Chondroma Gene Set

Dataset DISEASES Text-mining Gene-Disease Association Evidence Scores 2025
Category disease or phenotype associations
Type disease
Description A cell type benign neoplasm that is a cartilaginous tumor encapsulated with a lobular growing pattern. (Human Disease Ontology, DOID_2602)
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Genes

114 genes co-occuring with the disease Chondroma in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.

Symbol Name Standardized Value
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein 2.893
SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 2.868
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 2.717
SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 2.674
PDGFRA platelet-derived growth factor receptor, alpha polypeptide 2.579
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 2.446
ANO1 anoctamin 1, calcium activated chloride channel 2.286
NF1 neurofibromin 1 2.233
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 2.206
SDHAF2 succinate dehydrogenase complex assembly factor 2 2.139
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 2.104
EXT1 exostosin glycosyltransferase 1 2.088
EXT2 exostosin glycosyltransferase 2 1.999
TMEM127 transmembrane protein 127 1.943
CD34 CD34 molecule 1.908
FH fumarate hydratase 1.699
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 1.689
PTH1R parathyroid hormone 1 receptor 1.684
BRAF B-Raf proto-oncogene, serine/threonine kinase 1.65
PDE11A phosphodiesterase 11A 1.634
IHH indian hedgehog 1.625
HMGA2 high mobility group AT-hook 2 1.603
RET ret proto-oncogene 1.581
MAX MYC associated factor X 1.564
EWSR1 EWS RNA-binding protein 1 1.511
TP53 tumor protein p53 1.473
IGF1R insulin-like growth factor 1 receptor 1.462
SSX1 synovial sarcoma, X breakpoint 1 1.455
SDHAF1 succinate dehydrogenase complex assembly factor 1 1.444
PRKX protein kinase, X-linked 1.436
EXTL1 exostosin-like glycosyltransferase 1 1.43
MEN1 multiple endocrine neoplasia I 1.414
PTHLH parathyroid hormone-like hormone 1.407
FGFR3 fibroblast growth factor receptor 3 1.404
EPAS1 endothelial PAS domain protein 1 1.397
EXTL2 exostosin-like glycosyltransferase 2 1.391
ERC2 ELKS/RAB6-interacting/CAST family member 2 1.388
CD99 CD99 molecule 1.387
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1.375
PDGFRB platelet-derived growth factor receptor, beta polypeptide 1.366
CD99L2 CD99 molecule-like 2 1.363
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 1.363
NTRK3 neurotrophic tyrosine kinase, receptor, type 3 1.349
COL2A1 collagen, type II, alpha 1 1.342
SOX9 SRY (sex determining region Y)-box 9 1.33
H3-3A H3.3 histone A 1.326
SYP synaptophysin 1.315
RUNX2 runt-related transcription factor 2 1.285
COL10A1 collagen, type X, alpha 1 1.284
FGFR1 fibroblast growth factor receptor 1 1.278
PDE8B phosphodiesterase 8B 1.274
GNAS GNAS complex locus 1.266
ENO2 enolase 2 (gamma, neuronal) 1.265
PRKACA protein kinase, cAMP-dependent, catalytic, alpha 1.262
KITLG KIT ligand 1.249
MTOR mechanistic target of rapamycin (serine/threonine kinase) 1.237
EGLN2 egl-9 family hypoxia-inducible factor 2 1.233
NCOA2 nuclear receptor coactivator 2 1.226
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 1.221
PRKACB protein kinase, cAMP-dependent, catalytic, beta 1.21
HEY1 hes-related family bHLH transcription factor with YRPW motif 1 1.206
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 1.205
NTRK1 neurotrophic tyrosine kinase, receptor, type 1 1.2
ACAN aggrecan 1.198
AKT1 v-akt murine thymoma viral oncogene homolog 1 1.197
CAMTA1 calmodulin binding transcription activator 1 1.192
EGLN1 egl-9 family hypoxia-inducible factor 1 1.191
PRKACG protein kinase, cAMP-dependent, catalytic, gamma 1.181
USP6 ubiquitin specific peptidase 6 1.174
MYC v-myc avian myelocytomatosis viral oncogene homolog 1.167
ETV6 ets variant 6 1.162
H3-3B H3.3 histone B 1.161
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 1.156
TBXT T-box transcription factor T 1.156
CHGA chromogranin A 1.153
FLT3 fms-related tyrosine kinase 3 1.152
EXTL3 exostosin-like glycosyltransferase 3 1.144
TLL2 tolloid-like 2 1.14
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 1.128
SSX2 synovial sarcoma, X breakpoint 2 1.123
ATRX alpha thalassemia/mental retardation syndrome X-linked 1.121
FGF4 fibroblast growth factor 4 1.12
CALD1 caldesmon 1 1.118
GFAP glial fibrillary acidic protein 1.103
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 1.101
CALCR calcitonin receptor 1.091
BCL2 B-cell CLL/lymphoma 2 1.088
FGF3 fibroblast growth factor 3 1.087
PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta 1.083
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 1.081
LPP LIM domain containing preferred translocation partner in lipoma 1.079
NR4A3 nuclear receptor subfamily 4, group A, member 3 1.077
PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 1.075
CDKN2A cyclin-dependent kinase inhibitor 2A 1.07
BMP2 bone morphogenetic protein 2 1.068
PTCH1 patched 1 1.066
NCAM1 neural cell adhesion molecule 1 1.065
B3GAT3 beta-1,3-glucuronyltransferase 3 1.056
SS18 synovial sarcoma translocation, chromosome 18 1.053
FGFR2 fibroblast growth factor receptor 2 1.048
FGF18 fibroblast growth factor 18 1.045
HOOK3 hook microtubule-tethering protein 3 1.041
CCK cholecystokinin 1.038
PECAM1 platelet/endothelial cell adhesion molecule 1 1.035
GLI1 GLI family zinc finger 1 1.034
HRAS Harvey rat sarcoma viral oncogene homolog 1.029
IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 1.022
KDM4D lysine (K)-specific demethylase 4D 1.018
PTEN phosphatase and tensin homolog 1.016
SSX4B synovial sarcoma, X breakpoint 4B 1.015
PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta 1.014
SUFU suppressor of fused homolog (Drosophila) 1.009
SSX4 synovial sarcoma, X breakpoint 4 1.009
TADA2A transcriptional adaptor 2A 1.003