CAL62 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

606 genes with high or low copy number in CAL62 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
C2ORF73 chromosome 2 open reading frame 73 3.2803
HEXB hexosaminidase B (beta polypeptide) 3.17625
ZNF658 zinc finger protein 658 2.49192
LYNX1 Ly6/neurotoxin 1 2.47687
LY6D lymphocyte antigen 6 complex, locus D 2.47671
MCC mutated in colorectal cancers 2.36596
TJP2 tight junction protein 2 2.36377
PROM1 prominin 1 2.24439
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 2.20984
LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 2.17194
SETMAR SET domain and mariner transposase fusion gene 2.06388
MIR4790 microRNA 4790 1.98896
ARL8B ADP-ribosylation factor-like 8B 1.98812
EDEM1 ER degradation enhancer, mannosidase alpha-like 1 1.98798
SUMF1 sulfatase modifying factor 1 1.98148
EGOT eosinophil granule ontogeny transcript (non-protein coding) 1.98055
BHLHE40-AS1 BHLHE40 antisense RNA 1 1.94097
BHLHE40 basic helix-loop-helix family, member e40 1.94094
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 1.90661
UBE2Q2L ubiquitin-conjugating enzyme E2Q family member 2-like 1.86897
LRRN1 leucine rich repeat neuronal 1 1.86623
SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 1.86041
OR4F17 olfactory receptor, family 4, subfamily F, member 17 1.86031
BCAS1 breast carcinoma amplified sequence 1 1.85022
H2BFM H2B histone family, member M 1.84465
AGBL1-AS1 AGBL1 antisense RNA 1 1.82614
EFTUD1P1 elongation factor Tu GTP binding domain containing 1 pseudogene 1 1.81906
LINC00606 long intergenic non-protein coding RNA 606 1.81755
MIR885 microRNA 885 1.81755
SEC13 SEC13 homolog (S. cerevisiae) 1.81749
GHRLOS ghrelin opposite strand/antisense RNA 1.81746
GHRL ghrelin/obestatin prepropeptide 1.81746
LINC00852 long intergenic non-protein coding RNA 852 1.81744
IRAK2 interleukin-1 receptor-associated kinase 2 1.80914
HRH1 histamine receptor H1 1.80756
TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 1.80727
CRBN cereblon 1.80716
IL5RA interleukin 5 receptor, alpha 1.80679
NOTCH1 notch 1 1.80579
CNTN4-AS2 CNTN4 antisense RNA 2 1.80556
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 1.79108
LINC00052 long intergenic non-protein coding RNA 52 1.77848
OR5H6 olfactory receptor, family 5, subfamily H, member 6 (gene/pseudogene) 1.77829
LINC00925 long intergenic non-protein coding RNA 925 1.77541
RHCG Rh family, C glycoprotein 1.77534
LINC00928 long intergenic non-protein coding RNA 928 1.77534
MIR9-3 microRNA 9-3 1.77514
NF1P2 neurofibromin 1 pseudogene 2 1.77512
OR5H1 olfactory receptor, family 5, subfamily H, member 1 1.77507
OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 1.77507
OR5H14 olfactory receptor, family 5, subfamily H, member 14 1.77507
OR5H15 olfactory receptor, family 5, subfamily H, member 15 1.77453
GABRR3 gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene) 1.77422
SLC6A1-AS1 SLC6A1 antisense RNA 1 1.77009
ARL6 ADP-ribosylation factor-like 6 1.76896
TATDN2 TatD DNase domain containing 2 1.76868
BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit 1.76769
LHFPL4 lipoma HMGIC fusion partner-like 4 1.76372
VGLL4 vestigial-like family member 4 1.75989
HDDC3 HD domain containing 3 1.7574
FES FES proto-oncogene, tyrosine kinase 1.75733
MAN2A2 mannosidase, alpha, class 2A, member 2 1.75733
FURIN furin (paired basic amino acid cleaving enzyme) 1.75733
RCCD1 RCC1 domain containing 1 1.75726
UNC45A unc-45 homolog A (C. elegans) 1.75726
PRC1-AS1 PRC1 antisense RNA 1 1.75693
PRC1 protein regulator of cytokinesis 1 1.75687
SV2B synaptic vesicle glycoprotein 2B 1.75654
PEX11A peroxisomal biogenesis factor 11 alpha 1.75631
PLIN1 perilipin 1 1.75625
WDR93 WD repeat domain 93 1.75556
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1 1.75556
MESP2 mesoderm posterior basic helix-loop-helix transcription factor 2 1.75556
MIR5094 microRNA 5094 1.75531
ARPIN actin-related protein 2/3 complex inhibitor 1.75531
ANPEP alanyl (membrane) aminopeptidase 1.75531
VPS33B vacuolar protein sorting 33 homolog B (yeast) 1.75511
AP3S2 adaptor-related protein complex 3, sigma 2 subunit 1.75493
C15ORF38-AP3S2 C15orf38-AP3S2 readthrough 1.75493
TICRR TOPBP1-interacting checkpoint and replication regulator 1.75301
SERHL2 serine hydrolase-like 2 1.74963
BLM Bloom syndrome, RecQ helicase-like 1.74913
OR5K1 olfactory receptor, family 5, subfamily K, member 1 1.74749
GPR15 G protein-coupled receptor 15 1.7472
CLDND1 claudin domain containing 1 1.7472
OR5K2 olfactory receptor, family 5, subfamily K, member 2 1.7472
CPOX coproporphyrinogen oxidase 1.74669
ST3GAL6-AS1 ST3GAL6 antisense RNA 1 1.74556
CNTN4 contactin 4 1.74438
RAD18 RAD18 E3 ubiquitin protein ligase 1.74251
OR5K4 olfactory receptor, family 5, subfamily K, member 4 1.73939
FANCD2OS FANCD2 opposite strand 1.73926
LOC401052 uncharacterized LOC401052 1.73923
CIDECP cell death-inducing DFFA-like effector c pseudogene 1.73923
FANCD2 Fanconi anemia, complementation group D2 1.73917
EMC3 ER membrane protein complex subunit 3 1.73912
OR5K3 olfactory receptor, family 5, subfamily K, member 3 1.73898
MINA MYC induced nuclear antigen 1.73841
CRYBG3 beta-gamma crystallin domain containing 3 1.73714
RLBP1 retinaldehyde binding protein 1 1.73534
ABHD2 abhydrolase domain containing 2 1.73517
FANCI Fanconi anemia, complementation group I 1.73517
POLG polymerase (DNA directed), gamma 1.73517
OR5H2 olfactory receptor, family 5, subfamily H, member 2 1.73433
MRPS11 mitochondrial ribosomal protein S11 1.73359
MRPL46 mitochondrial ribosomal protein L46 1.73359
H2BFWT H2B histone family, member W, testis-specific 1.72838
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 1.72671
BRPF1 bromodomain and PHD finger containing, 1 1.72543
CAMK1 calcium/calmodulin-dependent protein kinase I 1.72543
OGG1 8-oxoguanine DNA glycosylase 1.72543
TADA3 transcriptional adaptor 3 1.72539
ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 1.72539
ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 1.72529
DET1 de-etiolated homolog 1 (Arabidopsis) 1.72332
AEN apoptosis enhancing nuclease 1.72322
MIR1179 microRNA 1179 1.72322
MIR3529 microRNA 3529 1.72322
MIR7-2 microRNA 7-2 1.72322
ISG20 interferon stimulated exonuclease gene 20kDa 1.72306
MTMR14 myotubularin related protein 14 1.72164
TAMM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 1.71905
THUMPD3-AS1 THUMPD3 antisense RNA 1 1.71905
THUMPD3 THUMP domain containing 3 1.71892
SETD5 SET domain containing 5 1.71883
SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 1.7188
MFGE8 milk fat globule-EGF factor 8 protein 1.71827
ACAN aggrecan 1.71711
HAPLN3 hyaluronan and proteoglycan link protein 3 1.71711
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) 1.71501
PRRT3 proline-rich transmembrane protein 3 1.71483
PRRT3-AS1 PRRT3 antisense RNA 1 1.71483
CRELD1 cysteine-rich with EGF-like domains 1 1.71483
LINC00312 long intergenic non-protein coding RNA 312 1.71421
SSUH2 ssu-2 homolog (C. elegans) 1.71314
CAV3 caveolin 3 1.71278
OXTR oxytocin receptor 1.71273
KIF7 kinesin family member 7 1.71053
ATG7 autophagy related 7 1.70397
ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 1.70364
JAGN1 jagunal homolog 1 (Drosophila) 1.70211
CIDEC cell death-inducing DFFA-like effector c 1.70211
IL17RE interleukin 17 receptor E 1.70201
ARPC4-TTLL3 ARPC4-TTLL3 readthrough 1.70192
RPUSD3 RNA pseudouridylate synthase domain containing 3 1.70192
TTLL3 tubulin tyrosine ligase-like family member 3 1.70192
IL17RC interleukin 17 receptor C 1.70188
NTRK3-AS1 NTRK3 antisense RNA 1 1.69633
TMEM44-AS1 TMEM44 antisense RNA 1 1.69604
TMEM44 transmembrane protein 44 1.69599
CPNE9 copine family member IX 1.69489
AIG1 androgen-induced 1 1.69212
CRTC3 CREB regulated transcription coactivator 3 1.69168
TIMP4 TIMP metallopeptidase inhibitor 4 1.69039
MKRN2OS MKRN2 opposite strand 1.69033
SYN2 synapsin II 1.6903
TSEN2 TSEN2 tRNA splicing endonuclease subunit 1.69014
MKRN2 makorin ring finger protein 2 1.69009
PPARG peroxisome proliferator-activated receptor gamma 1.69005
NMB neuromedin B 1.68521
WDR73 WD repeat domain 73 1.68513
LINC00933 long intergenic non-protein coding RNA 933 1.68513
SCAND2P SCAN domain containing 2 pseudogene 1.68435
ZSCAN2 zinc finger and SCAN domain containing 2 1.68435
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase 1.68408
GBE1 glucan (1,4-alpha-), branching enzyme 1 1.68233
LINC01002 long intergenic non-protein coding RNA 1002 1.68004
TMEM40 transmembrane protein 40 1.67491
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 1.67186
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 1.67088
NGRN neugrin, neurite outgrowth associated 1.66631
NTRK3 neurotrophic tyrosine kinase, receptor, type 3 1.66614
DCBLD2 discoidin, CUB and LCCL domain containing 2 1.6656
PDE8A phosphodiesterase 8A 1.66528
ALPK3 alpha-kinase 3 1.66343
SNORA7A small nucleolar RNA, H/ACA box 7A 1.66205
RPL32 ribosomal protein L32 1.66205
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 1.66198
IQSEC1 IQ motif and Sec7 domain 1 1.66093
GABARAPL3 GABA(A) receptors associated protein like 3, pseudogene 1.65646
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1 1.65396
SLCO3A1 solute carrier organic anion transporter family, member 3A1 1.65301
GDPGP1 GDP-D-glucose phosphorylase 1 1.65232
CIB1 calcium and integrin binding 1 (calmyrin) 1.65232
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 1.65232
TTLL13P tubulin tyrosine ligase-like family member 13, pseudogene 1.65208
LTBP2 latent transforming growth factor beta binding protein 2 1.64968
ZNF710 zinc finger protein 710 1.64845
UBE2Q2P1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1 1.64804
SEC11A SEC11 homolog A (S. cerevisiae) 1.64455
AGBL1 ATP/GTP binding protein-like 1 1.64258
ZNF592 zinc finger protein 592 1.64199
GRM7 glutamate receptor, metabotropic 7 1.62729
KLHL25 kelch-like family member 25 1.62501
MIR1276 microRNA 1276 1.62501
ZNF774 zinc finger protein 774 1.62151
PCNP PEST proteolytic signal containing nuclear protein 1.6117
TRMT10C tRNA methyltransferase 10 homolog C (S. cerevisiae) 1.6117
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) 1.61077
USP20 ubiquitin specific peptidase 20 1.60819
FAM174B family with sequence similarity 174, member B 1.60519
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 1.60495
LINC01197 long intergenic non-protein coding RNA 1197 1.60002
LINC00924 long intergenic non-protein coding RNA 924 1.60002
LINC00882 long intergenic non-protein coding RNA 882 1.59534
ZBTB11-AS1 ZBTB11 antisense RNA 1 1.58912
ZBTB11 zinc finger and BTB domain containing 11 1.58889
RPL24 ribosomal protein L24 1.58889
C15ORF32 chromosome 15 open reading frame 32 1.58767
ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 1.58764
LINC00930 long intergenic non-protein coding RNA 930 1.58754
RGMA repulsive guidance molecule family member a 1.58676
CCDC54 coiled-coil domain containing 54 1.58602
LNP1 leukemia NUP98 fusion partner 1 1.58288
IQGAP1 IQ motif containing GTPase activating protein 1 1.5813
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 1.57995
PDCL3P4 phosducin-like 3 pseudogene 4 1.57906
CEP97 centrosomal protein 97kDa 1.57332
NXPE3 neurexophilin and PC-esterase domain family, member 3 1.57238
TMEM30C transmembrane protein 30C 1.57094
COL8A1 collagen, type VIII, alpha 1 1.56853
LINC00923 long intergenic non-protein coding RNA 923 1.56721
LINC00879 long intergenic non-protein coding RNA 879 1.56009
LOC100507217 1.5599
MIR3175 microRNA 3175 1.55663
HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled 1.5564
TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) 1.55623
LMCD1 LIM and cysteine-rich domains 1 1.55598
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 1.55563
LOC152225 uncharacterized LOC152225 1.55513
TMSB15B thymosin beta 15B 1.5539
MIR5688 microRNA 5688 1.5525
FAM172BP family with sequence similarity 172, member B pseudogene 1.55157
IMPG2 interphotoreceptor matrix proteoglycan 2 1.55096
SENP7 SUMO1/sentrin specific peptidase 7 1.5502
LMCD1-AS1 LMCD1 antisense RNA 1 (head to head) 1.54479
ASB9P1 ankyrin repeat and SOCS box containing 9 pseudogene 1 1.54115
CHL1 cell adhesion molecule L1-like 1.53654
HCG4B HLA complex group 4B (non-protein coding) 1.52944
ZNF654 zinc finger protein 654 1.52864
C3ORF38 chromosome 3 open reading frame 38 1.52864
NIT2 nitrilase family, member 2 1.52852
ZPLD1 zona pellucida-like domain containing 1 1.52747
TMEM45A transmembrane protein 45A 1.52696
ALCAM activated leukocyte cell adhesion molecule 1.52659
MIR3921 microRNA 3921 1.5255
MIR4796 microRNA 4796 1.5254
GUSBP5 glucuronidase, beta pseudogene 5 1.51661
TBC1D23 TBC1 domain family, member 23 1.51568
ARRDC4 arrestin domain containing 4 1.51525
ADAMTSL3 ADAMTS-like 3 1.51411
GTPBP8 GTP-binding protein 8 (putative) 1.5128
CHD2 chromodomain helicase DNA binding protein 2 1.51054
ABI3BP ABI family, member 3 (NESH) binding protein 1.50456
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 1.50349
LINC00883 long intergenic non-protein coding RNA 883 1.50305
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase 1.50129
EPHA6 EPH receptor A6 1.49732
CHMP2B charged multivesicular body protein 2B 1.49693
POU1F1 POU class 1 homeobox 1 1.49693
MIR4795 microRNA 4795 1.49689
CGGBP1 CGG triplet repeat binding protein 1 1.49462
SIDT1 SID1 transmembrane family, member 1 1.49243
MIR4446 microRNA 4446 1.49241
SPICE1 spindle and centriole associated protein 1 1.49239
CFAP44-AS1 CFAP44 antisense RNA 1 1.49186
CFAP44 cilia and flagella associated protein 44 1.49185
C3ORF17 chromosome 3 open reading frame 17 1.49165
KIAA1524 KIAA1524 1.49051
VIMP VCP-interacting membrane selenoprotein 1.49046
LOC100507472 uncharacterized LOC100507472 1.49019
SNRPA1 small nuclear ribonucleoprotein polypeptide A' 1.49019
MIR1469 microRNA 1469 1.48838
NR2F2 nuclear receptor subfamily 2, group F, member 2 1.48838
PVRL3 poliovirus receptor-related 3 1.48802
PVRL3-AS1 PVRL3 antisense RNA 1 1.48799
FREM3 FRAS1 related extracellular matrix 3 1.48704
CMSS1 cms1 ribosomal small subunit homolog (yeast) 1.48425
FILIP1L filamin A interacting protein 1-like 1.48412
RETNLB resistin like beta 1.47854
TRAT1 T cell receptor associated transmembrane adaptor 1 1.47846
PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 1.47716
ZBED2 zinc finger, BED-type containing 2 1.47713
HHLA2 HERV-H LTR-associating 2 1.47651
MYH15 myosin, heavy chain 15 1.47631
DRD3 dopamine receptor D3 1.47444
ZNF80 zinc finger protein 80 1.47439
QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 1.47438
LINC00635 long intergenic non-protein coding RNA 635 1.47414
CD96 CD96 molecule 1.47333
MIR4714 microRNA 4714 1.4721
SPATA8 spermatogenesis associated 8 1.47189
C3ORF52 chromosome 3 open reading frame 52 1.47164
MIR567 microRNA 567 1.47164
GCSAM germinal center-associated, signaling and motility 1.47158
IFT57 intraflagellar transport 57 1.47062
NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 1.4693
KIAA2018 KIAA2018 1.46912
MCTP2 multiple C2 domains, transmembrane 2 1.4685
LINC01205 long intergenic non-protein coding RNA 1205 1.46802
DPPA4 developmental pluripotency associated 4 1.46796
TAGLN3 transgelin 3 1.46653
CD200R1L CD200 receptor 1-like 1.46647
TMPRSS7 transmembrane protease, serine 7 1.46646
ABHD10 abhydrolase domain containing 10 1.46646
CD200R1 CD200 receptor 1 1.46637
FAM169B family with sequence similarity 169, member B 1.46407
ALDH1A3 aldehyde dehydrogenase 1 family, member A3 1.46372
SLC9C1 solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 1.46316
PHLDB2 pleckstrin homology-like domain, family B, member 2 1.46294
LRRK1 leucine-rich repeat kinase 1 1.46024
ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 1.45995
SLC35A5 solute carrier family 35, member A5 1.45798
GUCA1C guanylate cyclase activator 1C 1.45572
SYNM synemin, intermediate filament protein 1.45529
CADM2-AS2 CADM2 antisense RNA 2 1.45519
LMBRD1 LMBR1 domain containing 1 1.45404
LRRC28 leucine rich repeat containing 28 1.45401
TTC23 tetratricopeptide repeat domain 23 1.45387
DZIP3 DAZ interacting zinc finger protein 3 1.4537
MIR568 microRNA 568 1.4526
LINC00636 long intergenic non-protein coding RNA 636 1.45246
COL9A1 collagen, type IX, alpha 1 1.45239
TIGIT T cell immunoreceptor with Ig and ITIM domains 1.45225
TM2D3 TM2 domain containing 3 1.45192
LYSMD4 LysM, putative peptidoglycan-binding, domain containing 4 1.44992
ZDHHC23 zinc finger, DHHC-type containing 23 1.4499
BTLA B and T lymphocyte associated 1.44968
KIAA1407 KIAA1407 1.4495
NSUN3 NOP2/Sun domain family, member 3 1.44946
CD200 CD200 molecule 1.44894
CD47 CD47 molecule 1.44893
BOC BOC cell adhesion associated, oncogene regulated 1.44845
LINC00488 long intergenic non-protein coding RNA 488 1.44609
FLJ22763 uncharacterized LOC401081 1.44608
DPPA2 developmental pluripotency associated 2 1.44604
CCDC80 coiled-coil domain containing 80 1.44449
DHFRL1 dihydrofolate reductase-like 1 1.44269
DNM1P46 dynamin 1 pseudogene 46 1.44245
LINS lines homolog (Drosophila) 1.44222
ASB7 ankyrin repeat and SOCS box containing 7 1.44191
CHSY1 chondroitin sulfate synthase 1 1.44083
ZBTB20-AS1 ZBTB20 antisense RNA 1 1.44011
PGPEP1L pyroglutamyl-peptidase I-like 1.43978
BBX bobby sox homolog (Drosophila) 1.4397
MEF2A myocyte enhancer factor 2A 1.43721
ATG3 autophagy related 3 1.43671
OR4F15 olfactory receptor, family 4, subfamily F, member 15 1.42932
COL19A1 collagen, type XIX, alpha 1 1.42881
C14ORF1 chromosome 14 open reading frame 1 1.42873
OR4F6 olfactory receptor, family 4, subfamily F, member 6 1.4285
IGF1R insulin-like growth factor 1 receptor 1.42843
GRAMD1C GRAM domain containing 1C 1.42818
TARSL2 threonyl-tRNA synthetase-like 2 1.42772
STX19 syntaxin 19 1.4272
KCNQ5-AS1 KCNQ5 antisense RNA 1 1.42643
ARL13B ADP-ribosylation factor-like 13B 1.42577
TGFB3 transforming growth factor, beta 3 1.42219
GPATCH2L G patch domain containing 2-like 1.42151
IFT43 intraflagellar transport 43 1.42144
PCSK6 proprotein convertase subtilisin/kexin type 6 1.42048
BATF basic leucine zipper transcription factor, ATF-like 1.42047
MORC4 MORC family CW-type zinc finger 4 1.41827
ESRRB estrogen-related receptor beta 1.41702
ANGEL1 angel homolog 1 (Drosophila) 1.4162
VASH1 vasohibin 1 1.41607
LRRC74A leucine rich repeat containing 74A 1.41548
FAM135A family with sequence similarity 135, member A 1.4153
RIMS1 regulating synaptic membrane exocytosis 1 1.41296
SDHAF4 succinate dehydrogenase complex assembly factor 4 1.41145
FLVCR2 feline leukemia virus subgroup C cellular receptor family, member 2 1.407
SPATA41 spermatogenesis associated 41 (non-protein coding) 1.40637
TTLL5 tubulin tyrosine ligase-like family member 5 1.40428
OGFRL1 opioid growth factor receptor-like 1 1.40396
FAM106CP family with sequence similarity 106, member C, pseudogene 1.40291
JDP2 Jun dimerization protein 2 1.39983
VGLL3 vestigial-like family member 3 1.39622
ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 1.39249
AKAP13 A kinase (PRKA) anchor protein 13 1.39205
KHDC1L KH homology domain containing 1-like 1.38969
SMAP1 small ArfGAP 1 1.38886
USP32P1 ubiquitin specific peptidase 32 pseudogene 1 1.38856
TUSC7 tumor suppressor candidate 7 (non-protein coding) 1.38788
MIR198 microRNA 198 1.38697
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 1.38683
SLC17A5 solute carrier family 17 (acidic sugar transporter), member 5 1.3867
CERS3 ceramide synthase 3 1.38631
CD109 CD109 molecule 1.38604
DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 1.38583
OOEP oocyte expressed protein 1.38583
KHDC3L KH domain containing 3-like, subcortical maternal complex member 1.38583
MIR4282 microRNA 4282 1.38581
FSTL1 follistatin-like 1 1.38513
MIR30C2 microRNA 30c-2 1.38414
CCDC144A coiled-coil domain containing 144A 1.38146
FOS FBJ murine osteosarcoma viral oncogene homolog 1.37953
LOC642423 golgin A2 pseudogene 1.37952
LINC01220 long intergenic non-protein coding RNA 1220 1.37918
ZBTB20 zinc finger and BTB domain containing 20 1.37901
OR4F13P olfactory receptor, family 4, subfamily F, member 13 pseudogene 1.37241
LRRC58 leucine rich repeat containing 58 1.36919
MIR30A microRNA 30a 1.36883
MB21D1 Mab-21 domain containing 1 1.36689
DPPA5 developmental pluripotency associated 5 1.36681
KHDC1 KH homology domain containing 1 1.36681
NR1I2 nuclear receptor subfamily 1, group I, member 2 1.36621
GSK3B glycogen synthase kinase 3 beta 1.36526
HACD2 3-hydroxyacyl-CoA dehydratase 2 1.36137
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 1.35955
LINC00472 long intergenic non-protein coding RNA 472 1.35952
GPR156 G protein-coupled receptor 156 1.35924
MYLK-AS1 MYLK antisense RNA 1 1.35839
B4GALT4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 1.35811
UPK1B uroplakin 1B 1.35811
ADCY5 adenylate cyclase 5 1.35775
B3GAT2 beta-1,3-glucuronyltransferase 2 1.35643
IGSF11-AS1 IGSF11 antisense RNA 1 1.35423
CD86 CD86 molecule 1.35032
MTO1 mitochondrial tRNA translation optimization 1 1.35011
MAATS1 MYCBP-associated, testis expressed 1 1.34842
NDUFB4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa 1.34826
COX17 COX17 cytochrome c oxidase copper chaperone 1.3481
POPDC2 popeye domain containing 2 1.34803
ARHGAP31 Rho GTPase activating protein 31 1.34787
PLA1A phospholipase A1 member A 1.34698
ADPRH ADP-ribosylarginine hydrolase 1.34612
RABL3 RAB, member of RAS oncogene family-like 3 1.34449
HGD homogentisate 1,2-dioxygenase 1.34449
CD80 CD80 molecule 1.34343
POGLUT1 protein O-glucosyltransferase 1 1.34343
TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 1.34343
TMEM39A transmembrane protein 39A 1.34343
GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa 1.34106
MORC1 MORC family CW-type zinc finger 1 1.33952
MYLK myosin light chain kinase 1.33809
CCDC14 coiled-coil domain containing 14 1.33695
GAB1 GRB2-associated binding protein 1 1.33653
ROPN1 rhophilin associated tail protein 1 1.33568
C3ORF30 chromosome 3 open reading frame 30 1.33562
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 1.33529
ILDR1 immunoglobulin-like domain containing receptor 1 1.33379
POLQ polymerase (DNA directed), theta 1.3326
DTX3L deltex 3 like, E3 ubiquitin ligase 1.33245
CCDC58 coiled-coil domain containing 58 1.33241
CASR calcium-sensing receptor 1.33168
CSTA cystatin A (stefin A) 1.33071
FAM162A family with sequence similarity 162, member A 1.33029
WDR5B WD repeat domain 5B 1.33029
DEFB132 defensin, beta 132 1.32863
HCLS1 hematopoietic cell-specific Lyn substrate 1 1.32839

low copy number

Symbol Name Standardized Value
COL11A1 collagen, type XI, alpha 1 -2.81082
RNU6-64P RNA, U6 small nuclear 64, pseudogene -2.73036
TESC tescalcin -2.72158
KLF7 Kruppel-like factor 7 (ubiquitous) -2.70893
DIO2 deiodinase, iodothyronine, type II -2.70261
CSN3 casein kappa -2.7013
MIR5007 microRNA 5007 -2.45923
SEL1L sel-1 suppressor of lin-12-like (C. elegans) -2.43129
OTUD6A OTU deubiquitinase 6A -2.3514
ADGRL2 adhesion G protein-coupled receptor L2 -2.3514
RNU6-71P RNA, U6 small nuclear 71, pseudogene -2.27377
SNORA79 small nucleolar RNA, H/ACA box 79 -2.2714
KCNC2 potassium channel, voltage gated Shaw related subfamily C, member 2 -2.20896
NTN1 netrin 1 -2.16409
GTF2A1 general transcription factor IIA, 1, 19/37kDa -2.14741
PTPN21 protein tyrosine phosphatase, non-receptor type 21 -2.13416
ZC3H14 zinc finger CCCH-type containing 14 -2.13394
SPATA7 spermatogenesis associated 7 -2.13386
STON2 stonin 2 -2.12747
ERI3 ERI1 exoribonuclease family member 3 -2.12213
LSM8 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) -2.09291
ZNF815P zinc finger protein 815, pseudogene -2.09285
GOLGA5 golgin A5 -2.07515
COX8C cytochrome c oxidase subunit VIIIC -2.0745
MOAP1 modulator of apoptosis 1 -2.07437
TMEM251 transmembrane protein 251 -2.07437
C14ORF142 chromosome 14 open reading frame 142 -2.07436
UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) -2.07431
CHGA chromogranin A -2.07422
ITPK1-AS1 ITPK1 antisense RNA 1 -2.07404
BTBD7 BTB (POZ) domain containing 7 -2.06366
TDP1 tyrosyl-DNA phosphodiesterase 1 -2.0628
CALM1 calmodulin 1 (phosphorylase kinase, delta) -2.06256
FLRT2 fibronectin leucine rich transmembrane protein 2 -2.04441
GPR68 G protein-coupled receptor 68 -2.04322
LOC283585 uncharacterized LOC283585 -2.03966
TTC8 tetratricopeptide repeat domain 8 -2.03763
TC2N tandem C2 domains, nuclear -2.03273
CATSPERB catsper channel auxiliary subunit beta -2.03261
TSHR thyroid stimulating hormone receptor -2.02544
SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) -2.02287
DIO2-AS1 DIO2 antisense RNA 1 -2.00048
NDUFB1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa -1.99134
CPSF2 cleavage and polyadenylation specific factor 2, 100kDa -1.99132
ATXN3 ataxin 3 -1.99132
PSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 -1.9794
GSKIP GSK3B interacting protein -1.97675
ATG2B autophagy related 2B -1.97668
PAPOLA poly(A) polymerase alpha -1.9766
AK7 adenylate kinase 7 -1.97658
LINC00341 long intergenic non-protein coding RNA 341 -1.97161
SCARNA13 small Cajal body-specific RNA 13 -1.97137
SNHG10 small nucleolar RNA host gene 10 -1.97137
GLRX5 glutaredoxin 5 -1.97137
TCL1B T-cell leukemia/lymphoma 1B -1.97133
PPP4R4 protein phosphatase 4, regulatory subunit 4 -1.97133
TCL6 T-cell leukemia/lymphoma 6 (non-protein coding) -1.97133
SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 -1.97133
TCL1A T-cell leukemia/lymphoma 1A -1.97133
IFI27L2 interferon, alpha-inducible protein 27-like 2 -1.97133
IFI27 interferon, alpha-inducible protein 27 -1.9711
IFI27L1 interferon, alpha-inducible protein 27-like 1 -1.9711
SERPINA13P serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene -1.97092
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 -1.97092
SERPINA12 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 -1.97092
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 -1.97092
SERPINA11 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 -1.97071
SERPINA9 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 -1.97071
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -1.97068
MIR3173 microRNA 3173 -1.97064
DICER1 dicer 1, ribonuclease type III -1.97064
LINC00521 long intergenic non-protein coding RNA 521 -1.97044
FAM181A family with sequence similarity 181, member A -1.97044
FAM181A-AS1 FAM181A antisense RNA 1 -1.97044
OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 -1.97038
DDX24 DEAD (Asp-Glu-Ala-Asp) box helicase 24 -1.97038
SNORA11B small nucleolar RNA, H/ACA box 11B -1.96224
C14ORF159 chromosome 14 open reading frame 159 -1.96224
POTEH POTE ankyrin domain family, member H -1.95919
LINC01146 long intergenic non-protein coding RNA 1146 -1.95888
SLC25A47 solute carrier family 25, member 47 -1.95306
SLC25A29 solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 -1.95304
MIR345 microRNA 345 -1.95302
EML1 echinoderm microtubule associated protein like 1 -1.95287
BEGAIN brain-enriched guanylate kinase-associated -1.95218
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -1.9324
LGMN legumain -1.93204
TRIP11 thyroid hormone receptor interactor 11 -1.91859
LINC01550 long intergenic non-protein coding RNA 1550 -1.91485
NRDE2 NRDE-2, necessary for RNA interference, domain containing -1.90851
FOXN3-AS2 FOXN3 antisense RNA 2 -1.90846
SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 -1.90099
ZNF429 zinc finger protein 429 -1.89079
GPR65 G protein-coupled receptor 65 -1.8903
WARS tryptophanyl-tRNA synthetase -1.88512
HHIPL1 HHIP-like 1 -1.88512
DEGS2 delta(4)-desaturase, sphingolipid 2 -1.8851
EVL Enah/Vasp-like -1.8851
YY1 YY1 transcription factor -1.88505
LINC00523 long intergenic non-protein coding RNA 523 -1.88436
SNORD127 small nucleolar RNA, C/D box 127 -1.87614
C14ORF177 chromosome 14 open reading frame 177 -1.87131
SETD3 SET domain containing 3 -1.86632
SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 -1.84915
LINC00642 long intergenic non-protein coding RNA 642 -1.84728
FNBP1 formin binding protein 1 -1.84505
SYNE3 spectrin repeat containing, nuclear envelope family member 3 -1.84155
GSC goosecoid homeobox -1.84094
EML5 echinoderm microtubule associated protein like 5 -1.83053
WDR25 WD repeat domain 25 -1.82748
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 -1.8264
VRK1 vaccinia related kinase 1 -1.81054
FOXN3-AS1 FOXN3 antisense RNA 1 -1.81009
PRIMA1 proline rich membrane anchor 1 -1.80102
KCNK13 potassium channel, two pore domain subfamily K, member 13 -1.79614
C14ORF132 chromosome 14 open reading frame 132 -1.78907
DICER1-AS1 DICER1 antisense RNA 1 -1.78904
UNC79 unc-79 homolog (C. elegans) -1.78454
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1 -1.78374
FKBP3 FK506 binding protein 3, 25kDa -1.76957
PRPF39 pre-mRNA processing factor 39 -1.73597
CCDC85C coiled-coil domain containing 85C -1.72386
CCNK cyclin K -1.72379
FANCM Fanconi anemia, complementation group M -1.71523
CEP128 centrosomal protein 128kDa -1.70804
MIS18BP1 MIS18 binding protein 1 -1.70675
EFCAB11 EF-hand calcium binding domain 11 -1.70467
FBLN5 fibulin 5 -1.69732
KCNK10 potassium channel, two pore domain subfamily K, member 10 -1.6926
FAM179B family with sequence similarity 179, member B -1.69227
KLK2 kallikrein-related peptidase 2 -1.67737
ITPK1 inositol-tetrakisphosphate 1-kinase -1.67056
LOC100129345 uncharacterized LOC100129345 -1.66965
BDKRB2 bradykinin receptor B2 -1.66237
TUNAR TCL1 upstream neural differentiation-associated RNA -1.62744
ASB2 ankyrin repeat and SOCS box containing 2 -1.62558
WNK1 WNK lysine deficient protein kinase 1 -1.60026
BDKRB1 bradykinin receptor B1 -1.59652
GALC galactosylceramidase -1.59387
CLMN calmin (calponin-like, transmembrane) -1.59343
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) -1.59221
KLK15 kallikrein-related peptidase 15 -1.57283
CCDC88C coiled-coil domain containing 88C -1.53319
GOLGA8T golgin A8 family, member T -1.49787
NBPF1 neuroblastoma breakpoint family, member 1 -1.46235
KCNK2 potassium channel, two pore domain subfamily K, member 2 -1.45386
MACROD2 MACRO domain containing 2 -1.45227
LOC649352 ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like -1.44017
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -1.37669
PRPS2 phosphoribosyl pyrophosphate synthetase 2 -1.3652
GRHL2 grainyhead-like 2 (Drosophila) -1.3538
SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 -1.35078
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 -1.34716
MCTP1 multiple C2 domains, transmembrane 1 -1.34688
DEFB109P1 defensin, beta 109, pseudogene 1 -1.33612
GRM5 glutamate receptor, metabotropic 5 -1.32776