COLO-205 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

94 genes with high or low copy number in COLO-205 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00326 long intergenic non-protein coding RNA 326 4.51153
TBPL1 TBP-like 1 4.51153
TCF21 transcription factor 21 4.51153
EYA4 EYA transcriptional coactivator and phosphatase 4 4.51153
IFNGR1 interferon gamma receptor 1 3.12177
PERP PERP, TP53 apoptosis effector 3.12177
IL20RA interleukin 20 receptor, alpha 3.12177
OLIG3 oligodendrocyte transcription factor 3 3.12177
NHEG1 neuroblastoma highly expressed 1 3.12177
IL22RA2 interleukin 22 receptor, alpha 2 3.12177
ZFAND3 zinc finger, AN1-type domain 3 2.93899
ALDH8A1 aldehyde dehydrogenase 8 family, member A1 2.93899
MAP3K5 mitogen-activated protein kinase kinase kinase 5 2.93899
TBCC tubulin folding cofactor C 2.93899
ATP6V0CP3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 2.93899
PDE7B phosphodiesterase 7B 2.93899
MTFR2 mitochondrial fission regulator 2 2.93899
LOC100130476 uncharacterized LOC100130476 2.93899
BCLAF1 BCL2-associated transcription factor 1 2.93899
MIR3662 microRNA 3662 2.93899
PRPH2 peripherin 2 (retinal degeneration, slow) 2.93899
RPL7L1 ribosomal protein L7-like 1 2.93899
C6ORF226 chromosome 6 open reading frame 226 2.93899
PEX7 peroxisomal biogenesis factor 7 2.93899
SLC35D3 solute carrier family 35, member D3 2.93899
HBS1L HBS1-like translational GTPase 2.93899
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 2.93899
GLTSCR1L GLTSCR1-like 2.93899
LINC00271 long intergenic non-protein coding RNA 271 2.76305
BTBD9 BTB (POZ) domain containing 9 2.76305
UBR2 ubiquitin protein ligase E3 component n-recognin 2 2.64759
AHI1 Abelson helper integration site 1 2.64759
ADCY10P1 adenylate cyclase 10 (soluble) pseudogene 1 2.64759
TREML2 triggering receptor expressed on myeloid cells-like 2 2.64759
TREML1 triggering receptor expressed on myeloid cells-like 1 2.64759
TREML4 triggering receptor expressed on myeloid cells-like 4 2.64759
TREM2 triggering receptor expressed on myeloid cells 2 2.64759
TREM1 triggering receptor expressed on myeloid cells 1 2.64759
OARD1 O-acyl-ADP-ribose deacylase 1 2.64759
APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 2.64759
TSPO2 translocator protein 2 2.64759
TREML5P triggering receptor expressed on myeloid cells-like 5, pseudogene 2.64759
TREML3P triggering receptor expressed on myeloid cells-like 3, pseudogene 2.64759
MYB v-myb avian myeloblastosis viral oncogene homolog 2.64759
NFYA nuclear transcription factor Y, alpha 2.64759
UNC5CL unc-5 homolog C (C. elegans)-like 2.64759
PGC progastricsin (pepsinogen C) 2.59653
PRICKLE4 prickle homolog 4 (Drosophila) 2.59653
LINC00951 long intergenic non-protein coding RNA 951 2.59653
TDRG1 testis development related 1 (non-protein coding) 2.59653
LRFN2 leucine rich repeat and fibronectin type III domain containing 2 2.59653
GLP1R glucagon-like peptide 1 receptor 2.59653
FOXP4 forkhead box P4 2.59653
KCNK16 potassium channel, two pore domain subfamily K, member 16 2.59653
TFEB transcription factor EB 2.59653
GLO1 glyoxalase I 2.59653
DNAH8 dynein, axonemal, heavy chain 8 2.59653
KCNK5 potassium channel, two pore domain subfamily K, member 5 2.59653
KCNK17 potassium channel, two pore domain subfamily K, member 17 2.59653
LOC100131047 uncharacterized LOC100131047 2.59653
NCR2 natural cytotoxicity triggering receptor 2 2.59653
MDFI MyoD family inhibitor 2.59653
SAYSD1 SAYSVFN motif domain containing 1 2.59653
MIR4641 microRNA 4641 2.59653
TOMM6 translocase of outer mitochondrial membrane 6 homolog (yeast) 2.59653
FRS3 fibroblast growth factor receptor substrate 3 2.59653
TRERF1 transcriptional regulating factor 1 2.59653
C6ORF132 chromosome 6 open reading frame 132 2.49065
PTP4A1 protein tyrosine phosphatase type IVA, member 1 2.49065
USP49 ubiquitin specific peptidase 49 2.49065
MRPS10 mitochondrial ribosomal protein S10 2.49065
LOC441155 zinc finger CCCH-type domain-containing-like 2.49065
MOCS1 molybdenum cofactor synthesis 1 2.49065
BYSL bystin-like 2.49065
MED20 mediator complex subunit 20 2.49065
GUCA1A guanylate cyclase activator 1A (retina) 2.49065
GUCA1B guanylate cyclase activator 1B (retina) 2.49065
DAAM2 dishevelled associated activator of morphogenesis 2 2.49065
KIF6 kinesin family member 6 2.44392
CCND3 cyclin D3 2.44392
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 2.44392
HMGA1P7 high mobility group AT-hook 1 pseudogene 7 2.14116
SGK1 serum/glucocorticoid regulated kinase 1 2.14116
SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12 2.14116
MAP7 microtubule-associated protein 7 2.12703
MIR4500 microRNA 4500 2.10992
SLITRK5 SLIT and NTRK-like family, member 5 2.10992
MIR4500HG MIR4500 host gene 2.10992
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 2.10038
PHF3 PHD finger protein 3 2.09431
EYS eyes shut homolog (Drosophila) 2.08391

low copy number

Symbol Name Standardized Value
SMAD4 SMAD family member 4 -2.82872
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485
BTNL3 butyrophilin-like 3 -2.72661