CAL-39 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0002184)
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Genes

464 genes with high or low copy number in CAL-39 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
KAT5 K(lysine) acetyltransferase 5 4.51153
MAP3K11 mitogen-activated protein kinase kinase kinase 11 4.51153
MIR4489 microRNA 4489 4.51153
OVOL1 ovo-like zinc finger 1 4.51153
SIPA1 signal-induced proliferation-associated 1 4.51153
SSSCA1-AS1 SSSCA1 antisense RNA 1 (head to head) 4.51153
MIR4690 microRNA 4690 4.51153
KCNK7 potassium channel, two pore domain subfamily K, member 7 4.51153
SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 4.51153
RNASEH2C ribonuclease H2, subunit C 4.51153
AP5B1 adaptor-related protein complex 5, beta 1 subunit 4.51153
FAM89B family with sequence similarity 89, member B 4.51153
SNX32 sorting nexin 32 4.51153
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A 4.51153
EHBP1L1 EH domain binding protein 1-like 1 4.51153
PCNXL3 pecanex-like 3 (Drosophila) 4.51153
SART1 squamous cell carcinoma antigen recognized by T cells 3.12177
MIR194-2 microRNA 194-2 3.12177
EFEMP2 EGF containing fibulin-like extracellular matrix protein 2 3.12177
BANF1 barrier to autointegration factor 1 3.12177
FOSL1 FOS-like antigen 1 3.12177
CCDC85B coiled-coil domain containing 85B 3.12177
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 3.12177
SCYL1 SCY1-like 1 (S. cerevisiae) 3.12177
TSGA10IP testis specific, 10 interacting protein 3.12177
LTBP3 latent transforming growth factor beta binding protein 3 3.12177
CTSW cathepsin W 3.12177
MUS81 MUS81 structure-specific endonuclease subunit 3.12177
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 3.12177
MIR1973 microRNA 1973 3.12177
CFL1 cofilin 1 (non-muscle) 3.12177
C11ORF68 chromosome 11 open reading frame 68 3.12177
ATG2A autophagy related 2A 3.12177
MIR192 microRNA 192 3.12177
FIBP fibroblast growth factor (acidic) intracellular binding protein 3.12177
CST6 cystatin E/M 3.12177
SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 3.12177
SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12 3.12177
EIF1AD eukaryotic translation initiation factor 1A domain containing 3.12177
ARL2 ADP-ribosylation factor-like 2 2.93899
PYGM phosphorylase, glycogen, muscle 2.93899
C11ORF95 chromosome 11 open reading frame 95 2.93899
NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 2.93899
RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 2.93899
CDCA5 cell division cycle associated 5 2.93899
NRXN2 neurexin 2 2.93899
SLC22A20 solute carrier family 22, member 20 2.93899
EHD1 EH-domain containing 1 2.93899
PPP2R5B protein phosphatase 2, regulatory subunit B', beta 2.93899
VPS51 vacuolar protein sorting 51 homolog (S. cerevisiae) 2.93899
SAC3D1 SAC3 domain containing 1 2.93899
BAD BCL2-associated agonist of cell death 2.93899
POLA2 polymerase (DNA directed), alpha 2, accessory subunit 2.93899
PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B 2.93899
DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4 2.93899
MEN1 multiple endocrine neoplasia I 2.93899
CATSPER1 cation channel, sperm associated 1 2.93899
ZFPL1 zinc finger protein-like 1 2.93899
ARL2-SNX15 ARL2-SNX15 readthrough (NMD candidate) 2.93899
TEX40 testis expressed 40 2.93899
C11ORF84 chromosome 11 open reading frame 84 2.93899
LOC100996455 uncharacterized LOC100996455 2.93899
MRPL49 mitochondrial ribosomal protein L49 2.93899
CDC42BPG CDC42 binding protein kinase gamma (DMPK-like) 2.93899
NUDT22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 2.93899
VEGFB vascular endothelial growth factor B 2.93899
MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2.93899
CCDC88B coiled-coil domain containing 88B 2.93899
MIR1237 microRNA 1237 2.93899
PRDX5 peroxiredoxin 5 2.93899
SF3B2 splicing factor 3b, subunit 2, 145kDa 2.93899
ZNHIT2 zinc finger, HIT-type containing 2 2.93899
RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 2.93899
CAPN1 calpain 1, (mu/I) large subunit 2.93899
FKBP2 FK506 binding protein 2, 13kDa 2.93899
SF1 splicing factor 1 2.93899
C11ORF85 chromosome 11 open reading frame 85 2.93899
FERMT3 fermitin family member 3 2.93899
SYVN1 synovial apoptosis inhibitor 1, synoviolin 2.93899
PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific) 2.93899
BATF2 basic leucine zipper transcription factor, ATF-like 2 2.93899
FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 2.93899
STIP1 stress-induced phosphoprotein 1 2.93899
SPDYC speedy/RINGO cell cycle regulator family member C 2.93899
TM7SF2 transmembrane 7 superfamily member 2 2.93899
TRPT1 tRNA phosphotransferase 1 2.93899
FLRT1 fibronectin leucine rich transmembrane protein 1 2.93899
GPHA2 glycoprotein hormone alpha 2 2.93899
ESRRA estrogen-related receptor alpha 2.93899
KCNK4 potassium channel, two pore domain subfamily K, member 4 2.93899
GPR137 G protein-coupled receptor 137 2.93899
TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) 2.93899
GAL3ST3 galactose-3-O-sulfotransferase 3 2.93899
RTN3 reticulon 3 2.76305
RCOR2 REST corepressor 2 2.76305
MARK2 MAP/microtubule affinity-regulating kinase 2 2.76305
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) 2.76305
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2.76305
MACROD1 MACRO domain containing 1 2.76305
NAA40 N(alpha)-acetyltransferase 40, NatD catalytic subunit 2.76305
CPA3 carboxypeptidase A3 (mast cell) 2.64759
GYG1 glycogenin 1 2.64759
AGTR1 angiotensin II receptor, type 1 2.64759
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 2.64759
CP ceruloplasmin (ferroxidase) 2.64759
TM4SF18 transmembrane 4 L six family member 18 2.64759
ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 2.64759
MME membrane metallo-endopeptidase 2.64759
HLTF-AS1 HLTF antisense RNA 1 2.64759
TM4SF1 transmembrane 4 L six family member 1 2.64759
HPS3 Hermansky-Pudlak syndrome 3 2.64759
CPB1 carboxypeptidase B1 (tissue) 2.64759
LOC100507537 uncharacterized LOC100507537 2.64759
HLTF helicase-like transcription factor 2.64759
TM4SF4 transmembrane 4 L six family member 4 2.59653
ARHGEF26-AS1 ARHGEF26 antisense RNA 1 2.59653
C3ORF79 chromosome 3 open reading frame 79 2.59653
GPR149 G protein-coupled receptor 149 2.59653
KLC2 kinesin light chain 2 2.49065
PACS1 phosphofurin acidic cluster sorting protein 1 2.49065
YIF1A Yip1 interacting factor homolog A (S. cerevisiae) 2.49065
LOC646903 uncharacterized LOC646903 2.49065
WWTR1 WW domain containing transcription regulator 1 2.49065
CNIH2 cornichon family AMPA receptor auxiliary protein 2 2.49065
PFN2 profilin 2 2.49065
COMMD2 COMM domain containing 2 2.49065
ANKUB1 ankyrin repeat and ubiquitin domain containing 1 2.49065
RAP2B RAP2B, member of RAS oncogene family 2.49065
PLCH1 phospholipase C, eta 1 2.49065
MISO1 mitochondrial inner membrane subdomain organizer 1 2.49065
BRMS1 breast cancer metastasis suppressor 1 2.49065
RIN1 Ras and Rab interactor 1 2.49065
B3GNT1 2.49065
WWTR1-AS1 WWTR1 antisense RNA 1 2.49065
CD248 CD248 molecule, endosialin 2.49065
RAB1B RAB1B, member RAS oncogene family 2.49065
SLC29A2 solute carrier family 29 (equilibrative nucleoside transporter), member 2 2.49065
RNF13 ring finger protein 13 2.49065
NPAS4 neuronal PAS domain protein 4 2.49065
TMEM151A transmembrane protein 151A 2.49065
P2RY14 purinergic receptor P2Y, G-protein coupled, 14 2.44392
P2RY12 purinergic receptor P2Y, G-protein coupled, 12 2.44392
SERP1 stress-associated endoplasmic reticulum protein 1 2.44392
TSC22D2 TSC22 domain family, member 2 2.44392
SIAH2 siah E3 ubiquitin protein ligase 2 2.44392
MED12L mediator complex subunit 12-like 2.44392
EIF2A eukaryotic translation initiation factor 2A, 65kDa 2.44392
PELI3 pellino E3 ubiquitin protein ligase family member 3 2.44392
RBM14 RNA binding motif protein 14 2.44392
CTSF cathepsin F 2.44392
SELT selenoprotein T 2.44392
SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 2.44392
CCDC87 coiled-coil domain containing 87 2.44392
ZDHHC24 zinc finger, DHHC-type containing 24 2.44392
CLRN1-AS1 CLRN1 antisense RNA 1 2.44392
ACTN3 actinin, alpha 3 (gene/pseudogene) 2.44392
KCNAB1-AS2 KCNAB1 antisense RNA 2 2.44392
CLRN1 clarin 1 2.44392
RARRES1 retinoic acid receptor responder (tazarotene induced) 1 2.44392
CCS copper chaperone for superoxide dismutase 2.44392
GMPS guanine monphosphate synthase 2.44392
GPR171 G protein-coupled receptor 171 2.44392
FAM168A family with sequence similarity 168, member A 2.44392
RELT RELT tumor necrosis factor receptor 2.44392
IGSF10 immunoglobulin superfamily, member 10 2.44392
BBS1 Bardet-Biedl syndrome 1 2.44392
P2RY1 purinergic receptor P2Y, G-protein coupled, 1 2.44392
P2RY13 purinergic receptor P2Y, G-protein coupled, 13 2.44392
MIR5186 microRNA 5186 2.44392
MRPL11 mitochondrial ribosomal protein L11 2.44392
GPR87 G protein-coupled receptor 87 2.44392
MIR4692 microRNA 4692 2.41451
SPTSSB serine palmitoyltransferase, small subunit B 2.41451
MLF1 myeloid leukemia factor 1 2.41451
TMEM14E transmembrane protein 14E 2.41451
LXN latexin 2.41451
STARD10 StAR-related lipid transfer (START) domain containing 10 2.41451
ATG16L2 autophagy related 16-like 2 (S. cerevisiae) 2.41451
PA2G4P4 proliferation-associated 2G4 pseudogene 4 2.41451
DPP3 dipeptidyl-peptidase 3 2.41451
MIR3919 microRNA 3919 2.41451
SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) 2.41451
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 2.41451
MIR139 microRNA 139 2.41451
P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 2.41451
ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 2.41451
GFM1 G elongation factor, mitochondrial 1 2.41451
KCNAB1 potassium channel, voltage gated subfamily A regulatory beta subunit 1 2.41451
RBM4B RNA binding motif protein 4B 2.41451
KCNAB1-AS1 KCNAB1 antisense RNA 1 2.41451
RBM14-RBM4 RBM14-RBM4 readthrough 2.41451
TIPARP-AS1 TIPARP antisense RNA 1 2.41451
LINC00886 long intergenic non-protein coding RNA 886 2.41451
P2RY2 purinergic receptor P2Y, G-protein coupled, 2 2.41451
ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 2.41451
SPTBN2 spectrin, beta, non-erythrocytic 2 2.41451
RBM4 RNA binding motif protein 4 2.41451
PDE2A phosphodiesterase 2A, cGMP-stimulated 2.41451
LOC101243545 uncharacterized LOC101243545 2.41451
AADACL2 arylacetamide deacetylase-like 2 2.41451
C11ORF86 chromosome 11 open reading frame 86 2.39327
SYT12 synaptotagmin XII 2.39327
PTX3 pentraxin 3, long 2.39327
LEKR1 leucine, glutamate and lysine rich 1 2.39327
OTOL1 otolin 1 2.39327
CCNL1 cyclin L1 2.39327
MIR16-2 microRNA 16-2 2.39327
C3ORF80 chromosome 3 open reading frame 80 2.39327
C11ORF80 chromosome 11 open reading frame 80 2.39327
INPPL1 inositol polyphosphate phosphatase-like 1 2.39327
LINC00880 long intergenic non-protein coding RNA 880 2.39327
LINC00881 long intergenic non-protein coding RNA 881 2.39327
IFT80 intraflagellar transport 80 2.39327
MBNL1 muscleblind-like splicing regulator 1 2.39327
NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 2.39327
LRFN4 leucine rich repeat and fibronectin type III domain containing 4 2.39327
MBNL1-AS1 MBNL1 antisense RNA 1 2.39327
B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2.39327
TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 2.39327
SCHIP1 schwannomin interacting protein 1 2.39327
TRIM59 tripartite motif containing 59 2.39327
SHOX2 short stature homeobox 2 2.39327
MIR4691 microRNA 4691 2.39327
NMD3 NMD3 ribosome export adaptor 2.39327
RCE1 Ras converting CAAX endopeptidase 1 2.39327
FCHSD2 FCH and double SH3 domains 2 2.39327
IL12A interleukin 12A 2.39327
PC pyruvate carboxylase 2.39327
RSRC1 arginine/serine-rich coiled-coil 1 2.39327
MIR15B microRNA 15b 2.39327
PHOX2A paired-like homeobox 2a 2.39327
SUCNR1 succinate receptor 1 2.39327
ALDH3B1 aldehyde dehydrogenase 3 family, member B1 2.39327
RHOD ras homolog family member D 2.39327
SMC4 structural maintenance of chromosomes 4 2.39327
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2.36889
KPNA4 karyopherin alpha 4 (importin alpha 3) 2.36889
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L 2.36889
PQLC2L PQ loop repeat containing 2-like 2.36889
ARL14 ADP-ribosylation factor-like 14 2.36889
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 2.36889
LOC100130987 uncharacterized LOC100130987 2.36889
CHKA choline kinase alpha 2.36889
DEFB108B defensin, beta 108B 2.36889
VEPH1 ventricular zone expressed PH domain-containing 1 2.36889
POLD4 polymerase (DNA-directed), delta 4, accessory subunit 2.36889
FOLR1 folate receptor 1 (adult) 2.36889
TBC1D10C TBC1 domain family, member 10C 2.36889
ALDH3B2 aldehyde dehydrogenase 3 family, member B2 2.36889
FOLR2 folate receptor 2 (fetal) 2.36889
ADRBK1 adrenergic, beta, receptor kinase 1 2.36889
SCARNA7 small Cajal body-specific RNA 7 2.36889
C11ORF24 chromosome 11 open reading frame 24 2.36889
FOLR3 folate receptor 3 (gamma) 2.36889
FAM86C1 family with sequence similarity 86, member C1 2.36889
SSH3 slingshot protein phosphatase 3 2.36889
CLCF1 cardiotrophin-like cytokine factor 1 2.36889
ALG1L9P asparagine-linked glycosylation 1-like 9, pseudogene 2.36889
ANKRD13D ankyrin repeat domain 13 family, member D 2.36889
RAD9A RAD9 homolog A (S. pombe) 2.36889
NKAIN3 Na+/K+ transporting ATPase interacting 3 2.36889
UNC93B1 unc-93 homolog B1 (C. elegans) 2.36889
KDM2A lysine (K)-specific demethylase 2A 2.35236
AIP aryl hydrocarbon receptor interacting protein 2.35236
ANAPC15 anaphase promoting complex subunit 15 2.35236
TBX10 T-box 10 2.35236
CABP2 calcium binding protein 2 2.35236
PTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein 2.35236
TMEM134 transmembrane protein 134 2.35236
CORO1B coronin, actin binding protein, 1B 2.35236
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 2.35236
NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 2.35236
SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 2.35236
ASPH aspartate beta-hydroxylase 2.35236
ACY3 aminoacylase 3 2.35236
CDK2AP2 cyclin-dependent kinase 2 associated protein 2 2.35236
RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 2.35236
GPR152 G protein-coupled receptor 152 2.35236
CARNS1 carnosine synthase 1 2.35236
CABP4 calcium binding protein 4 2.35236
DOC2GP double C2-like domains, gamma, pseudogene 2.35236
MIR4470 microRNA 4470 2.35236
LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2.35236
MIR3165 microRNA 3165 2.3178
IL18BP interleukin 18 binding protein 2.3178
LOC100129216 beta-defensin 131-like 2.3178
NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 2.3178
RNF121 ring finger protein 121 2.3178
NUMA1 nuclear mitotic apparatus protein 1 2.3178
LOC100133315 transient receptor potential cation channel, subfamily C, member 2-like 2.3178
NCEH1 neutral cholesterol ester hydrolase 1 2.3178
C11ORF72 chromosome 11 open reading frame 72 2.3178
LRP5 low density lipoprotein receptor-related protein 5 2.3178
GSTP1 glutathione S-transferase pi 1 2.3178
LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2.3178
GHSR growth hormone secretagogue receptor 2.30944
ECT2 epithelial cell transforming 2 2.30944
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 2.30944
SPATA16 spermatogenesis associated 16 2.283
RPL22L1 ribosomal protein L22-like 1 2.283
EIF5A2 eukaryotic translation initiation factor 5A2 2.283
KRTAP5-9 keratin associated protein 5-9 2.26395
CLDN11 claudin 11 2.26395
KRTAP5-7 keratin associated protein 5-7 2.26395
SLC7A14 solute carrier family 7, member 14 2.26395
NLGN1 neuroligin 1 2.26395
KRTAP5-11 keratin associated protein 5-11 2.26395
KRTAP5-8 keratin associated protein 5-8 2.26395
GAL galanin/GMAP prepropeptide 2.25904
NADSYN1 NAD synthetase 1 2.25904
SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2 2.25904
PRKCI protein kinase C, iota 2.25904
LOC100128164 four and a half LIM domains 1 pseudogene 2.25904
MIR569 microRNA 569 2.25904
GPR160 G protein-coupled receptor 160 2.25904
TNIK TRAF2 and NCK interacting kinase 2.25904
KRTAP5-10 keratin associated protein 5-10 2.25904
SKIL SKI-like proto-oncogene 2.25904
SEC62 SEC62 homolog (S. cerevisiae) 2.25904
DHCR7 7-dehydrocholesterol reductase 2.24845
PHC3 polyhomeotic homolog 3 (Drosophila) 2.24845
SAMD7 sterile alpha motif domain containing 7 2.24845
FLJ42102 uncharacterized LOC399923 2.24845
MTL5 metallothionein-like 5, testis-specific (tesmin) 2.24845
LRRC31 leucine rich repeat containing 31 2.24139
LRRIQ4 leucine-rich repeats and IQ motif containing 4 2.24139
LRRC34 leucine rich repeat containing 34 2.24139
CPT1A carnitine palmitoyltransferase 1A (liver) 2.24139
KCNK9 potassium channel, two pore domain subfamily K, member 9 2.24139
ACTRT3 actin-related protein T3 2.2355
TRAPPC9 trafficking protein particle complex 9 2.2355
TERC telomerase RNA component 2.2355
MYNN myoneurin 2.2355
MRPL21 mitochondrial ribosomal protein L21 2.23078
IGHMBP2 immunoglobulin mu binding protein 2 2.23078
COL22A1 collagen, type XXII, alpha 1 2.22917
MRGPRD MAS-related GPR, member D 2.22783
MIR30B microRNA 30b 2.22633
MRGPRF MAS-related GPR, member F 2.22633
MIR30D microRNA 30d 2.22633
FAM135B family with sequence similarity 135, member B 2.22633
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
LOC286094 2.22558
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 2.22558
ZFAT zinc finger and AT hook domain containing 2.22291
MIR3664 microRNA 3664 2.22291
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
HHLA1 HERV-H LTR-associating 1 2.21258
TPCN2 two pore segment channel 2 2.21258
OC90 otoconin 90 2.21096
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
ASAP1-IT1 ASAP1 intronic transcript 1 2.20053
MIR5194 microRNA 5194 2.20053
FAM49B family with sequence similarity 49, member B 2.19863
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 2.19863
ADCY8 adenylate cyclase 8 (brain) 2.19301
DERL1 derlin 1 2.18778
SACK1A scaffolding CK1 anchoring protein A 2.18778
ZHX2 zinc fingers and homeoboxes 2 2.18778
FAM83A-AS1 FAM83A antisense RNA 1 2.18778
GSDMC gasdermin C 2.18778
MIR4663 microRNA 4663 2.18124
C8ORF76 chromosome 8 open reading frame 76 2.18124
KLHL38 kelch-like family member 38 2.17694
HAS2 hyaluronan synthase 2 2.16947
HAS2-AS1 HAS2 antisense RNA 1 2.16947
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 2.16947
ZHX1 zinc fingers and homeoboxes 1 2.16947
FBXO32 F-box protein 32 2.16947
ATAD2 ATPase family, AAA domain containing 2 2.16947
MTBP MDM2 binding protein 2.16947
WDYHV1 WDYHV motif containing 1 2.16947
MTSS1 metastasis suppressor 1 2.16816
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 2.16816
ANXA13 annexin A13 2.16816
TATDN1 TatD DNase domain containing 1 2.16816
COL14A1 collagen, type XIV, alpha 1 2.16625
FAM91A1 family with sequence similarity 91, member A1 2.16625
FER1L6-AS1 FER1L6 antisense RNA 1 2.16625
MRPL13 mitochondrial ribosomal protein L13 2.16625
ZNF572 zinc finger protein 572 2.16564
MIR548K microRNA 548k 2.16564
FADD Fas (TNFRSF6)-associated via death domain 2.16564
KIAA0196 KIAA0196 2.16459
SQLE squalene epoxidase 2.16459
FER1L6 fer-1-like family member 6 2.16459
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
MYEOV myeloma overexpressed 2.16459
FGF3 fibroblast growth factor 3 2.16307
CTTN cortactin 2.16307
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
FGF4 fibroblast growth factor 4 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
LINC00861 long intergenic non-protein coding RNA 861 2.15967
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
FAM84B family with sequence similarity 84, member B 2.15847
SEL1L3 sel-1 suppressor of lin-12-like 3 (C. elegans) 2.15402
SMIM20 small integral membrane protein 20 2.15402
SLC34A2 solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 2.15402
TBC1D19 TBC1 domain family, member 19 2.14508
STIM2 stromal interaction molecule 2 2.14311
RBPJ recombination signal binding protein for immunoglobulin kappa J region 2.14311
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 2.14311
CCKAR cholecystokinin A receptor 2.14311
FRMD8 FERM domain containing 8 2.14311
DPF2 D4, zinc and double PHD fingers family 2 2.14116
TIGD3 tigger transposable element derived 3 2.14116
SLC25A45 solute carrier family 25, member 45 2.14116
CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 2.12703
SNORD74 small nucleolar RNA, C/D box 74 2.10607
ABCD2 ATP-binding cassette, sub-family D (ALD), member 2 2.09529
C12ORF40 chromosome 12 open reading frame 40 2.09529
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 2.09117
MFSD1 major facilitator superfamily domain containing 1 2.09073
IQCJ IQ motif containing J 2.09073
LRRK2 leucine-rich repeat kinase 2 2.08781
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
MIR548AR microRNA 548ar 2.08423
AADAC arylacetamide deacetylase 2.08334
MIR548H2 microRNA 548h-2 2.08334
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough 2.08334
MUC19 mucin 19, oligomeric 2.08066
FAM86C2P family with sequence similarity 86, member A pseudogene 2.07822
TMEM212 transmembrane protein 212 2.0731
PLD1 phospholipase D1, phosphatidylcholine-specific 2.0731
FNDC3B fibronectin type III domain containing 3B 2.0731
PPP6R3 protein phosphatase 6, regulatory subunit 3 2.06989
SI sucrase-isomaltase (alpha-glucosidase) 2.06505
SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 2.06473
SLITRK3 SLIT and NTRK-like family, member 3 2.06473
BCHE butyrylcholinesterase 2.06473
ZBBX zinc finger, B-box domain containing 2.06316
GOLIM4 golgi integral membrane protein 4 2.06316
WDR49 WD repeat domain 49 2.06316
PDCD10 programmed cell death 10 2.06316
SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 2.06316
MIR551B microRNA 551b 2.0622
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
EGFEM1P EGF-like and EMI domain containing 1, pseudogene 2.06105
MECOM MDS1 and EVI1 complex locus 2.06061
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
SLA Src-like-adaptor 2.05778
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
PHF20L1 PHD finger protein 20-like 1 2.05441
TMEM71 transmembrane protein 71 2.05422
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
TG thyroglobulin 2.054
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731

low copy number

Symbol Name Standardized Value
IGKV3-11 immunoglobulin kappa variable 3-11 -3.14331