COLO-678 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

55 genes with high or low copy number in COLO-678 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
EDIL3 EGF-like repeats and discoidin I-like domains 3 4.51153
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 4.51153
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 4.51153
ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 4.51153
POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 2.3178
ANKRD34A ankyrin repeat domain 34A 2.3178
SACK1B scaffolding CK1 anchoring protein B 2.12703

low copy number

Symbol Name Standardized Value
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase -3.83684
NUDT16L1 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 -3.83684
WDR27 WD repeat domain 27 -3.83684
ANKS3 ankyrin repeat and sterile alpha motif domain containing 3 -3.83684
LOC728323 uncharacterized LOC728323 -3.48051
ARHGAP28 Rho GTPase activating protein 28 -3.38669
TMEM260 transmembrane protein 260 -3.32901
OTX2 orthodenticle homeobox 2 -3.32901
OTX2-AS1 OTX2 antisense RNA 1 (head to head) -3.32901
FKBP5 FK506 binding protein 5 -3.29865
SOCS5 suppressor of cytokine signaling 5 -3.29865
TULP1 tubby like protein 1 -3.29865
LOC285847 uncharacterized LOC285847 -3.29865
MIR5690 microRNA 5690 -3.29865
ARMC12 armadillo repeat containing 12 -3.29865
SETD9 SET domain containing 9 -3.2703
MIER3 mesoderm induction early response 1, family member 3 -3.2703
MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase -3.2703
LOC728084 uncharacterized LOC728084 -3.2703
SUCLG1 succinate-CoA ligase, alpha subunit -3.24687
LOC283194 uncharacterized LOC283194 -3.24687
MPEG1 macrophage expressed 1 -3.24687
PDE4C phosphodiesterase 4C, cAMP-specific -3.24687
MAGEA6 melanoma antigen family A6 -3.24687
DTX4 deltex 4, E3 ubiquitin ligase -3.24687
LOC729966 uncharacterized LOC729966 -3.24687
CTNNA2 catenin (cadherin-associated protein), alpha 2 -3.24687
GABRQ gamma-aminobutyric acid (GABA) A receptor, theta -3.24687
FAM111A family with sequence similarity 111, member A -3.24687
OR5A2 olfactory receptor, family 5, subfamily A, member 2 -3.24687
OR5A1 olfactory receptor, family 5, subfamily A, member 1 -3.24687
OR5AN1 olfactory receptor, family 5, subfamily AN, member 1 -3.24687
FAM111B family with sequence similarity 111, member B -3.24687
FUNDC2P2 FUN14 domain containing 2 pseudogene 2 -3.24687
DNAH6 dynein, axonemal, heavy chain 6 -3.24687
RHD Rh blood group, D antigen -3.17091
OR5J2 olfactory receptor, family 5, subfamily J, member 2 -3.16503
WLS wntless Wnt ligand secretion mediator -3.14331
ALPK2 alpha-kinase 2 -3.14331
TRAV12-1 T cell receptor alpha variable 12-1 -3.0433
AMER1 APC membrane recruitment protein 1 -2.99615
MTMR8 myotubularin related protein 8 -2.9644
ASB12 ankyrin repeat and SOCS box containing 12 -2.9644
LOC100287225 uncharacterized LOC100287225 -2.91612
TMEM47 transmembrane protein 47 -2.88947
MEX3C mex-3 RNA binding family member C -2.87874
SMAD4 SMAD family member 4 -2.82872
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485