYGC crystallin, gamma C 1.33928
CRYGB crystallin, gamma B 1.33928
CRYGD crystallin, gamma D 1.33928
CRYGA crystallin, gamma A 1.33927
LOC100507443 uncharacterized LOC100507443 1.33926
C2ORF27B chromosome 2 open reading frame 27B 1.3392
SPEF1 sperm flagellar 1 1.33793
CDC25B cell division cycle 25B 1.33793
CENPB centromere protein B, 80kDa 1.33793
NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit 1.33787
RIN2 Ras and Rab interactor 2 1.33785
LYPD6B LY6/PLAUR domain containing 6B 1.33785
RAD21L1 RAD21-like 1 (S. pombe) 1.33782
ADAM33 ADAM metallopeptidase domain 33 1.33727
GFRA4 GDNF family receptor alpha 4 1.33727
ATRN attractin 1.33719
SIGLEC1 sialic acid binding Ig-like lectin 1, sialoadhesin 1.33696
FAM162B family with sequence similarity 162, member B 1.33631
KIF1B kinesin family member 1B 1.33609
KPNA5 karyopherin alpha 5 (importin alpha 6) 1.33597
ZUFSP zinc finger with UFM1-specific peptidase domain 1.33597
ZNF343 zinc finger protein 343 1.33574
SNORD110 small nucleolar RNA, C/D box 110 1.33566
NOP56 NOP56 ribonucleoprotein 1.33566
SNORA51 small nucleolar RNA, H/ACA box 51 1.33566
SNORD56 small nucleolar RNA, C/D box 56 1.33566
SNORD86 small nucleolar RNA, C/D box 86 1.33566
SNORD57 small nucleolar RNA, C/D box 57 1.33566
MIR1292 microRNA 1292 1.33566
IDH3B isocitrate dehydrogenase 3 (NAD+) beta 1.33559
RSPH4A radial spoke head 4 homolog A (Chlamydomonas) 1.33482
MIR3679 microRNA 3679 1.33401
HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 1.33398
LZTS3 leucine zipper, putative tumor suppressor family member 3 1.33352
LINC00851 long intergenic non-protein coding RNA 851 1.33346
DZANK1 double zinc ribbon and ankyrin repeat domains 1 1.33346
MIR3192 microRNA 3192 1.33346
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 1.33309
FASTKD5 FAST kinase domains 5 1.33308
RBBP9 retinoblastoma binding protein 9 1.33307
POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa 1.33307
UBOX5-AS1 UBOX5 antisense RNA 1 1.33296
UBOX5 U-box domain containing 5 1.33296
AVP arginine vasopressin 1.33296
OXT oxytocin/neurophysin I prepropeptide 1.33289
DDRGK1 DDRGK domain containing 1 1.33278
MRPS26 mitochondrial ribosomal protein S26 1.33273
GNRH2 gonadotropin-releasing hormone 2 1.33273
RIF1 replication timing regulatory factor 1 1.33249
LINC00493 long intergenic non-protein coding RNA 493 1.33248
SEC23B Sec23 homolog B (S. cerevisiae) 1.33248
MIR4773-1 microRNA 4773-1 1.33246
MIR4773-2 microRNA 4773-2 1.33246
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 1.33246
MIR3941 microRNA 3941 1.33232
ARMS2 age-related maculopathy susceptibility 2 1.33232
PLEKHA1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 1.33232
DTD1 D-tyrosyl-tRNA deacylase 1 1.33169
NEB nebulin 1.33135
SLC23A2 solute carrier family 23 (ascorbic acid transporter), member 2 1.33027
RASSF2 Ras association (RalGDS/AF-6) domain family member 2 1.32955
AP5S1 adaptor-related protein complex 5, sigma 1 subunit 1.32831
SCRT2 scratch family zinc finger 2 1.32801
OVOL2 ovo-like zinc finger 2 1.32746

low copy number

Symbol Name Standardized Value
CCDC63 coiled-coil domain containing 63 -3.21049
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) -3.21049
CSH2 chorionic somatomammotropin hormone 2 -3.21049
GH2 growth hormone 2 -3.21049
NBPF6 neuroblastoma breakpoint family, member 6 -2.73081
LOC389765 kinesin family member 27 pseudogene -2.59452
SOX2-OT SOX2 overlapping transcript -2.59447
NPY1R neuropeptide Y receptor Y1 -2.4652
NPY5R neuropeptide Y receptor Y5 -2.46517
LINC00639 long intergenic non-protein coding RNA 639 -2.3514
CASP6 caspase 6, apoptosis-related cysteine peptidase -2.32009
PLA2G12A phospholipase A2, group XIIA -2.32009
LINC00536 long intergenic non-protein coding RNA 536 -2.30817
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase -2.21052
BDKRB2 bradykinin receptor B2 -2.19795
SLC44A5 solute carrier family 44, member 5 -2.19238
TNIK TRAF2 and NCK interacting kinase -2.14563
RHOU ras homolog family member U -2.08121
LOC285692 uncharacterized LOC285692 -2.07524
HBG2 hemoglobin, gamma G -2.05934
PCNXL2 pecanex-like 2 (Drosophila) -2.0187
BRI3BP BRI3 binding protein -1.99681
CCDC109B coiled-coil domain containing 109B -1.99447
DCHS2 dachsous cadherin-related 2 -1.93129
MID1 midline 1 -1.92895
PDE4D phosphodiesterase 4D, cAMP-specific -1.87236
TUBBP5 tubulin, beta pseudogene 5 -1.86756
SPATA5 spermatogenesis associated 5 -1.83432
NINJ2 ninjurin 2 -1.80278
ADCY8 adenylate cyclase 8 (brain) -1.78029
LINC00673 long intergenic non-protein coding RNA 673 -1.76208
PTCHD1-AS PTCHD1 antisense RNA (head to head) -1.76093
PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z -1.7593
NCBP2-AS2 NCBP2 antisense RNA 2 (head to head) -1.75135
NCBP2 nuclear cap binding protein subunit 2, 20kDa -1.75112
NEGR1-IT1 NEGR1 intronic transcript 1 -1.73986
DDTL D-dopachrome tautomerase-like -1.68206
NPSR1-AS1 NPSR1 antisense RNA 1 -1.67183
CCNE1 cyclin E1 -1.65747
RARB retinoic acid receptor, beta -1.65636
CLDN10-AS1 CLDN10 antisense RNA 1 -1.6164
GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) -1.61471
ATG7 autophagy related 7 -1.59449
LINC00221 long intergenic non-protein coding RNA 221 -1.58489
CLDN10 claudin 10 -1.58414
OR2G6 olfactory receptor, family 2, subfamily G, member 6 -1.58276
DOCK4 dedicator of cytokinesis 4 -1.57692
ADAM5 ADAM metallopeptidase domain 5 (pseudogene) -1.57075
ADAM3A ADAM metallopeptidase domain 3A (pseudogene) -1.5552
LOC340357 uncharacterized LOC340357 -1.49942
RYR3 ryanodine receptor 3 -1.49302
SLC39A11 solute carrier family 39, member 11 -1.46514
KCNG2 potassium channel, voltage gated modifier subfamily G, member 2 -1.45518
CATSPER2 cation channel, sperm associated 2 -1.43008
CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 -1.41894
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -1.38362
CKMT1A creatine kinase, mitochondrial 1A -1.37558