CAL51 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

50 genes with high or low copy number in CAL51 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 2.24544
PARK2 parkin RBR E3 ubiquitin protein ligase 2.16308
SPATS2L spermatogenesis associated, serine-rich 2-like 2.13108
SDHAP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 1.72675
LPA lipoprotein, Lp(a) 1.70451
FGFR1 fibroblast growth factor receptor 1 1.59872
FAM90A1 family with sequence similarity 90, member A1 1.53259
FAM86FP family with sequence similarity 86, member A pseudogene 1.53238
GOLGA8IP golgin A8 family, member I, pseudogene 1.50151
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 1.44527
HACD3 3-hydroxyacyl-CoA dehydratase 3 1.44328
DEFA3 defensin, alpha 3, neutrophil-specific 1.4089
C9ORF62 chromosome 9 open reading frame 62 1.40096
C18ORF61 uncharacterized LOC497259 1.39713
CDRT1 CMT1A duplicated region transcript 1 1.39406
TRIM16 tripartite motif containing 16 1.38051
DEFT1P2 defensin, theta 1 pseudogene 2 1.37581
DEFT1P defensin, theta 1 pseudogene 1.37581

low copy number

Symbol Name Standardized Value
LINC01257 long intergenic non-protein coding RNA 1257 -3.21049
EBF1 early B-cell factor 1 -3.18746
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -2.59447
IL19 interleukin 19 -2.59435
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b -2.46794
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) -2.3514
CERKL ceramide kinase-like -2.3514
GLT1D1 glycosyltransferase 1 domain containing 1 -2.20312
RMST rhabdomyosarcoma 2 associated transcript (non-protein coding) -2.18255
ODF4 outer dense fiber of sperm tails 4 -2.13311
EXOC1 exocyst complex component 1 -2.12113
UNC5D unc-5 homolog D (C. elegans) -2.07412
SPANXD SPANX family, member D -2.00402
NUBPL nucleotide binding protein-like -2.00369
ZMAT4 zinc finger, matrin-type 4 -1.80607
LY6D lymphocyte antigen 6 complex, locus D -1.77807
LYNX1 Ly6/neurotoxin 1 -1.77641
SCN5A sodium channel, voltage gated, type V alpha subunit -1.74184
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -1.74167
PDE1A phosphodiesterase 1A, calmodulin-dependent -1.59503
SNTG2 syntrophin, gamma 2 -1.53098
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -1.51502
PALLD palladin, cytoskeletal associated protein -1.5126
GLIS1 GLIS family zinc finger 1 -1.50888
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -1.48248
CNTN3 contactin 3 (plasmacytoma associated) -1.45142
ANKRD36B ankyrin repeat domain 36B -1.43239
FRMD4A FERM domain containing 4A -1.40515
RYR3 ryanodine receptor 3 -1.4007
SPANXA2-OT1 SPANXA2 overlapping transcript 1 -1.36465
SAMD12-AS1 SAMD12 antisense RNA 1 -1.32674
PRAMEF1 PRAME family member 1 -1.32128