CA-SKI Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human uterine cervix-derived cell line cell that has the characteristics: Human cell line derived from uterine cervical epidermoid carcinoma. TKG0366(Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0050930)
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Genes

35 genes with high or low copy number in CA-SKI relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LOC441155 zinc finger CCCH-type domain-containing-like 2.49065
PTP4A1 protein tyrosine phosphatase type IVA, member 1 2.49065
PHF3 PHD finger protein 3 2.09431
MIR4693 microRNA 4693 2.09431
DDI1 DNA-damage inducible 1 homolog 1 (S. cerevisiae) 2.09073
PDGFD platelet derived growth factor D 2.08712
EYS eyes shut homolog (Drosophila) 2.08391
TMEM133 transmembrane protein 133 2.08021
CNTN5 contactin 5 2.08021
ARHGAP42 Rho GTPase activating protein 42 2.08021
MIR3920 microRNA 3920 2.07776
TRPC6 transient receptor potential cation channel, subfamily C, member 6 2.07776
PGR progesterone receptor 2.07776
LOC101054525 progesterone receptor antisense RNA 2.07776
MMP1 matrix metallopeptidase 1 2.0752
DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 2.0752
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 2.0752
WTAPP1 Wilms tumor 1 associated protein pseudogene 1 2.0752
MMP8 matrix metallopeptidase 8 2.0752
MMP27 matrix metallopeptidase 27 2.0752
MMP3 matrix metallopeptidase 3 2.0752
MMP13 matrix metallopeptidase 13 2.0752
MMP12 matrix metallopeptidase 12 2.0752
MMP10 matrix metallopeptidase 10 2.0752
ANGPTL5 angiopoietin-like 5 2.0752
CEP126 centrosomal protein 126kDa 2.0731
BIRC3 baculoviral IAP repeat containing 3 2.07006
BIRC2 baculoviral IAP repeat containing 2 2.07006
YAP1 Yes-associated protein 1 2.07006
TMEM123 transmembrane protein 123 2.06989
MMP20 matrix metallopeptidase 20 2.06989
C11ORF70 chromosome 11 open reading frame 70 2.06989
MMP7 matrix metallopeptidase 7 2.06989

low copy number

Symbol Name Standardized Value
SGCZ sarcoglycan, zeta -2.93416
BTNL3 butyrophilin-like 3 -2.72661