CAL-54 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

154 genes with high or low copy number in CAL-54 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
NME8 NME/NM23 family member 8 2.64759
SFRP4 secreted frizzled-related protein 4 2.64759
STARD3NL STARD3 N-terminal like 2.64759
EPDR1 ependymin related 1 2.64759
GPR141 G protein-coupled receptor 141 2.64759
HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2.59653
BLVRA biliverdin reductase A 2.59653
URGCP upregulator of cell proliferation 2.59653
AMPH amphiphysin 2.59653
SEPT7 septin 7 2.59653
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 2.59653
URGCP-MRPS24 URGCP-MRPS24 readthrough 2.59653
C7ORF25 chromosome 7 open reading frame 25 2.59653
SNHG15 small nucleolar RNA host gene 15 2.59653
STK17A serine/threonine kinase 17a 2.59653
KIAA0895 KIAA0895 2.59653
MRPS24 mitochondrial ribosomal protein S24 2.59653
FAM183B acyloxyacyl hydrolase (neutrophil) 2.59653
PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 2.59653
PGAM2 phosphoglycerate mutase 2 (muscle) 2.59653
NUDCD3 NudC domain containing 3 2.59653
DBNL drebrin-like 2.59653
MYO1G myosin IG 2.59653
HERPUD2 HERPUD family member 2 2.59653
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) 2.59653
TBRG4 transforming growth factor beta regulator 4 2.59653
MYL7 myosin, light chain 7, regulatory 2.59653
RASA4CP RAS p21 protein activator 4C, pseudogene 2.59653
RAMP3 receptor (G protein-coupled) activity modifying protein 3 2.59653
NPC1L1 NPC1-like 1 2.59653
POLM polymerase (DNA directed), mu 2.59653
LOC100506895 uncharacterized LOC100506895 2.59653
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 2.59653
ELMO1 engulfment and cell motility 1 2.59653
UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2.59653
ANLN anillin, actin binding protein 2.59653
SNORA5C small nucleolar RNA, H/ACA box 5C 2.59653
MIR1200 microRNA 1200 2.59653
AOAH-IT1 AOAH intronic transcript 1 2.59653
MRPL32 mitochondrial ribosomal protein L32 2.59653
CAMK2B calcium/calmodulin-dependent protein kinase II beta 2.59653
MIR3943 microRNA 3943 2.59653
GLI3 GLI family zinc finger 3 2.59653
AEBP1 AE binding protein 1 2.59653
TMED4 transmembrane emp24 protein transport domain containing 4 2.59653
POLD2 polymerase (DNA directed), delta 2, accessory subunit 2.59653
SNORA5B small nucleolar RNA, H/ACA box 5B 2.59653
LINC00957 long intergenic non-protein coding RNA 957 2.59653
GCK glucokinase (hexokinase 4) 2.59653
NACAD NAC alpha domain containing 2.59653
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 2.59653
MIR4649 microRNA 4649 2.59653
VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) 2.59653
AOAH acyloxyacyl hydrolase (neutrophil) 2.59653
SPDYE1 speedy/RINGO cell cycle regulator family member E1 2.59653
POLR2J4 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene 2.59653
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2.59653
CCM2 cerebral cavernous malformation 2 2.59653
PPIA peptidylprolyl isomerase A (cyclophilin A) 2.49065
IGFBP3 insulin-like growth factor binding protein 3 2.49065
IGFBP1 insulin-like growth factor binding protein 1 2.49065
PURB purine-rich element binding protein B 2.49065
ZMIZ2 zinc finger, MIZ-type containing 2 2.49065
POU6F2-AS1 POU6F2 antisense RNA 1 2.49065
H2AFV H2A histone family, member V 2.49065
YAE1D1 Yae1 domain containing 1 2.44392
ADCY1 adenylate cyclase 1 (brain) 2.44392
POU6F2 POU class 6 homeobox 2 2.44392
CDK13 cyclin-dependent kinase 13 2.44392
MPLKIP M-phase specific PLK1 interacting protein 2.44392
RALA v-ral simian leukemia viral oncogene homolog A (ras related) 2.44392
SEPT7P2 septin 7 pseudogene 2 2.44392
LOC646999 akirin 1 pseudogene 2.44392
INHBA-AS1 INHBA antisense RNA 1 2.41451
INHBA inhibin, beta A 2.41451
CDC14C cell division cycle 14C 2.41451
VWC2 von Willebrand factor C domain containing 2 2.39327
FIGNL1 fidgetin-like 1 2.39327
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 2.36889
ZPBP zona pellucida binding protein 2.36889
IKZF1 IKAROS family zinc finger 1 (Ikaros) 2.36889
C7ORF72 chromosome 7 open reading frame 72 2.36889
GRB10 growth factor receptor-bound protein 10 2.3178
LOC100130849 phosphorylase kinase, gamma 1 (muscle) pseudogene 2.30944
COBL cordon-bleu WH2 repeat protein 2.30944
MIR3147 microRNA 3147 2.30944
DKFZP434L192 uncharacterized protein DKFZp434L192 2.283
GUSBP10 glucuronidase, beta pseudogene 10 2.283
ZNF716 zinc finger protein 716 2.283
LOC650226 ankyrin repeat domain 26 pseudogene 2.283
TES testin LIM domain protein 2.26395
TFEC transcription factor EC 2.26395
CAV2 caveolin 2 2.25904
MIR4283-1 microRNA 4283-1 2.25904
POM121L12 POM121 transmembrane nucleoporin-like 12 2.24845
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 2.24845
CAV1 caveolin 1, caveolae protein, 22kDa 2.24845
PSPH phosphoserine phosphatase 2.24845
NUPR1L nuclear protein, transcriptional regulator, 1-like 2.24845
SUMF2 sulfatase modifying factor 2 2.24845
CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 2.24845
PHKG1 phosphorylase kinase, gamma 1 (muscle) 2.24845
SNORA15 small nucleolar RNA, H/ACA box 15 2.24845
ST7-AS1 ST7 antisense RNA 1 2.24139
MRPS17 mitochondrial ribosomal protein S17 2.24139
GBAS glioblastoma amplified sequence 2.24139
ST7-OT4 ST7 overlapping transcript 4 2.24139
ST7 suppression of tumorigenicity 7 2.24139
ZNF713 zinc finger protein 713 2.24139
MET MET proto-oncogene, receptor tyrosine kinase 2.2355
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 2.2355
SEPT14 septin 14 2.2355
SNORA22 small nucleolar RNA, H/ACA box 22 2.23078
HPVC1 human papillomavirus (type 18) E5 central sequence-like 1 2.22793
VSTM2A V-set and transmembrane domain containing 2A 2.22633
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2.22123
SEC61G Sec61 gamma subunit 2.21727
LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 2.21727
EGFR-AS1 EGFR antisense RNA 1 2.21096
EGFR epidermal growth factor receptor 2.20309
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
TARP TCR gamma alternate reading frame protein 2.13648
TRGC2 T cell receptor gamma constant 2 2.12565
TRGV3 T cell receptor gamma variable 3 2.11167
LINC00265 long intergenic non-protein coding RNA 265 2.09073
C7ORF65 chromosome 7 open reading frame 65 2.08712
LINC00525 long intergenic non-protein coding RNA 525 2.08712
C7ORF69 chromosome 7 open reading frame 69 2.08712
C7ORF57 chromosome 7 open reading frame 57 2.08334
TNS3 tensin 3 2.08334
PKD1L1 polycystic kidney disease 1 like 1 2.08334
UPP1 uridine phosphorylase 1 2.08334
SUN3 Sad1 and UNC84 domain containing 3 2.08334
HUS1 HUS1 checkpoint homolog (S. pombe) 2.08334
SNORA9 small nucleolar RNA, H/ACA box 9 2.07851
ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 2.07776
ZNF479 zinc finger protein 479 2.0731

low copy number

Symbol Name Standardized Value
PWRN2 Prader-Willi region non-protein coding RNA 2 -3.03592
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA16 interferon, alpha 16 -2.76453
IFNA17 interferon, alpha 17 -2.76453
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466