CAL-12T Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

101 genes with high or low copy number in CAL-12T relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CCDC116 coiled-coil domain containing 116 2.44392
YPEL1 yippee-like 1 (Drosophila) 2.44392
YDJC YdjC homolog (bacterial) 2.44392
LINC00895 long intergenic non-protein coding RNA 895 2.44392
PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 2.41451
SEPT5-GP1BB SEPT5-GP1BB readthrough 2.41451
MIR301B microRNA 301b 2.41451
MIR130B microRNA 130b 2.41451
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 2.41451
TBX1 T-box 1 2.41451
C22ORF29 chromosome 22 open reading frame 29 2.41451
UBE2L3 ubiquitin-conjugating enzyme E2L 3 2.41451
SDF2L1 stromal cell-derived factor 2-like 1 2.41451
MIR1286 microRNA 1286 2.39327
LOC388849 uncharacterized LOC388849 2.39327
MIR4761 microRNA 4761 2.39327
TANGO2 transport and golgi organization 2 homolog (Drosophila) 2.39327
LINC00896 long intergenic non-protein coding RNA 896 2.39327
MIR185 microRNA 185 2.39327
COMT catechol-O-methyltransferase 2.39327
RTN4R reticulon 4 receptor 2.39327
TXNRD2 thioredoxin reductase 2 2.39327
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 2.39327
LOC284865 uncharacterized LOC284865 2.39327
MIR3618 microRNA 3618 2.36889
TRMT2A tRNA methyltransferase 2 homolog A (S. cerevisiae) 2.36889
TMEM191B transmembrane protein 191B 2.36889
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 2.36889
TMEM191C transmembrane protein 191C 2.36889
USP41 ubiquitin specific peptidase 41 2.36889
MIR1306 microRNA 1306 2.36889
DGCR6L DiGeorge syndrome critical region gene 6-like 2.36889
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 2.36889
RANBP1 RAN binding protein 1 2.36889
RIMBP3 RIMS binding protein 3 2.36889
ZDHHC8 zinc finger, DHHC-type containing 8 2.36889
DGCR8 DGCR8 microprocessor complex subunit 2.36889
POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene 2.35236
RIMBP3C RIMS binding protein 3C 2.35236
HIC2 hypermethylated in cancer 2 2.35236
GGT2 gamma-glutamyltransferase 2 2.3178
ZNF74 zinc finger protein 74 2.3178
POM121L7 POM121 transmembrane nucleoporin-like 7 2.3178
MED15 mediator complex subunit 15 2.30944
BCRP2 breakpoint cluster region pseudogene 2 2.30944
SCARF2 scavenger receptor class F, member 2 2.30944
KLHL22 kelch-like family member 22 2.30944
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene 2.283
TMEM191A transmembrane protein 191A (pseudogene) 2.283
POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene 2.283
SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 2.283
SNAP29 synaptosomal-associated protein, 29kDa 2.283
SLC7A4 solute carrier family 7, member 4 2.283
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 2.283
THAP7 THAP domain containing 7 2.26395
TUBA3FP tubulin, alpha 3f, pseudogene 2.26395
LZTR1 leucine-zipper-like transcription regulator 1 2.26395
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like 2.26395
AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 2.26395
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6 2.26395
THAP7-AS1 THAP7 antisense RNA 1 2.26395
NUP155 nucleoporin 155kDa 2.18778
GDNF-AS1 GDNF antisense RNA 1 (head to head) 2.18778
C5ORF42 chromosome 5 open reading frame 42 2.18778
MIR4637 microRNA 4637 2.18778
LOC100130744 uncharacterized LOC100130744 2.18778
ANKH ANKH inorganic pyrophosphate transport regulator 2.18778
DNAH5 dynein, axonemal, heavy chain 5 2.18778
WDR70 WD repeat domain 70 2.18778
GDNF glial cell derived neurotrophic factor 2.18778
FAM105A family with sequence similarity 105, member A 2.18778
TRIO trio Rho guanine nucleotide exchange factor 2.18124
LOC646719 2.18124
NIPBL Nipped-B homolog (Drosophila) 2.18124
LOC340107 uncharacterized LOC340107 2.16307
VPREB1 pre-B lymphocyte 1 2.11467
PRAME preferentially expressed antigen in melanoma 2.10607
LOC648691 2.10607
ZNF280B zinc finger protein 280B 2.10597
ZNF280A zinc finger protein 280A 2.10597
TOP3B topoisomerase (DNA) III beta 2.09628
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F 2.09628
MAPK1 mitogen-activated protein kinase 1 2.09117
BCR breakpoint cluster region 2.0722
LSP1P3 lymphocyte-specific protein 1 pseudogene 3 2.05072
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 2.05045
PRDM9 PR domain containing 9 2.05041
CDH10 cadherin 10, type 2 (T2-cadherin) 2.05014
PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene 2.04969
CDH9 cadherin 9, type 2 (T1-cadherin) 2.04969
CDH18 cadherin 18, type 2 2.0489
GUSBP1 glucuronidase, beta pseudogene 1 2.0489
CDH12 cadherin 12, type 2 (N-cadherin 2) 2.0489
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712

low copy number

Symbol Name Standardized Value
SBNO2 strawberry notch homolog 2 (Drosophila) -3.49112
MRGPRX1 MAS-related GPR, member X1 -3.00044