CAL-27 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human tongue squamous cell carcinoma established from the poorly differentiated squamous cell carcinoma of the tongue removed from a 56-year-old man before treatment in 1982. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000921)
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Genes

88 genes with high or low copy number in CAL-27 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
NAT10 N-acetyltransferase 10 (GCN5-related) 2.93899
EHF ets homologous factor 2.93899
CAT catalase 2.93899
RPPH1 ribonuclease P RNA component H1 2.76305
OR11H6 olfactory receptor, family 11, subfamily H, member 6 2.76305
PARP2 poly (ADP-ribose) polymerase 2 2.76305
CCNB1IP1 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase 2.76305
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 2.76305
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 2.76305
RNASE6 ribonuclease, RNase A family, k6 2.76305
RNASE9 ribonuclease, RNase A family, 9 (non-active) 2.76305
ANG angiogenin, ribonuclease, RNase A family, 5 2.76305
EDDM3B epididymal protein 3B 2.76305
EDDM3A epididymal protein 3A 2.76305
TTC5 tetratricopeptide repeat domain 5 2.76305
OR11H4 olfactory receptor, family 11, subfamily H, member 4 2.76305
TMEM55B transmembrane protein 55B 2.76305
KLHL33 kelch-like family member 33 2.76305
RNASE11 ribonuclease, RNase A family, 11 (non-active) 2.76305
RNASE10 ribonuclease, RNase A family, 10 (non-active) 2.76305
OSGEP O-sialoglycoprotein endopeptidase 2.76305
SNORD126 small nucleolar RNA, C/D box 126 2.76305
RNASE12 ribonuclease, RNase A family, 12 (non-active) 2.76305
TEP1 telomerase-associated protein 1 2.76305
PNP purine nucleoside phosphorylase 2.76305
RNASE4 ribonuclease, RNase A family, 4 2.76305
OR6S1 olfactory receptor, family 6, subfamily S, member 1 2.76305
SLC39A2 solute carrier family 39 (zinc transporter), member 2 2.64759
TPPP2 tubulin polymerization-promoting protein family member 2 2.64759
ARHGEF40 Rho guanine nucleotide exchange factor (GEF) 40 2.64759
RNASE8 ribonuclease, RNase A family, 8 2.64759
RNASE7 ribonuclease, RNase A family, 7 2.64759
METTL17 methyltransferase like 17 2.64759
NDRG2 NDRG family member 2 2.64759
RNASE13 ribonuclease, RNase A family, 13 (non-active) 2.64759
C11ORF74 chromosome 11 open reading frame 74 2.59653
RAG1 recombination activating gene 1 2.59653
RAG2 recombination activating gene 2 2.59653
TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase 2.59653
TRIM44 tripartite motif containing 44 2.49065
FJX1 four jointed box 1 (Drosophila) 2.49065
PAMR1 peptidase domain containing associated with muscle regeneration 1 2.49065
MISO1 mitochondrial inner membrane subdomain organizer 1 2.49065
PLCH1 phospholipase C, eta 1 2.49065
MIR3973 microRNA 3973 2.49065
PDHX pyruvate dehydrogenase complex, component X 2.44392
GMPS guanine monphosphate synthase 2.44392
APIP APAF1 interacting protein 2.44392
MIR1343 microRNA 1343 2.44392
SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 2.44392
KCNAB1-AS2 KCNAB1 antisense RNA 2 2.44392
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 2.44392
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 2.41451
KCNAB1 potassium channel, voltage gated subfamily A regulatory beta subunit 1 2.41451
PA2G4P4 proliferation-associated 2G4 pseudogene 4 2.41451
TIPARP-AS1 TIPARP antisense RNA 1 2.41451
SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) 2.41451
LINC00886 long intergenic non-protein coding RNA 886 2.41451
KCNAB1-AS1 KCNAB1 antisense RNA 1 2.41451
SNORA79 small nucleolar RNA, H/ACA box 79 2.41451
SUCNR1 succinate receptor 1 2.39327
LEKR1 leucine, glutamate and lysine rich 1 2.39327
CD44 CD44 molecule (Indian blood group) 2.39327
CCNL1 cyclin L1 2.39327
LINC00880 long intergenic non-protein coding RNA 880 2.39327
MBNL1 muscleblind-like splicing regulator 1 2.39327
MBNL1-AS1 MBNL1 antisense RNA 1 2.39327
LINC00881 long intergenic non-protein coding RNA 881 2.39327
PTX3 pentraxin 3, long 2.39327
VEPH1 ventricular zone expressed PH domain-containing 1 2.36889
PQLC2L PQ loop repeat containing 2-like 2.36889
UTRN utrophin 2.14311
MIR5688 microRNA 5688 2.1316
ELF5 E74-like factor 5 (ets domain transcription factor) 2.12703
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 2.12703
CADM2-AS2 CADM2 antisense RNA 2 2.12484
RNASE3 ribonuclease, RNase A family, 3 2.12225
CADM2 cell adhesion molecule 2 2.11435
RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 2.11167
ECRP ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) pseudogene 2.11167
PRR5L proline rich 5 like 2.09431
COMMD9 COMM domain containing 9 2.09431
LDLRAD3 low density lipoprotein receptor class A domain containing 3 2.09073
MIR548H2 microRNA 548h-2 2.08334
AADAC arylacetamide deacetylase 2.08334

low copy number

Symbol Name Standardized Value
LINC00606 long intergenic non-protein coding RNA 606 -3.32901
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 -3.08208
FFAR3 free fatty acid receptor 3 -2.76158