COLO-668 Gene Set
Genes
35 genes with high or low copy number in COLO-668 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
high copy number
| Symbol |
Name |
Standardized Value |
|
NFYC
|
nuclear transcription factor Y, gamma
|
2.39327
|
|
RIMS3
|
regulating synaptic membrane exocytosis 3
|
2.39327
|
|
ZFP69B
|
ZFP69 zinc finger protein B
|
2.35236
|
|
ZNF684
|
zinc finger protein 684
|
2.35236
|
|
MACF1
|
microtubule-actin crosslinking factor 1
|
2.35236
|
|
EXO5
|
exonuclease 5
|
2.35236
|
|
ZFP69
|
ZFP69 zinc finger protein
|
2.35236
|
|
HEYL
|
hes-related family bHLH transcription factor with YRPW motif-like
|
2.3178
|
|
COL9A2
|
collagen, type IX, alpha 2
|
2.3178
|
|
SMAP2
|
small ArfGAP2
|
2.3178
|
|
TMCO2
|
transmembrane and coiled-coil domains 2
|
2.30944
|
|
ZMPSTE24
|
zinc metallopeptidase STE24
|
2.30944
|
|
BMP8A
|
bone morphogenetic protein 8a
|
2.30944
|
|
NT5C1A
|
5'-nucleotidase, cytosolic IA
|
2.30944
|
|
RLF
|
rearranged L-myc fusion
|
2.283
|
|
HPCAL4
|
hippocalcin like 4
|
2.283
|
|
CAP1
|
CAP, adenylate cyclase-associated protein 1 (yeast)
|
2.283
|
|
MFSD2A
|
major facilitator superfamily domain containing 2A
|
2.25904
|
|
PPIE
|
peptidylprolyl isomerase E (cyclophilin E)
|
2.24845
|
|
OXCT2
|
3-oxoacid CoA transferase 2
|
2.24845
|
|
BMP8B
|
bone morphogenetic protein 8b
|
2.24845
|
|
TRIT1
|
tRNA isopentenyltransferase 1
|
2.24139
|
low copy number
| Symbol |
Name |
Standardized Value |
|
TENM2
|
teneurin transmembrane protein 2
|
-5.12655
|
|
BMPR1A
|
bone morphogenetic protein receptor, type IA
|
-3.83684
|
|
LDB3
|
LIM domain binding 3
|
-3.83684
|
|
LRRTM2
|
leucine rich repeat transmembrane neuronal 2
|
-3.7119
|
|
SIL1
|
SIL1 nucleotide exchange factor
|
-3.56449
|
|
CTNNA1
|
catenin (cadherin-associated protein), alpha 1, 102kDa
|
-3.486
|
|
SOX2-OT
|
SOX2 overlapping transcript
|
-3.44551
|
|
SOX2
|
SRY (sex determining region Y)-box 2
|
-3.44551
|
|
ZNF419
|
zinc finger protein 419
|
-3.32901
|
|
PRKG1
|
protein kinase, cGMP-dependent, type I
|
-3.08009
|
|
MIR605
|
microRNA 605
|
-3.0433
|
|
LOC727924
|
uncharacterized LOC727924
|
-2.95958
|
|
CES1P1
|
carboxylesterase 1 pseudogene 1
|
-2.74485
|
