CAL29 Gene Set

Dataset CCLE Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
Description cell line derived from urinary_tract (Cancer Cell Line Encyclopedia)
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Genes

301 genes with high or low expression in CAL29 relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
GKN1 gastrokine 1 3.40778
CCNYL1 cyclin Y-like 1 2.88719
BLCAP bladder cancer associated protein 2.76736
KDM2A lysine (K)-specific demethylase 2A 2.65402
KDM6A lysine (K)-specific demethylase 6A 2.59331
GSTP1 glutathione S-transferase pi 1 2.56027
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 2.45927
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 2.38331
KRT80 keratin 80, type II 2.36597
RHOD ras homolog family member D 2.35036
IVL involucrin 2.34652
UPK1B uroplakin 1B 2.31155
USP31 ubiquitin specific peptidase 31 2.29117
TSC22D2 TSC22 domain family, member 2 2.29045
LOC100506431 B2 RNA 2.2527
CDK2AP2 cyclin-dependent kinase 2 associated protein 2 2.22059
RAP2B RAP2B, member of RAS oncogene family 2.21203
ITGB6 integrin, beta 6 2.20815
SYT12 synaptotagmin XII 2.19283
BPGM 2,3-bisphosphoglycerate mutase 2.17938
SKIL SKI-like proto-oncogene 2.17755
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 2.16205
PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 2.14972
IFFO2 intermediate filament family orphan 2 2.14885
ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 2.12058
FOXI1 forkhead box I1 2.04754
CLDN8 claudin 8 2.04752
BUD31 BUD31 homolog (S. cerevisiae) 2.03915
MYO1B myosin IB 2.02916
ACKR3 atypical chemokine receptor 3 2.01951
RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 2.00227
SSH3 slingshot protein phosphatase 3 1.99053
NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 1.98626
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 1.9857
CROT carnitine O-octanoyltransferase 1.97616
CDH23 cadherin-related 23 1.95453
CAST calpastatin 1.95431
TRAFD1 TRAF-type zinc finger domain containing 1 1.94737
PAWR PRKC, apoptosis, WT1, regulator 1.94142
C7ORF61 chromosome 7 open reading frame 61 1.90745
MAPRE1 microtubule-associated protein, RP/EB family, member 1 1.89959
GPR87 G protein-coupled receptor 87 1.85223
GKN2 gastrokine 2 1.84936
EPB41L1 erythrocyte membrane protein band 4.1-like 1 1.8462
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 1.84456
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 1.84208
CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) 1.83985
ZNHIT1 zinc finger, HIT-type containing 1 1.82674
BMP2 bone morphogenetic protein 2 1.80917
DUOXA1 dual oxidase maturation factor 1 1.79854
OLFML2A olfactomedin-like 2A 1.78901
UPK3B uroplakin 3B 1.78397
FBLN1 fibulin 1 1.77737
GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 1.76596
GRHL3 grainyhead-like 3 (Drosophila) 1.75907
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 1.74637
RDX radixin 1.74346
ZNF655 zinc finger protein 655 1.73619
TMPRSS11E transmembrane protease, serine 11E 1.73619
TMEM189 transmembrane protein 189 1.73267
TSPAN2 tetraspanin 2 1.7326
CABP4 calcium binding protein 4 1.72404
TMEM134 transmembrane protein 134 1.7211
KIF23 kinesin family member 23 1.71044
AP4M1 adaptor-related protein complex 4, mu 1 subunit 1.71029
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) 1.70917
ATF3 activating transcription factor 3 1.70352
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 1.70065
DAAM1 dishevelled associated activator of morphogenesis 1 1.69647
SPRR3 small proline-rich protein 3 1.69637
LYPD3 LY6/PLAUR domain containing 3 1.68788
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) 1.68593
SNX31 sorting nexin 31 1.68376
C12ORF54 chromosome 12 open reading frame 54 1.68351
NGB neuroglobin 1.67871
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 1.67332
KRT13 keratin 13, type I 1.65743
UPK1A uroplakin 1A 1.65339
NEDD1 neural precursor cell expressed, developmentally down-regulated 1 1.65319
C6ORF106 chromosome 6 open reading frame 106 1.64745
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 1.63878
RAB21 RAB21, member RAS oncogene family 1.63735
TRAM1 translocation associated membrane protein 1 1.6312
GID8 GID complex subunit 8 1.63002
TMEM40 transmembrane protein 40 1.61105
RHOBTB3 Rho-related BTB domain containing 3 1.60817
RPRD1B regulation of nuclear pre-mRNA domain containing 1B 1.60475
ANKLE2 ankyrin repeat and LEM domain containing 2 1.60457
STRA6 stimulated by retinoic acid 6 1.60214
FILIP1L filamin A interacting protein 1-like 1.59882
GJB4 gap junction protein, beta 4, 30.3kDa 1.59793
UBE2D1 ubiquitin-conjugating enzyme E2D 1 1.59791
SACK1D scaffolding CK1 anchoring protein D 1.59259
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 1.59041
ZSCAN25 zinc finger and SCAN domain containing 25 1.57718
TPX2 TPX2, microtubule-associated 1.57092
NPTN neuroplastin 1.56487
ZGPAT zinc finger, CCCH-type with G patch domain 1.55687
EDN1 endothelin 1 1.54505
GRHL2 grainyhead-like 2 (Drosophila) 1.54339
PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 1.54203
RYK receptor-like tyrosine kinase 1.53866
AIP aryl hydrocarbon receptor interacting protein 1.53043
KIF3B kinesin family member 3B 1.52876
MEST mesoderm specific transcript 1.52685
CLDN4 claudin 4 1.52573
ZSCAN20 zinc finger and SCAN domain containing 20 1.5246
HIATL1 hippocampus abundant transcript-like 1 1.52187
LUZP2 leucine zipper protein 2 1.52166
CORO1B coronin, actin binding protein, 1B 1.51586
ZNF334 zinc finger protein 334 1.51358
C15ORF41 chromosome 15 open reading frame 41 1.51128
EMC4 ER membrane protein complex subunit 4 1.50881
AFAP1L2 actin filament associated protein 1-like 2 1.50378
TMTC3 transmembrane and tetratricopeptide repeat containing 3 1.50207
BAIAP2L1 BAI1-associated protein 2-like 1 1.49768
FOSB FBJ murine osteosarcoma viral oncogene homolog B 1.49693
KRT4 keratin 4, type II 1.49609
NCOA7 nuclear receptor coactivator 7 1.49403
C8ORF48 chromosome 8 open reading frame 48 1.48872
MAST4 microtubule associated serine/threonine kinase family member 4 1.48798
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 1.47778
KRT5 keratin 5, type II 1.47148
NUAK1 NUAK family, SNF1-like kinase, 1 1.47127
FGFR2 fibroblast growth factor receptor 2 1.46303
LYPD5 LY6/PLAUR domain containing 5 1.45953
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 1.45945
CALML3 calmodulin-like 3 1.45144
KCTD11 potassium channel tetramerization domain containing 11 1.45014
ZNF488 zinc finger protein 488 1.44607
MID1 midline 1 1.44533
ARMC10 armadillo repeat containing 10 1.44433
KRT83 keratin 83, type II 1.43995
EPHX3 epoxide hydrolase 3 1.43095
TUSC3 tumor suppressor candidate 3 1.43021
SAMD9 sterile alpha motif domain containing 9 1.42779
ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 1.42601
INPP5A inositol polyphosphate-5-phosphatase, 40kDa 1.42463
SRPK2 SRSF protein kinase 2 1.42251
SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 1.42192
TES testin LIM domain protein 1.42152
KL klotho 1.41924
AAK1 AP2 associated kinase 1 1.41677
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 1.4099
MICALL1 MICAL-like 1 1.40884
ANKRD13D ankyrin repeat domain 13 family, member D 1.40805
ZNF365 zinc finger protein 365 1.40735
RPN1 ribophorin I 1.40575
CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 1.39941
PSG5 pregnancy specific beta-1-glycoprotein 5 1.39866
SACK1C scaffolding CK1 anchoring protein C 1.39638
ITPKC inositol-trisphosphate 3-kinase C 1.38934
KCNMB1 potassium channel subfamily M regulatory beta subunit 1 1.38864
TMED2 transmembrane emp24 domain trafficking protein 2 1.38538
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 1.37923
ZNF789 zinc finger protein 789 1.37476
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 1.37442
SALL4 spalt-like transcription factor 4 1.37364
CLIP1 CAP-GLY domain containing linker protein 1 1.37258
MACC1 metastasis associated in colon cancer 1 1.37099
WNT7B wingless-type MMTV integration site family, member 7B 1.37028
PCBP2 poly(rC) binding protein 2 1.36887
AGFG2 ArfGAP with FG repeats 2 1.36591
CTSH cathepsin H 1.36588
EPHB4 EPH receptor B4 1.36204
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 1.36096
PPP1R12B protein phosphatase 1, regulatory subunit 12B 1.36018
RNF10 ring finger protein 10 1.35924
IQCA1 IQ motif containing with AAA domain 1 1.35441
EDARADD EDAR-associated death domain 1.35356
POLD4 polymerase (DNA-directed), delta 4, accessory subunit 1.35319
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 1.35209
SOGA1 suppressor of glucose, autophagy associated 1 1.3515
LGALS14 lectin, galactoside-binding, soluble, 14 1.34926

low expression

Symbol Name Standardized Value
RABEPK Rab9 effector protein with kelch motifs -3.99721
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 -2.99951
SRRM2 serine/arginine repetitive matrix 2 -2.70022
FGF16 fibroblast growth factor 16 -2.69078
SLC9C2 solute carrier family 9, member C2 (putative) -2.52175
PCDH8 protocadherin 8 -2.50178
COPG2 coatomer protein complex, subunit gamma 2 -2.48904
KCTD6 potassium channel tetramerization domain containing 6 -2.46601
LCORL ligand dependent nuclear receptor corepressor-like -2.44506
ALKBH7 alkB, alkylation repair homolog 7 (E. coli) -2.42219
YBEY ybeY metallopeptidase (putative) -2.3834
FAM167B family with sequence similarity 167, member B -2.35336
PROX1-AS1 PROX1 antisense RNA 1 -2.32342
CTH cystathionine gamma-lyase -2.30869
NKD2 naked cuticle homolog 2 (Drosophila) -2.1636
LOC100506289 uncharacterized LOC100506289 -2.15596
LINC00261 long intergenic non-protein coding RNA 261 -2.11316
IFNK interferon, kappa -2.09506
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) -2.09408
AQP11 aquaporin 11 -2.0885
MEF2D myocyte enhancer factor 2D -2.0575
LOC100507283 uncharacterized LOC100507283 -2.0176
C11ORF54 chromosome 11 open reading frame 54 -2.01149
ALDH9A1 aldehyde dehydrogenase 9 family, member A1 -2.00885
ZNF696 zinc finger protein 696 -1.9859
MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) -1.98187
KCNIP2 Kv channel interacting protein 2 -1.97918
LY6G6D lymphocyte antigen 6 complex, locus G6D -1.97087
C21ORF33 chromosome 21 open reading frame 33 -1.96116
IGIP IgA-inducing protein -1.95433
CBLN4 cerebellin 4 precursor -1.95215
MSTN myostatin -1.91826
LONP1 lon peptidase 1, mitochondrial -1.91159
NUDT6 nudix (nucleoside diphosphate linked moiety X)-type motif 6 -1.89603
ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit -1.87418
NDUFB10 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa -1.87031
S100Z S100 calcium binding protein Z -1.86721
LOC100506258 uncharacterized LOC100506258 -1.8632
ZNF425 zinc finger protein 425 -1.85784
PCDHGC5 protocadherin gamma subfamily C, 5 -1.85553
C3ORF35 chromosome 3 open reading frame 35 -1.8533
SLIT2-IT1 SLIT2 intronic transcript 1 -1.8269
SPATC1L spermatogenesis and centriole associated 1-like -1.82539
OR7D2 olfactory receptor, family 7, subfamily D, member 2 -1.81481
CLCN5 chloride channel, voltage-sensitive 5 -1.81137
FAM216A family with sequence similarity 216, member A -1.79363
KCNJ2-AS1 KCNJ2 antisense RNA 1 (head to head) -1.78876
PDHB pyruvate dehydrogenase (lipoamide) beta -1.78861
LINC00299 long intergenic non-protein coding RNA 299 -1.78428
CCDC153 coiled-coil domain containing 153 -1.77016
AKAP4 A kinase (PRKA) anchor protein 4 -1.76941
VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) -1.7648
C11ORF30 chromosome 11 open reading frame 30 -1.76285
MIR7-3HG MIR7-3 host gene -1.75678
AGTPBP1 ATP/GTP binding protein 1 -1.75418
OR2L13 olfactory receptor, family 2, subfamily L, member 13 -1.74718
LOC100652972 uncharacterized LOC100652972 -1.74581
RAB29 RAB29, member RAS oncogene family -1.7417
DIO1 deiodinase, iodothyronine, type I -1.73713
LOC100507547 uncharacterized LOC100507547 -1.7331
C16ORF95 chromosome 16 open reading frame 95 -1.72786
HPS5 Hermansky-Pudlak syndrome 5 -1.71688
MUC13 mucin 13, cell surface associated -1.71668
RSAD1 radical S-adenosyl methionine domain containing 1 -1.71537
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -1.71464
LOC100132356 uncharacterized LOC100132356 -1.7048
SUGP2 SURP and G patch domain containing 2 -1.70282
COA5 cytochrome c oxidase assembly factor 5 -1.69426
SCML2 sex comb on midleg-like 2 (Drosophila) -1.68472
POLG2 polymerase (DNA directed), gamma 2, accessory subunit -1.6785
RFPL1S RFPL1 antisense RNA 1 -1.67595
RAD23A RAD23 homolog A (S. cerevisiae) -1.67462
ELANE elastase, neutrophil expressed -1.67421
RLN3 relaxin 3 -1.66026
ERG v-ets avian erythroblastosis virus E26 oncogene homolog -1.65768
WDR13 WD repeat domain 13 -1.65547
ZC3H11D zinc finger CCCH-type containing 11D -1.64977
PROK1 prokineticin 1 -1.64341
FREM3 FRAS1 related extracellular matrix 3 -1.64002
SMYD3 SET and MYND domain containing 3 -1.6389
SOX8 SRY (sex determining region Y)-box 8 -1.63819
FAM186B family with sequence similarity 186, member B -1.63114
UBASH3A ubiquitin associated and SH3 domain containing A -1.63001
OCEL1 occludin/ELL domain containing 1 -1.6299
CCDC173 coiled-coil domain containing 173 -1.62407
AJAP1 adherens junctions associated protein 1 -1.62402
ATP8B4 ATPase, class I, type 8B, member 4 -1.60285
CARF calcium responsive transcription factor -1.594
TMEM55A transmembrane protein 55A -1.57216
WDR45 WD repeat domain 45 -1.57148
GREB1 growth regulation by estrogen in breast cancer 1 -1.57145
CCDC130 coiled-coil domain containing 130 -1.56903
MXI1 MAX interactor 1, dimerization protein -1.56579
DHPS deoxyhypusine synthase -1.56415
BICD1 bicaudal D homolog 1 (Drosophila) -1.56345
HSPA12B heat shock 70kD protein 12B -1.56236
ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 -1.56073
C19ORF60 chromosome 19 open reading frame 60 -1.55905
TGDS TDP-glucose 4,6-dehydratase -1.5431
NTHL1 nth endonuclease III-like 1 (E. coli) -1.5391
ARHGEF2 Rho/Rac guanine nucleotide exchange factor (GEF) 2 -1.53606
SNORD114-3 small nucleolar RNA, C/D box 114-3 -1.53446
SH3BP5L SH3-binding domain protein 5-like -1.53151
PLAC8L1 PLAC8-like 1 -1.51563
CABP1 calcium binding protein 1 -1.51382
KIF17 kinesin family member 17 -1.50909
LRRC19 leucine rich repeat containing 19 -1.50365
MAFG v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G -1.49676
MPP6 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) -1.49652
ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 -1.49331
PPOX protoporphyrinogen oxidase -1.49264
ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 -1.49222
CEP68 centrosomal protein 68kDa -1.48661
NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) -1.48644
LOC90834 -1.48106
ACRC acidic repeat containing -1.48066
TTC17 tetratricopeptide repeat domain 17 -1.48028
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) -1.47914
ZNF500 zinc finger protein 500 -1.47811
MAST3 microtubule associated serine/threonine kinase 3 -1.47753
THAP6 THAP domain containing 6 -1.47431
FLJ38379 -1.47176
SMTNL2 smoothelin-like 2 -1.47047
TXLNG taxilin gamma -1.46596
EEF2 eukaryotic translation elongation factor 2 -1.46489
SLC25A27 solute carrier family 25, member 27 -1.45795
CCBL1 cysteine conjugate-beta lyase, cytoplasmic -1.45223