CRCGN017_MCF10A.TP53.M_24H:D07 Gene Set

Dataset Carcinogenome Chemical Perturbation Carcinogenicity Signatures
Category transcriptomics
Type small molecule perturbation
Description tretinoin 10.0 um perturbation at 24 h in MCF10A.TP53.M (Carcinogenome)
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Genes

48 genes differentially expressed following the CRCGN017_MCF10A.TP53.M_24H:D07 small molecule perturbation from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.

increased expression

Symbol Name Standardized Value
HOXA5 homeobox A5 6.72053
TCEA2 transcription elongation factor A (SII), 2 4.3025
KCTD5 potassium channel tetramerization domain containing 5 3.78233
DYRK3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 3.59783
RPL39L ribosomal protein L39-like 3.32653
SNAP25 synaptosomal-associated protein, 25kDa 3.23282
IL1B interleukin 1, beta 3.2025
EPN2 epsin 2 2.81596
KLHL9 kelch-like family member 9 2.78713
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 2.5271
IGHMBP2 immunoglobulin mu binding protein 2 2.46995
LBR lamin B receptor 2.423
HMOX1 heme oxygenase 1 2.36845
PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 2.33767
NRIP1 nuclear receptor interacting protein 1 2.32935
POLD4 polymerase (DNA-directed), delta 4, accessory subunit 2.27488
ALDH1A3 aldehyde dehydrogenase 1 family, member A3 2.23725
HOXA10 homeobox A10 2.21559
HOXA4 homeobox A4 2.17273
FHL2 four and a half LIM domains 2 2.13934
GNA15 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) 2.119
NSG2 neuronal vesicle trafficking associated 2 2.10255
NKX2-2 NK2 homeobox 2 2.09698
HOXA7 homeobox A7 2.07468
PCNA proliferating cell nuclear antigen 2.03198

decreased expression

Symbol Name Standardized Value
KRT14 keratin 14, type I -6.44271
NSDHL NAD(P) dependent steroid dehydrogenase-like -3.80438
MSMO1 methylsterol monooxygenase 1 -3.65996
TUBA4A tubulin, alpha 4a -3.59218
PUF60 poly-U binding splicing factor 60KDa -3.47353
S100A4 S100 calcium binding protein A4 -3.45918
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -3.3704
RGS2 regulator of G-protein signaling 2 -3.25768
UFM1 ubiquitin-fold modifier 1 -3.16595
ACOT9 acyl-CoA thioesterase 9 -2.63374
CTNND1 catenin (cadherin-associated protein), delta 1 -2.60123
DSG1 desmoglein 1 -2.5961
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase -2.55299
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -2.41107
SYNE2 spectrin repeat containing, nuclear envelope 2 -2.38188
ATP11B ATPase, class VI, type 11B -2.20994
SNCA synuclein, alpha (non A4 component of amyloid precursor) -2.19824
FSHB follicle stimulating hormone, beta polypeptide -2.16218
BASP1 brain abundant, membrane attached signal protein 1 -2.14316
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 -2.05593
POMC proopiomelanocortin -2.03327
LCE2B late cornified envelope 2B -2.01937
FLG filaggrin -2.01453