CAL-120 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: adenocarcinoma, breast (Cell Line Ontology, CLO_0002179)
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Genes

161 genes with high or low copy number in CAL-120 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 4.51153
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 3.12177
MYBPC1 myosin binding protein C, slow type 3.12177
SYCP3 synaptonemal complex protein 3 3.12177
SPIC Spi-C transcription factor (Spi-1/PU.1 related) 3.12177
ARL1 ADP-ribosylation factor-like 1 3.12177
GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 3.12177
CHPT1 choline phosphotransferase 1 3.12177
SNORD33 small nucleolar RNA, C/D box 33 2.93899
RRAS related RAS viral (r-ras) oncogene homolog 2.93899
DKKL1 dickkopf-like 1 2.93899
FCGRT Fc fragment of IgG, receptor, transporter, alpha 2.93899
PRMT1 protein arginine methyltransferase 1 2.93899
CCDC155 coiled-coil domain containing 155 2.93899
PIH1D1 PIH1 domain containing 1 2.93899
SNORD32A small nucleolar RNA, C/D box 32A 2.93899
CPT1C carnitine palmitoyltransferase 1C 2.93899
AP2A1 adaptor-related protein complex 2, alpha 1 subunit 2.93899
SNORD34 small nucleolar RNA, C/D box 34 2.93899
TSKS testis-specific serine kinase substrate 2.93899
ADM5 adrenomedullin 5 (putative) 2.93899
CD37 CD37 molecule 2.93899
RCN3 reticulocalbin 3, EF-hand calcium binding domain 2.93899
SCAF1 SR-related CTD-associated factor 1 2.93899
ALDH16A1 aldehyde dehydrogenase 16 family, member A1 2.93899
PTH2 parathyroid hormone 2 2.93899
RPL13A ribosomal protein L13a 2.93899
MIR150 microRNA 150 2.93899
BCL2L12 BCL2-like 12 (proline rich) 2.93899
TEAD2 TEA domain family member 2 2.93899
SNORD35A small nucleolar RNA, C/D box 35A 2.93899
MIR5088 microRNA 5088 2.93899
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 2.93899
PRRG2 proline rich Gla (G-carboxyglutamic acid) 2 2.93899
IRF3 interferon regulatory factor 3 2.93899
SNORD35B small nucleolar RNA, C/D box 35B 2.93899
RPS11 ribosomal protein S11 2.93899
PRR12 proline rich 12 2.93899
NOSIP nitric oxide synthase interacting protein 2.93899
FLT3LG fms-related tyrosine kinase 3 ligand 2.93899
PTPRB protein tyrosine phosphatase, receptor type, B 2.76305
KCNMB4 potassium channel subfamily M regulatory beta subunit 4 2.76305
PTPRR protein tyrosine phosphatase, receptor type, R 2.76305
SNX18 sorting nexin 18 2.76305
CNOT2 CCR4-NOT transcription complex, subunit 2 2.64759
RAB3IP RAB3A interacting protein 2.49065
BEST3 bestrophin 3 2.49065
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 2.44392
MIR1279 microRNA 1279 2.44392
MIR3913-1 microRNA 3913-1 2.44392
CCT2 chaperonin containing TCP1, subunit 2 (beta) 2.44392
LRRC10 leucine rich repeat containing 10 2.44392
MIR3913-2 microRNA 3913-2 2.44392
LYZ lysozyme 2.41451
YEATS4 YEATS domain containing 4 2.41451
XRCC6BP1 XRCC6 binding protein 1 2.39327
FRS2 fibroblast growth factor receptor substrate 2 2.39327
DCTN2 dynactin 2 (p50) 2.39327
LOC100506844 uncharacterized LOC100506844 2.36889
CPM carboxypeptidase M 2.35236
LOC100130075 SUZ RNA binding domain containing 1 pseudogene 2.35236
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 2.35236
MIR26A2 microRNA 26a-2 2.3178
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 2.3178
METTL21B methyltransferase like 21B 2.3178
AVIL advillin 2.30944
MARCH9 membrane-associated ring finger (C3HC4) 9 2.30944
DTX3 deltex 3, E3 ubiquitin ligase 2.30944
METTL1 methyltransferase like 1 2.30944
TSFM Ts translation elongation factor, mitochondrial 2.30944
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 2.30944
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 2.30944
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 2.283
AGAP2-AS1 AGAP2 antisense RNA 1 2.283
TSPAN31 tetraspanin 31 2.283
ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25 2.283
SLC26A10 solute carrier family 26, member 10 2.283
CDK4 cyclin-dependent kinase 4 2.283
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 2.283
EXT1 exostosin glycosyltransferase 1 2.20053
SAMD12 sterile alpha motif domain containing 12 2.18778
AP3M2 adaptor-related protein complex 3, mu 2 subunit 2.11167
PLAT plasminogen activator, tissue 2.11167
IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 2.10457
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 2.10317
DKK4 dickkopf WNT signaling pathway inhibitor 4 2.10177
POLB polymerase (DNA directed), beta 2.10177
SMIM19 small integral membrane protein 19 2.10177
VDAC3 voltage-dependent anion channel 3 2.10177
SFRP1 secreted frizzled-related protein 1 2.10038
CHRNB3 cholinergic receptor, nicotinic, beta 3 (neuronal) 2.09529
IDO1 indoleamine 2,3-dioxygenase 1 2.09529
IDO2 indoleamine 2,3-dioxygenase 2 2.09529
CHRNA6 cholinergic receptor, nicotinic, alpha 6 (neuronal) 2.09117
C8ORF4 chromosome 8 open reading frame 4 2.09073
THAP1 THAP domain containing, apoptosis associated protein 1 2.08806
MIR4469 microRNA 4469 2.08806
RNF170 ring finger protein 170 2.08806
ZMAT4 zinc finger, matrin-type 4 2.08781
KCNU1 potassium channel, subfamily U, member 1 2.08712
HOOK3 hook microtubule-tethering protein 3 2.08423
POTEA POTE ankyrin domain family, member A 2.08391
HGSNAT heparan-alpha-glucosaminide N-acetyltransferase 2.08391
FNTA farnesyltransferase, CAAX box, alpha 2.08391
ADAM2 ADAM metallopeptidase domain 2 2.08391
KIF5A kinesin family member 5A 2.07776
RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 2.07776
ADAM32 ADAM metallopeptidase domain 32 2.07776
TACC1 transforming, acidic coiled-coil containing protein 1 2.07776
LSM1 LSM1, U6 small nuclear RNA associated 2.0752
LOC100130964 ADAM metallopeptidase domain 3A-like 2.0752
C8ORF86 chromosome 8 open reading frame 86 2.0752
STAR steroidogenic acute regulatory protein 2.0731
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 2.0731
BAG4 BCL2-associated athanogene 4 2.0731
ADAM18 ADAM metallopeptidase domain 18 2.0731
FGFR1 fibroblast growth factor receptor 1 2.07006
PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B 2.06989
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2.06989
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) 2.06989
WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 2.06707
LETM2 leucine zipper-EF-hand containing transmembrane protein 2 2.06707
ADRB3 adrenoceptor beta 3 2.06626
ERLIN2 ER lipid raft associated 2 2.06626
BRF2 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit 2.06626
PROSC proline synthetase co-transcribed homolog (bacterial) 2.06626
ADGRA2 adhesion G protein-coupled receptor A2 2.06626
ZNF703 zinc finger protein 703 2.06626
LOC728024 chromosome X open reading frame 56 pseudogene 2.06626
RAB11FIP1 RAB11 family interacting protein 1 (class I) 2.06626
DDHD2 DDHD domain containing 2 2.06626
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 2.06473

low copy number

Symbol Name Standardized Value
C16ORF95 chromosome 16 open reading frame 95 -3.2703
SOCS6 suppressor of cytokine signaling 6 -3.14331
OR4M2 olfactory receptor, family 4, subfamily M, member 2 -3.0889
OR4N3P olfactory receptor, family 4, subfamily N, member 3 pseudogene -3.0889
OR4N4 olfactory receptor, family 4, subfamily N, member 4 -3.04873
NRK Nik related kinase -2.969
LOC727924 uncharacterized LOC727924 -2.95958
REREP3 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 -2.95921
CHODL chondrolectin -2.94975
TMPRSS15 transmembrane protease, serine 15 -2.94975
IL1RAPL2 interleukin 1 receptor accessory protein-like 2 -2.93929
CHODL-AS1 CHODL antisense RNA 1 -2.91612
C21ORF91-OT1 C21orf91 overlapping transcript 1 -2.91612
C21ORF91 chromosome 21 open reading frame 91 -2.91612
BTG3 BTG family, member 3 -2.91612
CHEK2P2 checkpoint kinase 2 pseudogene 2 -2.89586
LINC01549 long intergenic non-protein coding RNA 1549 -2.89201
CXADR coxsackie virus and adenovirus receptor -2.89201
GOLGA8CP golgin A8 family, member C, pseudogene -2.86179
HERC2P7 hect domain and RLD 2 pseudogene 7 -2.86179
GOLGA6L6 golgin A6 family-like 6 -2.86179
GSTTP1 glutathione S-transferase theta pseudogene 1 -2.86117
NBEAP1 neurobeachin pseudogene 1 -2.8542
POTEB POTE ankyrin domain family, member B -2.8542
NF1P2 neurofibromin 1 pseudogene 2 -2.8542
HERC2P3 hect domain and RLD 2 pseudogene 3 -2.84875
LOC391322 D-dopachrome tautomerase-like -2.78432
GSTT1 glutathione S-transferase theta 1 -2.78432
GSTTP2 glutathione S-transferase theta pseudogene 2 -2.78432