Ciclopirox_NCI-H596 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ciclopirox perturbation in NCI-H596 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ciclopirox_NCI-H596 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.255347
MT2A metallothionein 2A 0.161499
AKAP12 A kinase (PRKA) anchor protein 12 0.134704
TMSB10 thymosin beta 10 0.112152
NDRG1 N-myc downstream regulated 1 0.111137
IGFBP3 insulin-like growth factor binding protein 3 0.109847
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0987228
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0924788
PTMA prothymosin, alpha 0.0878034
NF1 neurofibromin 1 0.0858935
TPT1 tumor protein, translationally-controlled 1 0.0822533
RPLP1 ribosomal protein, large, P1 0.0744756
VIM vimentin 0.0741287
RPS3 ribosomal protein S3 0.0710797
RAD51B RAD51 paralog B 0.0699315
RPL23 ribosomal protein L23 0.0666419
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0650583
RPL37A ribosomal protein L37a 0.0615387
DTNA dystrobrevin, alpha 0.0612199
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0603517
BPTF bromodomain PHD finger transcription factor 0.0601408
ZBTB20 zinc finger and BTB domain containing 20 0.057659
ENO1 enolase 1, (alpha) 0.0572726
RPS6 ribosomal protein S6 0.0551363
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0542099
TRIO trio Rho guanine nucleotide exchange factor 0.0540723
MYH9 myosin, heavy chain 9, non-muscle 0.053578
BRD2 bromodomain containing 2 0.0527937
FN1 fibronectin 1 0.0511843
JUN jun proto-oncogene 0.0505542
RUNX1 runt-related transcription factor 1 0.0498835
ASPH aspartate beta-hydroxylase 0.0496151
NKD1 naked cuticle homolog 1 (Drosophila) 0.0485988
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0469975
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0468239
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0458539
EGFR epidermal growth factor receptor 0.045638
ANKRD12 ankyrin repeat domain 12 0.0451499
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0442469
EXT1 exostosin glycosyltransferase 1 0.043762
RPL12 ribosomal protein L12 0.0433053
SBF2 SET binding factor 2 0.0428503
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0417308
PDE4D phosphodiesterase 4D, cAMP-specific 0.0413662
KMT2C lysine (K)-specific methyltransferase 2C 0.0410485
TBC1D22A TBC1 domain family, member 22A 0.0407304
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.0351301
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0343343
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0342154
VMP1 vacuole membrane protein 1 0.0331658
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0329938
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0325176
RTN4 reticulon 4 0.0323082
RAB7A RAB7A, member RAS oncogene family 0.0308813
PGK1 phosphoglycerate kinase 1 0.0307125
AHNAK AHNAK nucleoprotein 0.0298442
ERRFI1 ERBB receptor feedback inhibitor 1 0.0289963
FBXO11 F-box protein 11 0.0286888
KANSL1 KAT8 regulatory NSL complex subunit 1 0.0282118
LIMS1 LIM and senescent cell antigen-like domains 1 0.0278513
RPL37 ribosomal protein L37 0.0276574
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0274963
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0266984
PCBP2 poly(rC) binding protein 2 0.0261915
EZR ezrin 0.0259256
MYO1E myosin IE 0.02589
SYT1 synaptotagmin I 0.0237982
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0227745
MCL1 myeloid cell leukemia 1 0.0223109
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0222902
RPL19 ribosomal protein L19 0.0211188
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0205741
APP amyloid beta (A4) precursor protein 0.0201229
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0192081
SLC38A2 solute carrier family 38, member 2 0.0186794
SON SON DNA binding protein 0.0173631
ERBIN erbb2 interacting protein 0.0166085
SMAD3 SMAD family member 3 0.0164229
LMTK2 lemur tyrosine kinase 2 0.0157367
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0140629
MAML2 mastermind-like 2 (Drosophila) 0.0133037
ZNF292 zinc finger protein 292 0.0129758
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0125471
RICTOR RPTOR independent companion of MTOR, complex 2 0.012493
NCOA3 nuclear receptor coactivator 3 0.0117178
MEF2A myocyte enhancer factor 2A 0.0111544
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0107366
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0107298
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0106616
FLNB filamin B, beta 0.00987898
B2M beta-2-microglobulin 0.00981906
SLTM SAFB-like, transcription modulator 0.00936754
DOCK5 dedicator of cytokinesis 5 0.0086932
PRELID2 PRELI domain containing 2 0.00781
ZFAND3 zinc finger, AN1-type domain 3 0.00776976
ARID4B AT rich interactive domain 4B (RBP1-like) 0.00641994
NAP1L1 nucleosome assembly protein 1-like 1 0.00640864
PRKCA protein kinase C, alpha 0.00434557
TPR translocated promoter region, nuclear basket protein 0.00396828
P4HB prolyl 4-hydroxylase, beta polypeptide 0.00294723

decreased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 -0.139787
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.110047
HDLBP high density lipoprotein binding protein -0.107957
FAM13A family with sequence similarity 13, member A -0.107157
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.091322
GPC6 glypican 6 -0.089256
TFG TRK-fused gene -0.0838822
GPHN gephyrin -0.080919
LYST lysosomal trafficking regulator -0.0799977
PDE10A phosphodiesterase 10A -0.0774229
VCL vinculin -0.0747557
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0733892
GOLGA4 golgin A4 -0.0718407
ALCAM activated leukocyte cell adhesion molecule -0.0714274
POTEF POTE ankyrin domain family, member F -0.0713374
HOOK2 hook microtubule-tethering protein 2 -0.0709051
PDE8A phosphodiesterase 8A -0.0703896
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0694786
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0694599
CALD1 caldesmon 1 -0.0691657
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme -0.0674143
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0670406
ARB2A ARB2 cotranscriptional regulator A -0.0654539
GCLC glutamate-cysteine ligase, catalytic subunit -0.064679
MBNL2 muscleblind-like splicing regulator 2 -0.0638911
ANXA2 annexin A2 -0.0624588
TJP1 tight junction protein 1 -0.0620797
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.060135
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0584468
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0577058
FAT1 FAT atypical cadherin 1 -0.055568
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.055302
ANKRD11 ankyrin repeat domain 11 -0.0546674
GARS1 glycyl-tRNA synthetase 1 -0.0536529
SND1 staphylococcal nuclease and tudor domain containing 1 -0.0532353
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0515408
FTH1 ferritin, heavy polypeptide 1 -0.0508807
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0507876
EEF2 eukaryotic translation elongation factor 2 -0.0500194
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0499409
STC1 stanniocalcin 1 -0.0489903
RAP1B RAP1B, member of RAS oncogene family -0.0476749
UBE2H ubiquitin-conjugating enzyme E2H -0.0476719
RPS16 ribosomal protein S16 -0.047657
FNDC3A fibronectin type III domain containing 3A -0.0470944
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0453935
PRRC2C proline-rich coiled-coil 2C -0.0451069
INHBA inhibin, beta A -0.0450153
RPL35A ribosomal protein L35a -0.043985
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0438725
CANX calnexin -0.0433831
FOXP1 forkhead box P1 -0.0433631
FMNL2 formin-like 2 -0.0432887
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0423763
DSCAM Down syndrome cell adhesion molecule -0.0413748
JMJD1C jumonji domain containing 1C -0.0410032
DOCK4 dedicator of cytokinesis 4 -0.0407025
DSPP dentin sialophosphoprotein -0.0406862
SPAG9 sperm associated antigen 9 -0.0404109
PDLIM5 PDZ and LIM domain 5 -0.0402856
FTL ferritin, light polypeptide -0.0397501
KMT2E lysine (K)-specific methyltransferase 2E -0.0391149
LMO7 LIM domain 7 -0.038742
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0387184
SEC31A SEC31 homolog A (S. cerevisiae) -0.0371231
S100A10 S100 calcium binding protein A10 -0.0359132
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0358308
BIRC6 baculoviral IAP repeat containing 6 -0.0357939
AKAP9 A kinase (PRKA) anchor protein 9 -0.035305
ITGA6 integrin, alpha 6 -0.0347667
TBC1D5 TBC1 domain family, member 5 -0.0343204
CDK6 cyclin-dependent kinase 6 -0.0309006
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0295318
ELL2 elongation factor, RNA polymerase II, 2 -0.0286015
NIPBL Nipped-B homolog (Drosophila) -0.0283057
PSD3 pleckstrin and Sec7 domain containing 3 -0.0276117
IGF2 insulin-like growth factor 2 -0.0270926
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0269078
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0267339
HMGA2 high mobility group AT-hook 2 -0.0254559
PKM pyruvate kinase, muscle -0.0254552
CCNI cyclin I -0.0254235
OGA O-GlcNAcase -0.025376
SQSTM1 sequestosome 1 -0.0238192
CAMTA1 calmodulin binding transcription activator 1 -0.0222015
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0218694
RBM39 RNA binding motif protein 39 -0.0212978
ITCH itchy E3 ubiquitin protein ligase -0.0212365
MYO10 myosin X -0.0211797
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0204551
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0191278
USP34 ubiquitin specific peptidase 34 -0.0186975
AFF4 AF4/FMR2 family, member 4 -0.0176994
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0172853
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0168888
SEPTIN9 septin 9 -0.0165353
H3-3B H3.3 histone B -0.0161608
DST dystonin -0.0143616
SMYD3 SET and MYND domain containing 3 -0.0137389
MACF1 microtubule-actin crosslinking factor 1 -0.013245