CAL-72 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human osteosarcoma cell line, established from a chemotherapy-resistant tumor sample obtained from the left knee of a 10-year-old boy with anaplastic osteoblastic sarcoma (Rosen grade IIB) in 1989. (BRENDA Tissue and Enzyme Source Ontology, BTO_0002089)
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Genes

525 genes with high or low copy number in CAL-72 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MYOF myoferlin 4.51153
C17ORF102 chromosome 17 open reading frame 102 4.51153
GOLGA6L7P golgin A6 family-like 7, pseudogene 4.51153
RPP14 ribonuclease P/MRP 14kDa subunit 4.51153
C9ORF91 chromosome 9 open reading frame 91 4.51153
ABHD6 abhydrolase domain containing 6 4.51153
DNASE1L3 deoxyribonuclease I-like 3 4.51153
TMEM132E transmembrane protein 132E 4.51153
LOC100289656 Dexi homolog (mouse) pseudogene 4.51153
NDNL2 necdin-like 2 4.51153
TJP1 tight junction protein 1 4.51153
MYO1D myosin ID 4.51153
CEP55 centrosomal protein 55kDa 4.51153
FAM189A1 family with sequence similarity 189, member A1 4.51153
PXK PX domain containing serine/threonine kinase 4.51153
HIATL2 hippocampus abundant transcript-like 2 3.12177
HABP4 hyaluronan binding protein 4 3.12177
XPA xeroderma pigmentosum, complementation group A 3.12177
LOC286359 uncharacterized LOC286359 3.12177
AAED1 AhpC/TSA antioxidant enzyme domain containing 1 3.12177
ZNF782 zinc finger protein 782 3.12177
SLC35D2 solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 3.12177
LOC441454 prothymosin, alpha pseudogene 3.12177
LOC441455 makorin ring finger protein 1 pseudogene 3.12177
HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 3.12177
CCDC180 coiled-coil domain containing 180 3.12177
LOC100499484-C9ORF174 LOC100499484-C9orf174 readthrough 3.12177
ZNF367 zinc finger protein 367 3.12177
TDRD7 tudor domain containing 7 3.12177
FFAR4 free fatty acid receptor 4 3.12177
CDC14B cell division cycle 14B 3.12177
VAV3-AS1 VAV3 antisense RNA 1 3.12177
HECTD2 HECT domain containing E3 ubiquitin protein ligase 2 3.12177
FLNB filamin B, beta 3.12177
NCBP1 nuclear cap binding protein subunit 1, 80kDa 3.12177
NUTM2G NUT family member 2G 3.12177
RBP4 retinol binding protein 4, plasma 3.12177
SNORA70C small nucleolar RNA, H/ACA box 70C 3.12177
UMPS uridine monophosphate synthetase 3.12177
LOC100132781 cyclin Y-like 1 pseudogene 3.12177
ZNF510 zinc finger protein 510 3.12177
TRIM32 tripartite motif containing 32 3.12177
TMOD1 tropomodulin 1 3.12177
LOC100499484 SUGT1-1300002K09Rik pseudogene 3.12177
TSTD2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 3.12177
C9ORF156 chromosome 9 open reading frame 156 2.93899
KALRN kalirin, RhoGEF kinase 2.93899
AKR7A2P1 aldo-keto reductase family 7, member A2 pseudogene 1 2.93899
NBPF4 neuroblastoma breakpoint family, member 4 2.93899
MUC13 mucin 13, cell surface associated 2.93899
FOXE1 forkhead box E1 2.93899
FEZF2 FEZ family zinc finger 2 2.93899
LINC00474 long intergenic non-protein coding RNA 474 2.93899
TLR4 toll-like receptor 4 2.93899
NBPF6 neuroblastoma breakpoint family, member 6 2.93899
HENMT1 HEN1 methyltransferase homolog 1 (Arabidopsis) 2.93899
C3ORF14 chromosome 3 open reading frame 14 2.93899
FAM102B family with sequence similarity 102, member B 2.93899
PRPF38B pre-mRNA processing factor 38B 2.93899
HEMGN hemogen 2.93899
STXBP3 syntaxin binding protein 3 2.93899
ITGB5 integrin, beta 5 2.93899
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1 2.93899
CADPS Ca++-dependent secretion activator 2.93899
FCGR1B Fc fragment of IgG, high affinity Ib, receptor (CD64) 2.76305
MIR4256 microRNA 4256 2.76305
CTTNBP2NL CTTNBP2 N-terminal like 2.76305
FAM19A3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 2.76305
HEG1 heart development protein with EGF-like domains 1 2.76305
APOB apolipoprotein B 2.76305
ZNF322 zinc finger protein 322 2.76305
SRGAP2D SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) 2.76305
SNX4 sorting nexin 4 2.76305
ST7L suppression of tumorigenicity 7 like 2.76305
FNDC7 fibronectin type III domain containing 7 2.76305
LRIG2 leucine-rich repeats and immunoglobulin-like domains 2 2.76305
OLFM3 olfactomedin 3 2.76305
RUMY2 RUMY family member 2 2.76305
PPM1J protein phosphatase, Mg2+/Mn2+ dependent, 1J 2.76305
RHOB ras homolog family member B 2.76305
SMC6 structural maintenance of chromosomes 6 2.76305
LDAH lipid droplet associated hydrolase 2.76305
SLC12A8 solute carrier family 12, member 8 2.76305
WNT2B wingless-type MMTV integration site family, member 2B 2.76305
MSGN1 mesogenin 1 2.76305
GEN1 GEN1 Holliday junction 5' flap endonuclease 2.76305
RHOC ras homolog family member C 2.76305
MIR5092 microRNA 5092 2.76305
PAPPA pregnancy-associated plasma protein A, pappalysin 1 2.76305
DNAJA1P5 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 2.76305
LOC643441 uncharacterized LOC643441 2.76305
ZNF148 zinc finger protein 148 2.76305
HIST2H2BA histone cluster 2, H2ba (pseudogene) 2.76305
MCOLN3 mucolipin 3 2.64759
ZNF326 zinc finger protein 326 2.64759
RAD51AP2 RAD51 associated protein 2 2.64759
TIMP4 TIMP metallopeptidase inhibitor 4 2.64759
SYN2 synapsin II 2.64759
CD2 CD2 molecule 2.64759
MIR4423 microRNA 4423 2.64759
C1ORF52 chromosome 1 open reading frame 52 2.64759
MIR548I1 microRNA 548i-1 2.64759
ZNHIT6 zinc finger, HIT-type containing 6 2.64759
IFI44L interferon-induced protein 44-like 2.64759
MIR320B1 microRNA 320b-1 2.64759
IFI44 interferon-induced protein 44 2.64759
ALG1L ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2.64759
GDF7 growth differentiation factor 7 2.64759
CYR61 cysteine-rich, angiogenic inducer, 61 2.64759
ADGRL4 adhesion G protein-coupled receptor L4 2.64759
LOC100129138 THAP domain containing, apoptosis associated protein 3 pseudogene 2.64759
VAV3 vav 3 guanine nucleotide exchange factor 2.64759
BCL10 B-cell CLL/lymphoma 10 2.64759
ZNF697 zinc finger protein 697 2.64759
DDAH1 dimethylarginine dimethylaminohydrolase 1 2.64759
LOC646626 uncharacterized LOC646626 2.64759
CD101 CD101 molecule 2.64759
VSNL1 visinin-like 1 2.64759
LINC00954 long intergenic non-protein coding RNA 954 2.64759
FAM86JP family with sequence similarity 86, member A pseudogene 2.64759
ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 2.64759
TTC32 tetratricopeptide repeat domain 32 2.64759
WDR63 WD repeat domain 63 2.64759
OSBPL11 oxysterol binding protein-like 11 2.64759
ROPN1B rhophilin associated tail protein 1B 2.64759
TRIM45 tripartite motif containing 45 2.59653
NOTCH2 notch 2 2.59653
CLCA1 chloride channel accessory 1 2.59653
SEP15 15 kDa selenoprotein 2.59653
SDC1 syndecan 1 2.59653
LMO4 LIM domain only 4 2.59653
GBP1 guanylate binding protein 1, interferon-inducible 2.59653
SYT6 synaptotagmin VI 2.59653
EPHX4 epoxide hydrolase 4 2.59653
MIR942 microRNA 942 2.59653
VTCN1 V-set domain containing T cell activation inhibitor 1 2.59653
GBP6 guanylate binding protein family, member 6 2.59653
PUM2 pumilio RNA-binding family member 2 2.59653
NTNG1 netrin G1 2.59653
RNPC3 RNA-binding region (RNP1, RRM) containing 3 2.59653
GEMIN8P4 gem (nuclear organelle) associated protein 8 pseudogene 4 2.59653
ADGRL2 adhesion G protein-coupled receptor L2 2.59653
NHLH2 nescient helix loop helix 2 2.59653
SASS6 spindle assembly 6 homolog (C. elegans) 2.59653
TTF2 transcription termination factor, RNA polymerase II 2.59653
C1ORF146 chromosome 1 open reading frame 146 2.59653
MIR548AP microRNA 548ap 2.59653
GFI1 growth factor independent 1 transcription repressor 2.59653
CCBL2 cysteine conjugate-beta lyase 2 2.59653
CLCA2 chloride channel accessory 2 2.59653
MCOLN2 mucolipin 2 2.59653
MIR548D1 microRNA 548d-1 2.59653
GBP3 guanylate binding protein 3 2.59653
CLCA4 chloride channel accessory 4 2.59653
FRRS1 ferric-chelate reductase 1 2.59653
CASQ2 calsequestrin 2 (cardiac muscle) 2.59653
COL24A1 collagen, type XXIV, alpha 1 2.59653
ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 2.59653
GLMN glomulin, FKBP associated protein 2.59653
LPAR3 lysophosphatidic acid receptor 3 2.59653
RPAP2 RNA polymerase II associated protein 2 2.59653
RTCA RNA 3'-terminal phosphate cyclase 2.59653
GDAP2 ganglioside induced differentiation associated protein 2 2.59653
SLC22A15 solute carrier family 22, member 15 2.59653
ADAM30 ADAM metallopeptidase domain 30 2.59653
LAPTM4A lysosomal protein transmembrane 4 alpha 2.59653
SPAG17 sperm associated antigen 17 2.59653
PTGFRN prostaglandin F2 receptor inhibitor 2.59653
MAN1A2 mannosidase, alpha, class 1A, member 2 2.59653
ACTG1P4 actin gamma 1 pseudogene 4 2.59653
VANGL1 VANGL planar cell polarity protein 1 2.59653
ODF2L outer dense fiber of sperm tails 2-like 2.59653
AMY2B amylase, alpha 2B (pancreatic) 2.59653
REG4 regenerating islet-derived family, member 4 2.59653
S1PR1 sphingosine-1-phosphate receptor 1 2.59653
WDR3 WD repeat domain 3 2.59653
KIAA1107 KIAA1107 2.59653
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 2.59653
CLCA3P chloride channel accessory 3, pseudogene 2.59653
LRRC39 leucine rich repeat containing 39 2.59653
MIR553 microRNA 553 2.59653
LRRC8C leucine rich repeat containing 8 family, member C 2.59653
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 2.59653
WDR35 WD repeat domain 35 2.59653
SH3GLB1 SH3-domain GRB2-like endophilin B1 2.59653
RBMXL1 RNA binding motif protein, X-linked-like 1 2.59653
GTF2B general transcription factor IIB 2.59653
BRDT bromodomain, testis-specific 2.59653
PPARG peroxisome proliferator-activated receptor gamma 2.59653
NGF nerve growth factor (beta polypeptide) 2.59653
TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae) 2.59653
NBPF7 neuroblastoma breakpoint family, member 7 2.59653
PRMT6 protein arginine methyltransferase 6 2.59653
F3 coagulation factor III (thromboplastin, tissue factor) 2.59653
MATN3 matrilin 3 2.59653
HS1BP3 HCLS1 binding protein 3 2.59653
SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) 2.59653
MIR548AA1 microRNA 548aa-1 2.59653
GBP1P1 guanylate binding protein 1, interferon-inducible pseudogene 1 2.59653
HIAT1 hippocampus abundant transcript 1 2.59653
BTBD8 BTB (POZ) domain containing 8 2.59653
SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 2.59653
FLJ27354 uncharacterized LOC400761 2.59653
LRRC8B leucine rich repeat containing 8 family, member B 2.59653
LRRC8D leucine rich repeat containing 8 family, member D 2.59653
PALMD palmdelphin 2.59653
SLC44A3 solute carrier family 44, member 3 2.49065
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 2.49065
LOC729987 uncharacterized LOC729987 2.49065
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 2.49065
EVI5 ecotropic viral integration site 5 2.49065
GBP5 guanylate binding protein 5 2.49065
GPR88 G protein-coupled receptor 88 2.49065
TMEM56 transmembrane protein 56 2.49065
RPF1 ribosome production factor 1 homolog (S. cerevisiae) 2.49065
SAMD13 sterile alpha motif domain containing 13 2.49065
GBP4 guanylate binding protein 4 2.49065
GBP7 guanylate binding protein 7 2.49065
DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 2.49065
TSPAN2 tetraspanin 2 2.49065
GCLM glutamate-cysteine ligase, modifier subunit 2.49065
MIR2682 microRNA 2682 2.49065
SLC30A7 solute carrier family 30 (zinc transporter), member 7 2.49065
CNN3 calponin 3, acidic 2.49065
LOC729970 hCG2028352-like 2.49065
TRIM33 tripartite motif containing 33 2.49065
MIR760 microRNA 760 2.49065
LOC729930 chromosome 11 open reading frame 74 pseudogene 2.49065
LINC01555 long intergenic non-protein coding RNA 1555 2.49065
RWDD3 RWD domain containing 3 2.49065
TGFBR3 transforming growth factor, beta receptor III 2.49065
SNX7 sorting nexin 7 2.49065
SNORD21 small nucleolar RNA, C/D box 21 2.49065
DNASE2B deoxyribonuclease II beta 2.49065
TTLL7 tubulin tyrosine ligase-like family member 7 2.49065
TSHB thyroid stimulating hormone, beta 2.49065
GBP2 guanylate binding protein 2, interferon-inducible 2.49065
PKN2 protein kinase N2 2.49065
LOC100129620 uncharacterized LOC100129620 2.49065
CDC7 cell division cycle 7 2.49065
LPPR5 lipid phosphate phosphatase-related protein type 5 2.49065
CTBS chitobiase, di-N-acetyl- 2.49065
FAM69A family with sequence similarity 69, member A 2.49065
TBX15 T-box 15 2.49065
VCAM1 vascular cell adhesion molecule 1 2.49065
MAB21L3 mab-21-like 3 (C. elegans) 2.49065
DBT dihydrolipoamide branched chain transacylase E2 2.49065
EXTL2 exostosin-like glycosyltransferase 2 2.49065
RPL5 ribosomal protein L5 2.49065
HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) 2.49065
TMEM56-RWDD3 TMEM56-RWDD3 readthrough 2.49065
PHGDH phosphoglycerate dehydrogenase 2.49065
MIR137 microRNA 137 2.49065
WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2.49065
CDC14A cell division cycle 14A 2.49065
ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2.49065
SNORA66 small nucleolar RNA, H/ACA box 66 2.49065
FLJ31662 uncharacterized LOC440594 2.49065
GNG5 guanine nucleotide binding protein (G protein), gamma 5 2.49065
UOX urate oxidase, pseudogene 2.49065
SPATA1 spermatogenesis associated 1 2.49065
SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 2.49065
DPH5 diphthamide biosynthesis 5 2.49065
COL11A1 collagen, type XI, alpha 1 2.49065
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 2.44392
CSDE1 cold shock domain containing E1, RNA-binding 2.44392
SIKE1 suppressor of IKBKE 1 2.44392
BARHL2 BarH-like homeobox 2 2.44392
LOC100131564 uncharacterized LOC100131564 2.44392
BCAS2 breast carcinoma amplified sequence 2 2.44392
CCDC18 coiled-coil domain containing 18 2.44392
PTBP2 polypyrimidine tract binding protein 2 2.44392
ARHGAP29 Rho GTPase activating protein 29 2.44392
RSBN1 round spermatid basic protein 1 2.44392
BCAR3 breast cancer anti-estrogen resistance 3 2.44392
SYCP1 synaptonemal complex protein 1 2.44392
LOC100129046 uncharacterized LOC100129046 2.44392
OLFML3 olfactomedin-like 3 2.44392
LPPR4 lipid phosphate phosphatase-related protein type 4 2.44392
AP4B1 adaptor-related protein complex 4, beta 1 subunit 2.44392
TMED5 transmembrane emp24 protein transport domain containing 5 2.44392
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2.44392
DCLRE1B DNA cross-link repair 1B 2.44392
DENND2C DENN/MADD domain containing 2C 2.44392
PHTF1 putative homeodomain transcription factor 1 2.44392
HIPK1 homeodomain interacting protein kinase 1 2.44392
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 2.44392
BCL2L15 BCL2-like 15 2.44392
AP4B1-AS1 AP4B1 antisense RNA 1 2.44392
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 2.44392
MTF2 metal response element binding transcription factor 2 2.44392
FNBP1L formin binding protein 1-like 2.44392
ZNF644 zinc finger protein 644 2.44392
MIG7 mig-7 2.44392
AMPD1 adenosine monophosphate deaminase 1 2.44392
DPYD-AS1 DPYD antisense RNA 1 2.41451
RNU6-31P RNA, U6 small nuclear 31, pseudogene 2.39327
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2.35236
SNX13 sorting nexin 13 2.35236
HDAC9 histone deacetylase 9 2.35236
AHR aryl hydrocarbon receptor 2.30944
ISPD isoprenoid synthase domain containing 2.26395
TSPAN13 tetraspanin 13 2.26395
AGR2 anterior gradient 2 2.26395
AGR3 anterior gradient 3 2.26395
SOSTDC1 sclerostin domain containing 1 2.25904
LRRC72 leucine rich repeat containing 72 2.25904
AGMO alkylglycerol monooxygenase 2.25904
ANKMY2 ankyrin repeat and MYND domain containing 2 2.25904
MEOX2 mesenchyme homeobox 2 2.25904
NBAS neuroblastoma amplified sequence 2.24139
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 2.2355
ANGPT1 angiopoietin 1 2.22917
COL22A1 collagen, type XXII, alpha 1 2.22917
MIR30D microRNA 30d 2.22633
MIR30B microRNA 30b 2.22633
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) 2.22558
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
RAD21 RAD21 homolog (S. pombe) 2.22558
MIR3610 microRNA 3610 2.22558
RAD21-AS1 RAD21 antisense RNA 1 2.22558
ZFAT zinc finger and AT hook domain containing 2.22291
EIF3H eukaryotic translation initiation factor 3, subunit H 2.22291
AARD alanine and arginine rich domain containing protein 2.22291
LINC00536 long intergenic non-protein coding RNA 536 2.21727
MED30 mediator complex subunit 30 2.21258
SLC30A8 solute carrier family 30 (zinc transporter), member 8 2.21258
COLEC10 collectin sub-family member 10 (C-type lectin) 2.21096
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 2.21096
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 2.21096
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
DSCC1 DNA replication and sister chromatid cohesion 1 2.20309
NOV nephroblastoma overexpressed 2.20309
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa 2.20309
SAMD12-AS1 SAMD12 antisense RNA 1 2.20309
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 2.20309
ASAP1-IT1 ASAP1 intronic transcript 1 2.20053
EXT1 exostosin glycosyltransferase 1 2.20053
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 2.19863
ADCY8 adenylate cyclase 8 (brain) 2.19301
SAMD12 sterile alpha motif domain containing 12 2.18778
ZHX2 zinc fingers and homeoboxes 2 2.18778
DEPTOR DEP domain containing MTOR-interacting protein 2.18124
MYCNOS MYCN opposite strand 2.18124
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 2.18124
RNF139 ring finger protein 139 2.17694
MTBP MDM2 binding protein 2.16947
HAS2-AS1 HAS2 antisense RNA 1 2.16947
HAS2 hyaluronan synthase 2 2.16947
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 2.16947
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 2.16947
TMEM65 transmembrane protein 65 2.16816
TATDN1 TatD DNase domain containing 1 2.16816
MTSS1 metastasis suppressor 1 2.16816
ANXA13 annexin A13 2.16816
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 2.16816
MRPL13 mitochondrial ribosomal protein L13 2.16625
FER1L6-AS1 FER1L6 antisense RNA 1 2.16625
FAM91A1 family with sequence similarity 91, member A1 2.16625
COL14A1 collagen, type XIV, alpha 1 2.16625
ZNF572 zinc finger protein 572 2.16564
SNORA31 small nucleolar RNA, H/ACA box 31 2.16564
FER1L6 fer-1-like family member 6 2.16459
SQLE squalene epoxidase 2.16459
KIAA0196 KIAA0196 2.16459
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
FAM84B family with sequence similarity 84, member B 2.15847
TMEM98 transmembrane protein 98 2.15316
TNC tenascin C 2.15316
TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 2.15316
LOC100505478 uncharacterized LOC100505478 2.15316
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 2.15316
CCL8 chemokine (C-C motif) ligand 8 2.15316
CCL7 chemokine (C-C motif) ligand 7 2.15316
CCL1 chemokine (C-C motif) ligand 1 2.15316
CCL2 chemokine (C-C motif) ligand 2 2.15316
TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 2.15316
SPACA3 sperm acrosome associated 3 2.15316
CCL11 chemokine (C-C motif) ligand 11 2.15316
ASIC2 acid sensing (proton gated) ion channel 2 2.15316
CCL13 chemokine (C-C motif) ligand 13 2.15316
CNTN4 contactin 4 2.14588
CNTN6 contactin 6 2.14508
CNTN4-AS2 CNTN4 antisense RNA 2 2.14311
UBXN8 UBX domain protein 8 2.14311
GSR glutathione reductase 2.14311
MIR3117 microRNA 3117 2.14116
GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa 2.14116
SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 2.14116
CTH cystathionine gamma-lyase 2.14116
LEPROTL1 leptin receptor overlapping transcript-like 1 2.14116
DCTN6 dynactin 6 2.14116
AA06 uncharacterized LOC100506677 2.14116
CHL1 cell adhesion molecule L1-like 2.14116
MIR548O2 microRNA 548o-2 2.14116
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime 2.14116
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 2.14116
MBOAT4 membrane bound O-acyltransferase domain containing 4 2.14116
LOC158434 uncharacterized LOC158434 2.14116
SMIM18 small integral membrane protein 18 2.14116
DEC1 deleted in esophageal cancer 1 2.14116
LOC158435 uncharacterized LOC158435 2.14116
INSL5 insulin-like 5 2.14116
TCTEX1D1 Tctex1 domain containing 1 2.14116
NEGR1-IT1 NEGR1 intronic transcript 1 2.13646
NEGR1 neuronal growth regulator 1 2.13622
LRRIQ3 leucine-rich repeats and IQ motif containing 3 2.1316
FPGT-TNNI3K FPGT-TNNI3K readthrough 2.1316
PTPRG protein tyrosine phosphatase, receptor type, G 2.1316
FPGT fucose-1-phosphate guanylyltransferase 2.1316
MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 2.12931
WLS wntless Wnt ligand secretion mediator 2.12931
CRYZ crystallin, zeta (quinone reductase) 2.12931
PTGER3 prostaglandin E receptor 3 (subtype EP3) 2.12931
TNNI3K TNNI3 interacting kinase 2.12931
GBE1 glucan (1,4-alpha-), branching enzyme 1 2.12931
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 2.12931
SERBP1 SERPINE1 mRNA binding protein 1 2.12703
RPE65 retinal pigment epithelium-specific protein 65kDa 2.12703
ZRANB2-AS1 ZRANB2 antisense RNA 1 2.12703
DIRAS3 DIRAS family, GTP-binding RAS-like 3 2.12703
GADD45A growth arrest and DNA-damage-inducible, alpha 2.12703
WDR78 WD repeat domain 78 2.12703
GNG12 guanine nucleotide binding protein (G protein), gamma 12 2.12703
GNG12-AS1 GNG12 antisense RNA 1 2.12703
MIR1262 microRNA 1262 2.12703
MAGI1-AS1 MAGI1 antisense RNA 1 2.12703
ZNF385D zinc finger protein 385D 2.12703
MIR186 microRNA 186 2.12703
MIER1 mesoderm induction early response 1, transcriptional regulator 2.12703
IL12RB2 interleukin 12 receptor, beta 2 2.12703
C1ORF141 chromosome 1 open reading frame 141 2.12703
PTPRG-AS1 PTPRG antisense RNA 1 2.12703
ZRANB2 zinc finger, RAN-binding domain containing 2 2.12703
IL23R interleukin 23 receptor 2.12703
DEPDC1 DEP domain containing 1 2.12703
RBPMS RNA binding protein with multiple splicing 2.12703
SLC35D1 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 2.12703
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2.12225
SLC44A5 solute carrier family 44, member 5 2.12225
SRSF11 serine/arginine-rich splicing factor 11 2.12225
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 2.12225
ASTN2 astrotactin 2 2.12225
LRRC7 leucine rich repeat containing 7 2.12225
ZRANB2-AS2 ZRANB2 antisense RNA 2 (head to head) 2.12225
SNORD45A small nucleolar RNA, C/D box 45A 2.12225
RABGGTB Rab geranylgeranyltransferase, beta subunit 2.12225
LHX8 LIM homeobox 8 2.12225
MSH4 mutS homolog 4 2.12225
MOV10 Mov10 RISC complex RNA helicase 2.12225
LRRC40 leucine rich repeat containing 40 2.12225
SNORD45C small nucleolar RNA, C/D box 45C 2.12225
LOC645949 uncharacterized LOC645949 2.12225
HHLA3 HERV-H LTR-associating 3 2.12225
SNORD45B small nucleolar RNA, C/D box 45B 2.12225
ASB17 ankyrin repeat and SOCS box containing 17 2.12225
PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 2.12225
ANKRD13C ankyrin repeat domain 13C 2.12225
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 2.12225
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 2.11344
EMBP1 embigin pseudogene 1 2.11167
MGC27382 uncharacterized MGC27382 2.10992
FUBP1 far upstream element (FUSE) binding protein 1 2.10992
GIPC2 GIPC PDZ domain containing family, member 2 2.10992
KCNS3 potassium voltage-gated channel, modifier subfamily S, member 3 2.10992
CD58 CD58 molecule 2.10992
PTGFR prostaglandin F receptor (FP) 2.10992
FAM73A family with sequence similarity 73, member A 2.10992
NEXN nexilin (F actin binding protein) 2.10992
IGSF3 immunoglobulin superfamily, member 3 2.10992
DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 2.10992
AMY1A amylase, alpha 1A (salivary) 2.10617
AMY2A amylase, alpha 2A (pancreatic) 2.10617
STX19 syntaxin 19 2.10038
FAM46C family with sequence similarity 46, member C 2.10038
AK5 adenylate kinase 5 2.10038
USP33 ubiquitin specific peptidase 33 2.10038
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 2.10038
ARL13B ADP-ribosylation factor-like 13B 2.10038
ZZZ3 zinc finger, ZZ-type containing 3 2.10038
PROS1 protein S (alpha) 2.10038
NSUN3 NOP2/Sun domain family, member 3 2.10038
DHFRL1 dihydrofolate reductase-like 1 2.10038
PIGK phosphatidylinositol glycan anchor biosynthesis, class K 2.10038
PRKACB protein kinase, cAMP-dependent, catalytic, beta 2.09431
MIR137HG MIR137 host gene 2.09431
DPYD dihydropyrimidine dehydrogenase 2.08781
EFCAB1 EF-hand calcium binding domain 1 2.08712
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
C8ORF22 chromosome 8 open reading frame 22 2.08021
SNAI2 snail family zinc finger 2 2.07776
MIR1206 microRNA 1206 2.07612
MIR1207 microRNA 1207 2.07136
MIR1205 microRNA 1205 2.07136
MIR1208 microRNA 1208 2.07136
FAM49A family with sequence similarity 49, member A 2.06989
BZW2 basic leucine zipper and W2 domains 2 2.06473
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
MIR2053 microRNA 2053 2.05778
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
CSMD3 CUB and Sushi multiple domains 3 2.05477
TRPS1 trichorhinophalangeal syndrome I 2.05422
SNORA40 small nucleolar RNA, H/ACA box 40 2.05129
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
TSC1 tuberous sclerosis 1 -5.12655
C9ORF9 chromosome 9 open reading frame 9 -5.12655
USP17L4 ubiquitin specific peptidase 17-like family member 4 -3.61078
FAM66B family with sequence similarity 66, member B -3.61078
TUSC7 tumor suppressor candidate 7 (non-protein coding) -3.48261
LOC100288911 uncharacterized LOC100288911 -3.29865
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -3.29865
PCDH15 protocadherin-related 15 -3.15179
FUT2 fucosyltransferase 2 (secretor status included) -3.14331
ESPNP espin pseudogene -2.9644
LSAMP limbic system-associated membrane protein -2.91612
ZNF705G zinc finger protein 705G -2.86003
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776