CAL29 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from urinary_tract (Cancer Cell Line Encyclopedia)
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Genes

681 genes with high or low copy number in CAL29 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CDK2AP2 cyclin-dependent kinase 2 associated protein 2 3.1473
CABP2 calcium binding protein 2 3.14674
RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 3.14651
TMEM134 transmembrane protein 134 3.14651
GPR152 G protein-coupled receptor 152 3.14651
CORO1B coronin, actin binding protein, 1B 3.14651
PTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein 3.14651
CABP4 calcium binding protein 4 3.14651
CARNS1 carnosine synthase 1 3.14594
AIP aryl hydrocarbon receptor interacting protein 3.14392
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 3.14392
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 3.14309
TBC1D10C TBC1 domain family, member 10C 3.14023
ALDH3B2 aldehyde dehydrogenase 3 family, member B2 2.67155
TBX10 T-box 10 2.67138
GSTP1 glutathione S-transferase pi 1 2.67138
ACY3 aminoacylase 3 2.67134
NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 2.67104
DOC2GP double C2-like domains, gamma, pseudogene 2.67104
NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 2.67104
LOC100130987 uncharacterized LOC100130987 2.64456
KDM2A lysine (K)-specific demethylase 2A 2.64335
ADRBK1 adrenergic, beta, receptor kinase 1 2.64335
ANKRD13D ankyrin repeat domain 13 family, member D 2.64317
POLD4 polymerase (DNA-directed), delta 4, accessory subunit 2.64267
SSH3 slingshot protein phosphatase 3 2.64235
CLCF1 cardiotrophin-like cytokine factor 1 2.64216
SYT12 synaptotagmin XII 2.64197
RAD9A RAD9 homolog A (S. pombe) 2.64197
C11ORF86 chromosome 11 open reading frame 86 2.64191
RHOD ras homolog family member D 2.64108
PC pyruvate carboxylase 2.37689
FAM185A family with sequence similarity 185, member A 2.1159
RELN reelin 2.11561
FBXL13 F-box and leucine-rich repeat protein 13 2.11512
LRRC17 leucine rich repeat containing 17 2.11502
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2 2.11499
SLC26A5 solute carrier family 26 (anion exchanger), member 5 2.11497
PMPCB peptidase (mitochondrial processing) beta 2.11497
PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 2.11494
RPL19P12 ribosomal protein L19 pseudogene 12 2.11491
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2.11491
ARMC10 armadillo repeat containing 10 2.11487
DPY19L2P2 DPY19L2 pseudogene 2 2.11315
POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3 2.07592
CUX1 cut-like homeobox 1 2.0704
ALKBH4 alkB, alkylation repair homolog 4 (E. coli) 2.07025
MIR5090 microRNA 5090 2.07025
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 2.07025
MIR4467 microRNA 4467 2.07025
LRWD1 leucine-rich repeats and WD repeat domain containing 1 2.07025
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 2.07003
ORAI2 ORAI calcium release-activated calcium modulator 2 2.07
LOC100630923 LOC100289561-PRKRIP1 readthrough 2.06995
SPDYE6 speedy/RINGO cell cycle regulator family member E6 2.06988
MIR4285 microRNA 4285 2.06974
LOC100289561 uncharacterized LOC100289561 2.06974
SH2B2 SH2B adaptor protein 2 2.0696
SPDYE2B speedy/RINGO cell cycle regulator family member E2B 2.06416
SPDYE2 speedy/RINGO cell cycle regulator family member E2 2.06416
RASA4 RAS p21 protein activator 4 2.06404
MYL10 myosin, light chain 10, regulatory 1.98655
TRIM56 tripartite motif containing 56 1.98292
MUC12 mucin 12, cell surface associated 1.98292
MUC17 mucin 17, cell surface associated 1.98291
MIR4653 microRNA 4653 1.98277
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 1.98277
VGF VGF nerve growth factor inducible 1.98277
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 1.98277
NAT16 N-acetyltransferase 16 (GCN5-related, putative) 1.98277
MOGAT3 monoacylglycerol O-acyltransferase 3 1.9827
FAM157A family with sequence similarity 157, member A 1.98181
IFT22 intraflagellar transport 22 1.98057
ZNHIT1 zinc finger, HIT-type containing 1 1.98005
PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 1.98005
FIS1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) 1.98005
CLDN15 claudin 15 1.98005
TLDC2 TBC/LysM-associated domain containing 2 1.96605
SAMHD1 SAM domain and HD domain 1 1.965
AGFG2 ArfGAP with FG repeats 2 1.91447
ACHE acetylcholinesterase (Yt blood group) 1.91433
FBXO24 F-box protein 24 1.9143
PCOLCE-AS1 PCOLCE antisense RNA 1 1.9143
PTCD1 pentatricopeptide repeat domain 1 1.9143
SAP25 Sin3A-associated protein, 25kDa 1.9143
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 1.9143
BUD31 BUD31 homolog (S. cerevisiae) 1.9143
MIR93 microRNA 93 1.91429
MIR25 microRNA 25 1.91429
ZNF789 zinc finger protein 789 1.91429
MIR106B microRNA 106b 1.91429
MCM7 minichromosome maintenance complex component 7 1.91429
TRIP6 thyroid hormone receptor interactor 6 1.91427
SLC12A9 solute carrier family 12, member 9 1.91427
SRRT serrate, RNA effector molecule 1.91427
UFSP1 UFM1-specific peptidase 1 (non-functional) 1.91427
EPHB4 EPH receptor B4 1.91427
ZBED8L ZBED8 like 1.91423
ZNF394 zinc finger protein 394 1.91423
ZKSCAN5 zinc finger with KRAB and SCAN domains 5 1.91423
CPSF4 cleavage and polyadenylation specific factor 4, 30kDa 1.91422
ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough 1.91422
ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 1.91421
AP4M1 adaptor-related protein complex 4, mu 1 subunit 1.91421
MOSPD3 motile sperm domain containing 3 1.9142
PCOLCE procollagen C-endopeptidase enhancer 1.9142
TFR2 transferrin receptor 2 1.9142
ACTL6B actin-like 6B 1.9142
PMS2P1 postmeiotic segregation increased 2 pseudogene 1 1.91417
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 1.91417
SPDYE3 speedy/RINGO cell cycle regulator family member E3 1.91417
CNPY4 canopy FGF signaling regulator 4 1.91416
CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43 1.91416
C7ORF61 chromosome 7 open reading frame 61 1.91416
MBLAC1 metallo-beta-lactamase domain containing 1 1.91416
CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough 1.91416
GAL3ST4 galactose-3-O-sulfotransferase 4 1.91416
MIR5692C2 microRNA 5692c-2 1.91416
TSC22D4 TSC22 domain family, member 4 1.91416
ZCWPW1 zinc finger, CW type with PWWP domain 1 1.91416
STAG3 stromal antigen 3 1.91416
MEPCE methylphosphate capping enzyme 1.91416
MIR4658 microRNA 4658 1.91416
ZNF655 zinc finger protein 655 1.91416
C7ORF43 chromosome 7 open reading frame 43 1.91416
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 1.91416
LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 1.91416
GATS GATS, stromal antigen 3 opposite strand 1.91416
PPP1R35 protein phosphatase 1, regulatory subunit 35 1.91416
NYAP1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 1.91416
COPS6 COP9 signalosome subunit 6 1.91415
TRIM4 tripartite motif containing 4 1.91414
GJC3 gap junction protein, gamma 3, 30.2kDa 1.91414
AZGP1P1 alpha-2-glycoprotein 1, zinc-binding pseudogene 1 1.91414
OR2AE1 olfactory receptor, family 2, subfamily AE, member 1 1.91414
AZGP1 alpha-2-glycoprotein 1, zinc-binding 1.91414
PILRB paired immunoglobin-like type 2 receptor beta 1.91411
CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7 1.91411
PILRA paired immunoglobin-like type 2 receptor alpha 1.91411
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 1.91411
GIGYF1 GRB10 interacting GYF protein 1 1.9141
ZSCAN25 zinc finger and SCAN domain containing 25 1.9141
PVRIG poliovirus receptor related immunoglobulin domain containing 1.9141
GS1-259H13.2 transmembrane protein 225-like 1.9141
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 1.9141
POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) 1.9141
ZSCAN21 zinc finger and SCAN domain containing 21 1.91409
ZNF3 zinc finger protein 3 1.91409
GPC2 glypican 2 1.91409
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 1.91409
WFDC8 WAP four-disulfide core domain 8 1.90692
MROH8 maestro heat-like repeat family member 8 1.90399
EPPIN-WFDC6 EPPIN-WFDC6 readthrough 1.9034
SPINT3 serine peptidase inhibitor, Kunitz type, 3 1.9034
EPPIN epididymal peptidase inhibitor 1.9034
WFDC6 WAP four-disulfide core domain 6 1.9034
WFDC9 WAP four-disulfide core domain 9 1.89844
WFDC11 WAP four-disulfide core domain 11 1.89844
WFDC10A WAP four-disulfide core domain 10A 1.89844
ZSWIM1 zinc finger, SWIM-type containing 1 1.89833
SPATA25 spermatogenesis associated 25 1.89833
NEURL2 neuralized E3 ubiquitin protein ligase 2 1.89833
WFDC3 WAP four-disulfide core domain 3 1.89769
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 1.89748
UBE2C ubiquitin-conjugating enzyme E2C 1.89728
ZSWIM3 zinc finger, SWIM-type containing 3 1.89702
WFDC13 WAP four-disulfide core domain 13 1.89673
WFDC10B WAP four-disulfide core domain 10B 1.89673
PCIF1 PDX1 C-terminal inhibiting factor 1 1.89652
CTSA cathepsin A 1.89652
PLTP phospholipid transfer protein 1.89652
ACOT8 acyl-CoA thioesterase 8 1.89651
TNNC2 troponin C type 2 (fast) 1.89648
SNX21 sorting nexin family member 21 1.89611
DTX2P1-UPK3BP1-PMS2P11 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene 1.89507
WFDC2 WAP four-disulfide core domain 2 1.88233
TECPR1 tectonin beta-propeller repeat containing 1 1.86819
BRI3 brain protein I3 1.86809
PDAP1 PDGFA associated protein 1 1.8556
ZAN zonadhesin (gene/pseudogene) 1.85178
SRC SRC proto-oncogene, non-receptor tyrosine kinase 1.84367
ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa 1.84134
ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 1.84133
MYH16 myosin, heavy chain 16 pseudogene 1.84086
LOC339568 uncharacterized LOC339568 1.83951
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 1.83815
MMP9 matrix metallopeptidase 9 1.83683
EPO erythropoietin 1.83607
CD40 CD40 molecule, TNF receptor superfamily member 5 1.83556
SACK1D scaffolding CK1 anchoring protein D 1.8349
PPP1R16B protein phosphatase 1, regulatory subunit 16B 1.83242
SYS1-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) 1.83084
DBNDD2 dysbindin (dystrobrevin binding protein 1) domain containing 2 1.83013
SYS1 Sys1 golgi trafficking protein 1.82989
TP53TG5 TP53 target 5 1.82989
PIGT phosphatidylinositol glycan anchor biosynthesis, class T 1.82892
SPINT4 serine peptidase inhibitor, Kunitz type 4 1.82792
DSN1 DSN1, MIS12 kinetochore complex component 1.82128
MAPRE1 microtubule-associated protein, RP/EB family, member 1 1.81739
NPTX2 neuronal pentraxin II 1.81654
TMEM130 transmembrane protein 130 1.81555
MIR3609 microRNA 3609 1.81555
RBL1 retinoblastoma-like 1 1.81502
DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35 1.815
BAIAP2L1 BAI1-associated protein 2-like 1 1.81425
SOGA1 suppressor of glucose, autophagy associated 1 1.80798
PMS2P9 postmeiotic segregation increased 2 pseudogene 9 1.80626
EBF2 early B-cell factor 2 1.80593
C20ORF24 chromosome 20 open reading frame 24 1.80402
KPNA7 karyopherin alpha 7 (importin alpha 8) 1.80386
SLA2 Src-like-adaptor 2 1.80347
TGIF2-C20ORF24 TGIF2-C20orf24 readthrough 1.80347
TGIF2 TGFB-induced factor homeobox 2 1.80347
MYL9 myosin, light chain 9, regulatory 1.80339
NDRG3 NDRG family member 3 1.80087
ACTR5 ARP5 actin-related protein 5 homolog (yeast) 1.8007
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 1.8007
BPIFA2 BPI fold containing family A, member 2 1.79862
MATN4 matrilin 4 1.79835
RBPJL recombination signal binding protein for immunoglobulin kappa J region-like 1.79807
SDC4 syndecan 4 1.798
LOC100287792 uncharacterized LOC100287792 1.79759
BPIFB6 BPI fold containing family B, member 6 1.79461
BPIFB2 BPI fold containing family B, member 2 1.79461
RPN2 ribophorin II 1.79396
MIR3664 microRNA 3664 1.79389
GHRH growth hormone releasing hormone 1.79379
MANBAL mannosidase, beta A, lysosomal-like 1.79379
BPIFB3 BPI fold containing family B, member 3 1.79286
BPIFB4 BPI fold containing family B, member 4 1.79223
LINC00489 long intergenic non-protein coding RNA 489 1.7901
NNAT neuronatin 1.788
BLCAP bladder cancer associated protein 1.788
ZNF335 zinc finger protein 335 1.78735
SLC35C2 solute carrier family 35 (GDP-fucose transporter), member C2 1.77785
CDH22 cadherin 22, type 2 1.77776
OCSTAMP osteoclast stimulatory transmembrane protein 1.77681
MKRN7P makorin ring finger protein 7, pseudogene 1.77681
ZNF334 zinc finger protein 334 1.77681
ELMO2 engulfment and cell motility 2 1.77681
ZNF663P zinc finger protein 663, pseudogene 1.77681
R3HDML R3H domain containing-like 1.76839
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 1.76802
OSER1 oxidative stress responsive serine-rich 1 1.76758
JPH2 junctophilin 2 1.76758
OSER1-AS1 OSER1 antisense RNA 1 (head to head) 1.76758
SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 1.76527
SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 1.76492
TP53RK TP53 regulating kinase 1.76492
BPIFA3 BPI fold containing family A, member 3 1.76068
BPIFA1 BPI fold containing family A, member 1 1.76058
BPIFA4P BPI fold containing family A, member 4, pseudogene 1.75991
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 1.75761
ARHGAP40 Rho GTPase activating protein 40 1.75625
VSTM2L V-set and transmembrane domain containing 2 like 1.75496
ADIG adipogenin 1.7547
SLC12A5 solute carrier family 12 (potassium/chloride transporter), member 5 1.75051
TOMM34 translocase of outer mitochondrial membrane 34 1.74658
STK4-AS1 STK4 antisense RNA 1 (head to head) 1.74658
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 1.74641
PABPC1L poly(A) binding protein, cytoplasmic 1-like 1.74641
TTI1 TELO2 interacting protein 1 1.74509
KIAA1755 KIAA1755 1.74372
RIMS4 regulating synaptic membrane exocytosis 4 1.74336
KCNK15 potassium channel, two pore domain subfamily K, member 15 1.74318
WISP2 WNT1 inducible signaling pathway protein 2 1.74276
SLPI secretory leukocyte peptidase inhibitor 1.74269
BPI bactericidal/permeability-increasing protein 1.74136
BPIFB1 BPI fold containing family B, member 1 1.74107
RPRD1B regulation of nuclear pre-mRNA domain containing 1B 1.74095
CTNNBL1 catenin, beta like 1 1.73917
LBP lipopolysaccharide binding protein 1.73841
TGM2 transglutaminase 2 1.73773
ADA adenosine deaminase 1.73302
PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 1.73266
MIR3646 microRNA 3646 1.73181
COL26A1 collagen, type XXVI, alpha 1 1.7269
TTPAL tocopherol (alpha) transfer protein-like 1.7267
GDAP1L1 ganglioside induced differentiation associated protein 1-like 1 1.7266
FITM2 fat storage-inducing transmembrane protein 2 1.72613
SERINC3 serine incorporator 3 1.72613
HNF4A hepatocyte nuclear factor 4, alpha 1.72572
LPIN3 lipin 3 1.72337
EMILIN3 elastin microfibril interfacer 3 1.72337
PLCG1 phospholipase C, gamma 1 1.72283
LINC01260 long intergenic non-protein coding RNA 1260 1.72147
TRRAP transformation/transcription domain-associated protein 1.7205
COMMD7 COMM domain containing 7 1.71795
WFDC5 WAP four-disulfide core domain 5 1.71433
KCNS1 potassium voltage-gated channel, modifier subfamily S, member 1 1.71433
STK4 serine/threonine kinase 4 1.71416
SUN5 Sad1 and UNC84 domain containing 5 1.70949
NCOA5 nuclear receptor coactivator 5 1.70808
WFDC12 WAP four-disulfide core domain 12 1.70691
L3MBTL1 l(3)mbt-like 1 (Drosophila) 1.70667
SGK2 serum/glucocorticoid regulated kinase 2 1.70661
PI3 peptidase inhibitor 3, skin-derived 1.70626
IFT52 intraflagellar transport 52 1.70604
SEMG2 semenogelin II 1.70591
SEMG1 semenogelin I 1.70574
GTSF1L gametocyte specific factor 1-like 1.70515
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2 1.70495
SRSF6 serine/arginine-rich splicing factor 6 1.70494
LOC149950 uncharacterized LOC149950 1.7038
C20ORF203 chromosome 20 open reading frame 203 1.70366
CDK5RAP1 CDK5 regulatory subunit associated protein 1 1.69972
SNORA71C small nucleolar RNA, H/ACA box 71C 1.69275
SNORA71E small nucleolar RNA, H/ACA box 71E 1.69275
SNORA71A small nucleolar RNA, H/ACA box 71A 1.69275
SNORA71D small nucleolar RNA, H/ACA box 71D 1.69275
SNORA71B small nucleolar RNA, H/ACA box 71B 1.69275
SNORA60 small nucleolar RNA, H/ACA box 60 1.69275
SNHG11 small nucleolar RNA host gene 11 1.69275
SNHG17 small nucleolar RNA host gene 17 1.69275
AAR2 AAR2 splicing factor homolog (S. cerevisiae) 1.69165
SHANK2-AS1 SHANK2 antisense RNA 1 1.68903
SNTA1 syntrophin, alpha 1 1.68789
MIR4755 microRNA 4755 1.68744
ZNF341 zinc finger protein 341 1.68554
TSPY26P testis specific protein, Y-linked 26, pseudogene 1.68437
PLAGL2 pleiomorphic adenoma gene-like 2 1.68437
POFUT1 protein O-fucosyltransferase 1 1.68379
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 1.68335
TOP1 topoisomerase (DNA) I 1.68047
HNRNPCL1 heterogeneous nuclear ribonucleoprotein C-like 1 1.67865
LOC649330 1.67865
ACTL10 actin-like 10 1.67843
C20ORF144 chromosome 20 open reading frame 144 1.67843
E2F1 E2F transcription factor 1 1.67843
NECAB3 N-terminal EF-hand calcium binding protein 3 1.67843
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 1.67754
LHFPL3-AS1 LHFPL3 antisense RNA 1 1.67224
KMT2E-AS1 KMT2E antisense RNA 1 (head to head) 1.67201
SRPK2 SRSF protein kinase 2 1.67078
RALY RALY heterogeneous nuclear ribonucleoprotein 1.66828
ROMO1 reactive oxygen species modulator 1 1.66605
CHMP4B charged multivesicular body protein 4B 1.66517
KIF3B kinesin family member 3B 1.66408
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) 1.66101
CHD6 chromodomain helicase DNA binding protein 6 1.66021
EPB41L1 erythrocyte membrane protein band 4.1-like 1 1.65978
LINC00657 long intergenic non-protein coding RNA 657 1.65904
SCAND1 SCAN domain containing 1 1.65137
NOL4L nucleolar protein 4-like 1.64299
ASXL1 additional sex combs like transcriptional regulator 1 1.64249
SPAG4 sperm associated antigen 4 1.63845
CPNE1 copine I 1.6378
RBM12 RNA binding motif protein 12 1.63762
LINC01004 long intergenic non-protein coding RNA 1004 1.6365
LHFPL3-AS2 LHFPL3 antisense RNA 2 1.63466
CNBD2 cyclic nucleotide binding domain containing 2 1.63343
TOX2 TOX high mobility group box family member 2 1.63292
KMT2E lysine (K)-specific methyltransferase 2E 1.6324
MIR3616 microRNA 3616 1.62978
HCK HCK proto-oncogene, Src family tyrosine kinase 1.62545
TM9SF4 transmembrane 9 superfamily protein member 4 1.62545
DLGAP4 discs, large (Drosophila) homolog-associated protein 4 1.62467
CCM2L cerebral cavernous malformation 2-like 1.62396
FER1L4 fer-1-like family member 4, pseudogene (functional) 1.62126
ERGIC3 ERGIC and golgi 3 1.61896
NFS1 NFS1 cysteine desulfurase 1.60858
RBM39 RNA binding motif protein 39 1.6021
DEFB115 defensin, beta 115 1.60139
PXMP4 peroxisomal membrane protein 4, 24kDa 1.60096
DEFB116 defensin, beta 116 1.6009
ORC5 origin recognition complex, subunit 5 1.59108
XKR7 XK, Kell blood group complex subunit-related family, member 7 1.59103
SACK1C scaffolding CK1 anchoring protein C 1.58573
EIF6 eukaryotic translation initiation factor 6 1.58573
MMP24 matrix metallopeptidase 24 (membrane-inserted) 1.58563
ZHX3 zinc fingers and homeoboxes 3 1.58243
DEFB122 defensin, beta 122 (pseudogene) 1.57689
DEFB121 defensin, beta 121 1.57677
DEFB123 defensin, beta 123 1.57677
DEFB124 defensin, beta 124 1.57524
LINC00028 long intergenic non-protein coding RNA 28 1.57452
REM1 RAS (RAD and GEM)-like GTP-binding 1 1.57452
GDF5 growth differentiation factor 5 1.57289
UQCC1 ubiquinol-cytochrome c reductase complex assembly factor 1 1.57262
DEFB119 defensin, beta 119 1.5714
DEFB118 defensin, beta 118 1.5714
CEP250 centrosomal protein 250kDa 1.57044
PDRG1 p53 and DNA-damage regulated 1 1.56468
PRAMEF2 PRAME family member 2 1.56463
PTPRD protein tyrosine phosphatase, receptor type, D 1.56439
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 1.56097
MIR644A microRNA 644a 1.56019
DYNLRB1 dynein, light chain, roadblock-type 1 1.56012
PROCR protein C receptor, endothelial 1.5597
EDEM2 ER degradation enhancer, mannosidase alpha-like 2 1.55966
PUS7 pseudouridylate synthase 7 (putative) 1.5595
C20ORF173 chromosome 20 open reading frame 173 1.55256
TP53INP2 tumor protein p53 inducible nuclear protein 2 1.55041
HMGB3P1 high mobility group box 3 pseudogene 1 1.55038
MCTS2P malignant T cell amplified sequence 2, pseudogene 1.55015
HM13-AS1 HM13 antisense RNA 1 1.54831
MIR548O2 microRNA 548o-2 1.5482
HM13 histocompatibility (minor) 13 1.54762
ACSS2 acyl-CoA synthetase short-chain family member 2 1.54323
MIR499B microRNA 499b 1.5427
MYH7B myosin, heavy chain 7B, cardiac muscle, beta 1.5427
MIR499A microRNA 499a 1.5427
GSS glutathione synthetase 1.54222
MIR3193 microRNA 3193 1.53836
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 1.53836
SHANK2 SH3 and multiple ankyrin repeat domains 2 1.53804
LINC00266-1 long intergenic non-protein coding RNA 266-1 1.5363
TTLL9 tubulin tyrosine ligase-like family member 9 1.5358
ASIP agouti signaling protein 1.53228
NCOA6 nuclear receptor coactivator 6 1.53025
PHF20 PHD finger protein 20 1.52854
DUSP15 dual specificity phosphatase 15 1.52621
FOXS1 forkhead box S1 1.52451
MYLK2 myosin light chain kinase 2 1.52426
PIGU phosphatidylinositol glycan anchor biosynthesis, class U 1.52255
AHCY adenosylhomocysteinase 1.50837
TPX2 TPX2, microtubule-associated 1.50661
COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) 1.50614
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 1.50309
ITCH itchy E3 ubiquitin protein ligase 1.50223
GGT7 gamma-glutamyltransferase 7 1.50142
BCL2L1 BCL2-like 1 1.4977
LOC100131496 uncharacterized LOC100131496 1.48975
LOC81691 exonuclease NEF-sp 1.48259
LINC00494 long intergenic non-protein coding RNA 494 1.46619
NTSR1 neurotensin receptor 1 (high affinity) 1.45756
CTTN cortactin 1.45384
LINC01056 long intergenic non-protein coding RNA 1056 1.45357
LINC00029 long intergenic non-protein coding RNA 29 1.45357
CSE1L CSE1 chromosome segregation 1-like (yeast) 1.45066
LINC00659 long intergenic non-protein coding RNA 659 1.44351
OGFR opioid growth factor receptor 1.44186
MRGBP MRG/MORF4L binding protein 1.44186
COL9A3 collagen, type IX, alpha 3 1.44166
TCFL5 transcription factor-like 5 (basic helix-loop-helix) 1.44166
DPH3P1 diphthamide biosynthesis 3 pseudogene 1 1.44166
DIDO1 death inducer-obliterator 1 1.44155
BHLHE23 basic helix-loop-helix family, member e23 1.44144
PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 1.44134
GID8 GID complex subunit 8 1.44129
SLC17A9 solute carrier family 17 (vesicular nucleotide transporter), member 9 1.44093
ZFAS1 ZNFX1 antisense RNA 1 1.44081
SNORD12C small nucleolar RNA, C/D box 12C 1.44081
SNORD12B small nucleolar RNA, C/D box 12B 1.44081
SNORD12 small nucleolar RNA, C/D box 12 1.44081
DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 1.44059
ZNFX1 zinc finger, NFX1-type containing 1 1.44055
STAU1 staufen double-stranded RNA binding protein 1 1.44036
HELZ2 helicase with zinc finger 2, transcriptional coactivator 1.43966
HAR1B highly accelerated region 1B (non-protein coding) 1.4367
HAR1A highly accelerated region 1A (non-protein coding) 1.43624
EYA2 EYA transcriptional coactivator and phosphatase 2 1.43519
ZMYND8 zinc finger, MYND-type containing 8 1.43464
FADD Fas (TNFRSF6)-associated via death domain 1.43273
MIR548K microRNA 548k 1.43233
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 1.43225
MIR124-3 microRNA 124-3 1.43106
SOX18 SRY (sex determining region Y)-box 18 1.42848
LINC00176 long intergenic non-protein coding RNA 176 1.42843
RGS19 regulator of G-protein signaling 19 1.42698
LKAAEAR1 LKAAEAR motif containing 1 1.42698
NPBWR2 neuropeptides B/W receptor 2 1.42689
PPDPF pancreatic progenitor cell differentiation and proliferation factor 1.4267
ZNF512B zinc finger protein 512B 1.42652
PRPF6 pre-mRNA processing factor 6 1.42652
SAMD10 sterile alpha motif domain containing 10 1.42652
UCKL1-AS1 UCKL1 antisense RNA 1 1.42652
NCOA3 nuclear receptor coactivator 3 1.4264
TCEA2 transcription elongation factor A (SII), 2 1.42207
PTK6 protein tyrosine kinase 6 1.42136
SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 1.42136
C20ORF195 chromosome 20 open reading frame 195 1.42136
MIR4326 microRNA 4326 1.42048
ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 1.42048
PREX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 1.42043
MYT1 myelin transcription factor 1 1.41926
FLJ16779 uncharacterized LOC100192386 1.41912
EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1.41893
LOC63930 uncharacterized LOC63930 1.4189
YTHDF1 YTH N(6)-methyladenosine RNA binding protein 1 1.41861
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 1.4154
ANO1 anoctamin 1, calcium activated chloride channel 1.41531
GMEB2 glucocorticoid modulatory element binding protein 2 1.41421
MIR3196 microRNA 3196 1.4131
NKAIN4 Na+/K+ transporting ATPase interacting 4 1.4131
BIRC7 baculoviral IAP repeat containing 7 1.4131
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 1.40985
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 1.40966
LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 1.40961
MTG2 mitochondrial ribosome-associated GTPase 2 1.40959
ABHD16B abhydrolase domain containing 16B 1.40935
TPD52L2 tumor protein D52-like 2 1.40935
MIR1914 microRNA 1914 1.40888
UCKL1 uridine-cytidine kinase 1-like 1 1.40888
MIR647 microRNA 647 1.40888
SLCO4A1-AS1 SLCO4A1 antisense RNA 1 1.40782
SLCO4A1 solute carrier organic anion transporter family, member 4A1 1.40782
MIR941-1 microRNA 941-1 1.40711
MIR941-3 microRNA 941-3 1.40711
MIR941-2 microRNA 941-2 1.40711
MIR941-4 microRNA 941-4 1.40711
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 1.40681
ZGPAT zinc finger, CCCH-type with G patch domain 1.40493
COL20A1 collagen, type XX, alpha 1 1.40351
MIR1257 microRNA 1257 1.40266
MIR133A2 microRNA 133a-2 1.39974
MIR1-1HG MIR1-1 host gene 1.39969
C20ORF166-AS1 C20orf166 antisense RNA 1 1.39958
MIR1-1 microRNA 1-1 1.39958
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1 1.39858
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 1.39419
TMEM189 transmembrane protein 189 1.39176
TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 1.39176
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 1.38709
HRH3 histamine receptor H3 1.38592
PTGIS prostaglandin I2 (prostacyclin) synthase 1.38582
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2 1.38523
ARFRP1 ADP-ribosylation factor related protein 1 1.38463
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy 1.38449
SULF2 sulfatase 2 1.38445
RTEL1-TNFRSF6B RTEL1-TNFRSF6B readthrough (NMD candidate) 1.3828
RTEL1 regulator of telomere elongation helicase 1 1.3828
STMN3 stathmin-like 3 1.38279
SPATA2 spermatogenesis associated 2 1.37726
TRERNA1 translation regulatory long non-coding RNA 1 1.37495
BCAS4 breast carcinoma amplified sequence 4 1.37364
ADNP activity-dependent neuroprotector homeobox 1.37313
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 1.37303
KCNG1 potassium channel, voltage gated modifier subfamily G, member 1 1.37293
MOCS3 molybdenum cofactor synthesis 3 1.37262
RNF114 ring finger protein 114 1.37253
SLC2A4RG SLC2A4 regulator 1.37159
LIME1 Lck interacting transmembrane adaptor 1 1.37159
MIR4758 microRNA 4758 1.36892
FGF4 fibroblast growth factor 4 1.36757
FGF3 fibroblast growth factor 3 1.36555
RBBP8NL RBBP8 N-terminal like 1.36269
RPS21 ribosomal protein S21 1.36011
CABLES2 Cdk5 and Abl enzyme substrate 2 1.36011
SLC9A8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 1.35804
SNAI1 snail family zinc finger 1 1.35356
MIR645 microRNA 645 1.35143
OSBPL2 oxysterol binding protein-like 2 1.34829
ZBTB46 zinc finger and BTB domain containing 46 1.3473
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 1.34649
GATA5 GATA binding protein 5 1.34501
ADRM1 adhesion regulating molecule 1 1.33931
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 1.33821
LAMA5 laminin, alpha 5 1.33741
PARD6B par-6 family cell polarity regulator beta 1.3356
FAM65C family with sequence similarity 65, member C 1.33392
C20ORF197 chromosome 20 open reading frame 197 1.32772

low copy number

Symbol Name Standardized Value
C7ORF66 chromosome 7 open reading frame 66 -3.21049
DOCK4 dedicator of cytokinesis 4 -3.21049
LOC100507537 uncharacterized LOC100507537 -3.21049
EOGT EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase -2.8347
LINC00701 long intergenic non-protein coding RNA 701 -2.68595
MME membrane metallo-endopeptidase -2.39961
TOR4A torsin family 4, member A -2.3514
ZNF608 zinc finger protein 608 -2.3514
COTL1 coactosin-like F-actin binding protein 1 -2.3514
ANK2 ankyrin 2, neuronal -2.33808
ANKRD20A1 ankyrin repeat domain 20 family, member A1 -2.31497
CLCC1 chloride channel CLIC-like 1 -2.20312
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene -2.20023
NELL1 NEL-like 1 (chicken) -2.00401
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 -1.70853
DPH6-AS1 DPH6 antisense RNA 1 (head to head) -1.65585
GLDC glycine dehydrogenase (decarboxylating) -1.64751
LY6D lymphocyte antigen 6 complex, locus D -1.62882
LYNX1 Ly6/neurotoxin 1 -1.61009
MTVR2 mouse mammary tumor virus receptor homolog 2 -1.56649
MIR3614 microRNA 3614 -1.56646
COIL coilin -1.5638
SCPEP1 serine carboxypeptidase 1 -1.56184
MIR454 microRNA 454 -1.56082
SKA2 spindle and kinetochore associated complex subunit 2 -1.56078
DGKE diacylglycerol kinase, epsilon 64kDa -1.53812
TRIM25 tripartite motif containing 25 -1.53796
NOG noggin -1.53795
RNF126P1 ring finger protein 126 pseudogene 1 -1.53642
AKAP1 A kinase (PRKA) anchor protein 1 -1.53614
MTMR4 myotubularin related protein 4 -1.53351
C17ORF47 chromosome 17 open reading frame 47 -1.5335
PPM1E protein phosphatase, Mg2+/Mn2+ dependent, 1E -1.53252
C17ORF67 chromosome 17 open reading frame 67 -1.52839
SEPT4 septin 4 -1.50678
RAD51C RAD51 paralog C -1.50621
CUEDC1 CUE domain containing 1 -1.50033
LOC440040 glutamate receptor, metabotropic 5 pseudogene -1.49227
LGALS12 lectin, galactoside-binding, soluble, 12 -1.4795
RARRES3 retinoic acid receptor responder (tazarotene induced) 3 -1.4795
HRASLS2 HRAS-like suppressor 2 -1.47948
C11ORF84 chromosome 11 open reading frame 84 -1.47835
C11ORF95 chromosome 11 open reading frame 95 -1.47834
RTN3 reticulon 3 -1.47817
SLC25A18 solute carrier family 25 (glutamate carrier), member 18 -1.47729
MSX2P1 msh homeobox 2 pseudogene 1 -1.47719
OR4D1 olfactory receptor, family 4, subfamily D, member 1 -1.47719
MIR4736 microRNA 4736 -1.47713
MIR142 microRNA 142 -1.47713
MEN1 multiple endocrine neoplasia I -1.47526
MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 -1.47526
SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 -1.4743
SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12 -1.47424
RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) -1.47422
NRXN2 neurexin 2 -1.47409
DYNLL2 dynein, light chain, LC8-type 2 -1.47367
VEZF1 vascular endothelial zinc finger 1 -1.47364
SRSF1 serine/arginine-rich splicing factor 1 -1.47364
UBE2Q2L ubiquitin-conjugating enzyme E2Q family member 2-like -1.47197
MCF2L MCF.2 cell line derived transforming sequence-like -1.46374
TEX14 testis expressed 14 -1.45688
TRIM37 tripartite motif containing 37 -1.45608
BZRAP1-AS1 BZRAP1 antisense RNA 1 -1.45581
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) -1.45581
ATL3 atlastin GTPase 3 -1.45416
MARK2 MAP/microtubule affinity-regulating kinase 2 -1.45411
RCOR2 REST corepressor 2 -1.45411
OR4D2 olfactory receptor, family 4, subfamily D, member 2 -1.45341
MRPS23 mitochondrial ribosomal protein S23 -1.45246
SF1 splicing factor 1 -1.45153
PYGM phosphorylase, glycogen, muscle -1.45056
RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 -1.43942
MIR1237 microRNA 1237 -1.43942
HSF5 heat shock transcription factor family member 5 -1.4349
BAD BCL2-associated agonist of cell death -1.43173
GPR137 G protein-coupled receptor 137 -1.43173
PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B -1.43172
ESRRA estrogen-related receptor alpha -1.43172
PRDX5 peroxiredoxin 5 -1.43172
CCDC88B coiled-coil domain containing 88B -1.43172
TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) -1.43172
TEX40 testis expressed 40 -1.43172
KCNK4 potassium channel, two pore domain subfamily K, member 4 -1.43172
LPO lactoperoxidase -1.43118
EPX eosinophil peroxidase -1.43105
MKS1 Meckel syndrome, type 1 -1.43105
TMLHE trimethyllysine hydroxylase, epsilon -1.4258
RNF43 ring finger protein 43 -1.41303
PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific) -1.41075
FKBP2 FK506 binding protein 2, 13kDa -1.41066
MPO myeloperoxidase -1.41022
BZRAP1 benzodiazepine receptor (peripheral) associated protein 1 -1.41001
NAA40 N(alpha)-acetyltransferase 40, NatD catalytic subunit -1.40519
MAPK10 mitogen-activated protein kinase 10 -1.40511
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) -1.40496
FLRT1 fibronectin leucine rich transmembrane protein 1 -1.39061
TRPT1 tRNA phosphotransferase 1 -1.39052
NUDT22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 -1.39052
VEGFB vascular endothelial growth factor B -1.39052
DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4 -1.39052
CD300LG CD300 molecule-like family member g -1.37535
DUSP3 dual specificity phosphatase 3 -1.37471
SOST sclerostin -1.37471
C17ORF105 chromosome 17 open reading frame 105 -1.37423
FLJ42102 uncharacterized LOC399923 -1.35708
DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 -1.35683
ETV4 ets variant 4 -1.35683
MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) -1.35661
MEOX1 mesenchyme homeobox 1 -1.35593
DHCR7 7-dehydrocholesterol reductase -1.35571
PLA2G16 phospholipase A2, group XVI -1.35466
FERMT3 fermitin family member 3 -1.35452
OR4A47 olfactory receptor, family 4, subfamily A, member 47 -1.35278
GOLGA2P7 golgin A2 pseudogene 7 -1.3513
LOC440300 chondroitin sulfate proteoglycan 4 pseudogene -1.35126
FAM86C1 family with sequence similarity 86, member C1 -1.34756
KRTAP5-7 keratin associated protein 5-7 -1.34714
ARHGAP24 Rho GTPase activating protein 24 -1.34277
OR4C12 olfactory receptor, family 4, subfamily C, member 12 -1.3418
OR4C13 olfactory receptor, family 4, subfamily C, member 13 -1.3418
STIP1 stress-induced phosphoprotein 1 -1.33705
MACROD1 MACRO domain containing 1 -1.337
MIR2117 microRNA 2117 -1.33692
KRTAP5-10 keratin associated protein 5-10 -1.3354
KRTAP5-11 keratin associated protein 5-11 -1.3354
KRTAP5-8 keratin associated protein 5-8 -1.3354
KRTAP5-9 keratin associated protein 5-9 -1.3354
NADSYN1 NAD synthetase 1 -1.3353
OR4C3 olfactory receptor, family 4, subfamily C, member 3 -1.3254