CAL-78 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Similar Terms
Downloads & Tools

Genes

48 genes with high or low copy number in CAL-78 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
FLRT2 fibronectin leucine rich transmembrane protein 2 2.49065
LINC00911 long intergenic non-protein coding RNA 911 2.49065
GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 2.09628
FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 2.09628
RSPH14 radial spoke head 14 homolog (Chlamydomonas) 2.09628
RAB36 RAB36, member RAS oncogene family 2.09529
LOC283585 uncharacterized LOC283585 2.09073
BCR breakpoint cluster region 2.0722

low copy number

Symbol Name Standardized Value
CBLN1 cerebellin 1 precursor -5.12655
C16ORF78 chromosome 16 open reading frame 78 -5.12655
MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase -5.12655
SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 -5.12655
ZNF423 zinc finger protein 423 -3.83684
ST13P4 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 -3.2703
CHD9 chromodomain helicase DNA binding protein 9 -3.14331
RBL2 retinoblastoma-like 2 -3.14331
LOC643802 u3 small nucleolar ribonucleoprotein protein MPP10-like -3.14331
AKTIP AKT interacting protein -3.14331
MIR3613 microRNA 3613 -3.12964
MIR16-1 microRNA 16-1 -3.12964
KCNRG potassium channel regulator -3.12964
CTAGE10P CTAGE family, member 10, pseudogene -3.12964
TRIM13 tripartite motif containing 13 -3.12964
SPRYD7 SPRY domain containing 7 -3.12964
LINC00919 long intergenic non-protein coding RNA 919 -3.11641
TOX3 TOX high mobility group box family member 3 -3.11641
C16ORF97 chromosome 16 open reading frame 97 -3.11641
ITM2B integral membrane protein 2B -3.11641
KPNA3 karyopherin alpha 3 (importin alpha 4) -3.05881
EBPL emopamil binding protein-like -3.05881
ARL11 ADP-ribosylation factor-like 11 -3.05881
DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) -3.05881
PHF11 PHD finger protein 11 -3.05196
SETDB2 SET domain, bifurcated 2 -3.05196
MLNR motilin receptor -3.05196
RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 -3.05196
CDADC1 cytidine and dCMP deaminase domain containing 1 -3.03082
FNDC3A fibronectin type III domain containing 3A -3.03082
CAB39L calcium binding protein 39-like -3.03082
DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) -3.00044
LINC00462 long intergenic non-protein coding RNA 462 -2.99615
CYSLTR2 cysteinyl leukotriene receptor 2 -2.9644
LINC00441 long intergenic non-protein coding RNA 441 -2.91268
NSFP1 N-ethylmaleimide-sensitive factor pseudogene 1 -2.89637
RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 -2.87269
LPAR6 lysophosphatidic acid receptor 6 -2.85279
ARL17A ADP-ribosylation factor-like 17A -2.84936
RB1 retinoblastoma 1 -2.83092