COLO-320-HSR Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: colorectal adenocarcinoma (Cell Line Ontology, CLO_0002547)
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Genes

94 genes with high or low copy number in COLO-320-HSR relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
IMP4 IMP4, U3 small nucleolar ribonucleoprotein 4.51153
GYPC glycophorin C (Gerbich blood group) 4.51153
POLR2D polymerase (RNA) II (DNA directed) polypeptide D 4.51153
BIN1 bridging integrator 1 4.51153
IWS1 IWS1 homolog (S. cerevisiae) 4.51153
AMMECR1L AMMECR1-like 4.51153
MZT2B mitotic spindle organizing protein 2B 4.51153
SAP130 Sin3A-associated protein, 130kDa 4.51153
CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1 4.51153
TUBA3E tubulin, alpha 3e 4.51153
WDR33 WD repeat domain 33 4.51153
LOC389033 placenta-specific 9 pseudogene 4.51153
CNTNAP5 contactin associated protein-like 5 4.51153
MYO7B myosin VIIB 4.51153
UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 4.51153
MAP3K2 mitogen-activated protein kinase kinase kinase 2 4.51153
CCDC115 coiled-coil domain containing 115 4.51153
GPR17 G protein-coupled receptor 17 4.51153
LIMS2 LIM and senescent cell antigen-like domains 2 4.51153
CCDC74B coiled-coil domain containing 74B 4.51153
LOC151121 uncharacterized LOC151121 4.51153
HS6ST1 heparan sulfate 6-O-sulfotransferase 1 4.51153
PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) 4.51153
ERCC3 excision repair cross-complementation group 3 4.51153
PROC protein C (inactivator of coagulation factors Va and VIIIa) 4.51153
MIR4783 microRNA 4783 4.51153
SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) 4.51153
SFT2D3 SFT2 domain containing 3 4.51153
RAB6C RAB6C, member RAS oncogene family 4.51153
SNORD37 small nucleolar RNA, C/D box 37 2.76305
BORA bora, aurora kinase A activator 2.76305
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease 2.76305
MZT1 mitotic spindle organizing protein 1 2.76305
ATP5EP2 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 2.64759
PDX1 pancreatic and duodenal homeobox 1 2.64759
CDX2 caudal type homeobox 2 2.64759
PIBF1 progesterone immunomodulatory binding factor 1 2.59653
KLF5 Kruppel-like factor 5 (intestinal) 2.59653
HIST2H2BF histone cluster 2, H2bf 2.36889
HIST2H3D histone cluster 2, H3d 2.36889
FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) 2.36889
BCL9 B-cell CLL/lymphoma 9 2.30944
FMO5 flavin containing monooxygenase 5 2.30944
CHD1L chromodomain helicase DNA binding protein 1-like 2.30944
ACP6 acid phosphatase 6, lysophosphatidic 2.30944
PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit 2.283
HIST2H2BE histone cluster 2, H2be 2.283
HIST2H2AB histone cluster 2, H2ab 2.283
HIST2H2AC histone cluster 2, H2ac 2.283
BOLA1 bolA family member 1 2.283
LINC00624 long intergenic non-protein coding RNA 624 2.283
NBPF13P neuroblastoma breakpoint family, member 13, pseudogene 2.283
OTUD7B OTU deubiquitinase 7B 2.283
MTMR11 myotubularin related protein 11 2.283
SF3B4 splicing factor 3b, subunit 4, 49kDa 2.283
SV2A synaptic vesicle glycoprotein 2A 2.283
PLEKHO1 pleckstrin homology domain containing, family O member 1 2.25904
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 2.25904
APH1A APH1A gamma secretase subunit 2.25904
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 2.25904
C1ORF54 chromosome 1 open reading frame 54 2.25904
CA14 carbonic anhydrase XIV 2.25904
PRPF3 pre-mRNA processing factor 3 2.24845
MRPS21 mitochondrial ribosomal protein S21 2.24845
RPRD2 regulation of nuclear pre-mRNA domain containing 2 2.23324
TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) 2.23078
GOLPH3L golgi phosphoprotein 3-like 2.23078
ENSA endosulfine alpha 2.23078
FALEC focally amplified long non-coding RNA in epithelial cancer 2.23078
HORMAD1 HORMA domain containing 1 2.23078
CTSS cathepsin S 2.23078
CTSK cathepsin K 2.23078
ECM1 extracellular matrix protein 1 2.23078
MIR4257 microRNA 4257 2.22917
MCL1 myeloid cell leukemia 1 2.22917
ADAMTSL4 ADAMTS-like 4 2.22917
FAM84B family with sequence similarity 84, member B 2.15847
POTEF POTE ankyrin domain family, member F 2.15316
DUSP22 dual specificity phosphatase 22 2.12527
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
SNORA9 small nucleolar RNA, H/ACA box 9 2.07851
HIST2H4A histone cluster 2, H4a 2.0752
HIST2H3C histone cluster 2, H3c 2.0752
HIST2H2BC histone cluster 2, H2bc (pseudogene) 2.0752
HIST2H2AA4 histone cluster 2, H2aa4 2.0752
MIR1205 microRNA 1205 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
ZNF705G zinc finger protein 705G -2.86003
HCG4B HLA complex group 4B (non-protein coding) -2.75184
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -2.73329