Ciclopirox_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ciclopirox perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ciclopirox_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.264953
VIM vimentin 0.111616
IGFBP3 insulin-like growth factor binding protein 3 0.0766671
HILPDA hypoxia inducible lipid droplet-associated 0.0761315
CD44 CD44 molecule (Indian blood group) 0.0755082
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0633505
LDHA lactate dehydrogenase A 0.0625445
LMO7 LIM domain 7 0.0601883
ANKRD28 ankyrin repeat domain 28 0.0600491
MT2A metallothionein 2A 0.0598609
AKAP13 A kinase (PRKA) anchor protein 13 0.0567286
PTMA prothymosin, alpha 0.0550714
BASP1 brain abundant, membrane attached signal protein 1 0.0528531
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0516949
ANKHD1 ankyrin repeat and KH domain containing 1 0.0500892
B2M beta-2-microglobulin 0.0486565
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0485027
HDAC9 histone deacetylase 9 0.0461023
H3-3B H3.3 histone B 0.0443716
TPX2 TPX2, microtubule-associated 0.0433762
FMNL2 formin-like 2 0.0425286
NAV2 neuron navigator 2 0.042138
PCCA propionyl CoA carboxylase, alpha polypeptide 0.0407116
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 0.0404547
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.040164
TAOK3 TAO kinase 3 0.0397759
RAP1B RAP1B, member of RAS oncogene family 0.0396356
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.0394092
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0390602
RB1CC1 RB1-inducible coiled-coil 1 0.0376107
PHF14 PHD finger protein 14 0.0368176
KDM2A lysine (K)-specific demethylase 2A 0.0366814
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0360954
TMSB10 thymosin beta 10 0.0360487
TTC17 tetratricopeptide repeat domain 17 0.0359742
PCNX1 pecanex 1 0.0357736
WSB1 WD repeat and SOCS box containing 1 0.0355417
MAP2K5 mitogen-activated protein kinase kinase 5 0.0355291
PDE4D phosphodiesterase 4D, cAMP-specific 0.0351142
DSCAM Down syndrome cell adhesion molecule 0.0350743
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0350472
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.034578
ESYT2 extended synaptotagmin-like protein 2 0.034484
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0342349
RIGI RNA sensor RIG-I 0.0338444
RBM39 RNA binding motif protein 39 0.0336312
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0335511
BBX bobby sox homolog (Drosophila) 0.0332652
RPL15 ribosomal protein L15 0.0332607
DNER delta/notch-like EGF repeat containing 0.0329694
KDM5A lysine (K)-specific demethylase 5A 0.0324369
PBX3 pre-B-cell leukemia homeobox 3 0.0322267
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0321564
ATXN1 ataxin 1 0.032057
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0318714
CELF1 CUGBP, Elav-like family member 1 0.031312
TRPC1 transient receptor potential cation channel, subfamily C, member 1 0.0306055
MAP3K20 mitogen-activated protein kinase kinase kinase 20 0.0304238
CENPF centromere protein F, 350/400kDa 0.0302559
CEP57 centrosomal protein 57kDa 0.0301255
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0298306
EFNA5 ephrin-A5 0.0297377
ARHGAP26 Rho GTPase activating protein 26 0.029662
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 0.0296305
SLMAP sarcolemma associated protein 0.0295651
NAP1L1 nucleosome assembly protein 1-like 1 0.0294231
R3HDM1 R3H domain containing 1 0.0293353
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0292664
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0292272
KIF5B kinesin family member 5B 0.0291431
ATRN attractin 0.0291138
AKAP9 A kinase (PRKA) anchor protein 9 0.028837
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) 0.0286979
TIAM1 T-cell lymphoma invasion and metastasis 1 0.0284553
VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) 0.0284177
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 0.0283677
SATB2 SATB homeobox 2 0.0283316
ANLN anillin, actin binding protein 0.0282977
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0281098
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0281009
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0280292
OXSR1 oxidative stress responsive 1 0.0278874
RPS25 ribosomal protein S25 0.0278473
DEK DEK proto-oncogene 0.0273758
RPS12 ribosomal protein S12 0.0272457
DIAPH1 diaphanous-related formin 1 0.0270088
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0269908
CENPE centromere protein E, 312kDa 0.0268642
SCAF11 SR-related CTD-associated factor 11 0.0267145
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0266879
FBXL17 F-box and leucine-rich repeat protein 17 0.0264697
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0264587
TBC1D5 TBC1 domain family, member 5 0.0263585
ARL15 ADP-ribosylation factor-like 15 0.0260217
PXDN peroxidasin 0.0257777
S100A10 S100 calcium binding protein A10 0.0257739
RPL8 ribosomal protein L8 0.0256845
ATXN2 ataxin 2 0.0256281
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0254277
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0253162

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.131884
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0544272
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0543312
SNX14 sorting nexin 14 -0.0508523
MYOF myoferlin -0.0498771
PRR16 proline rich 16 -0.0471505
AHNAK AHNAK nucleoprotein -0.0406034
NCOA6 nuclear receptor coactivator 6 -0.0378303
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0377857
BIRC6 baculoviral IAP repeat containing 6 -0.0375326
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0363895
TPT1 tumor protein, translationally-controlled 1 -0.0359951
FUS FUS RNA binding protein -0.0359515
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa -0.0355953
IARS1 isoleucyl-tRNA synthetase 1 -0.0354149
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0351919
INTS6 integrator complex subunit 6 -0.0349886
ANO6 anoctamin 6 -0.0343594
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0335883
DENND1A DENN/MADD domain containing 1A -0.0330736
FER fer (fps/fes related) tyrosine kinase -0.0321875
LOC112694756 uncharaterized LOC112694756 -0.0320421
SEC31A SEC31 homolog A (S. cerevisiae) -0.0314362
EVI5 ecotropic viral integration site 5 -0.0308031
PCED1B PC-esterase domain containing 1B -0.030334
SLC38A2 solute carrier family 38, member 2 -0.0300133
SPDYA speedy/RINGO cell cycle regulator family member A -0.0292204
WNK1 WNK lysine deficient protein kinase 1 -0.0291502
ZBTB20 zinc finger and BTB domain containing 20 -0.028613
ZNF638 zinc finger protein 638 -0.028209
PRELID2 PRELI domain containing 2 -0.0280901
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0270705
AEBP2 AE binding protein 2 -0.026933
RPL34 ribosomal protein L34 -0.0268965
PLEK2 pleckstrin 2 -0.026874
ABR active BCR-related -0.0265487
TRIO trio Rho guanine nucleotide exchange factor -0.0262414
ERC1 ELKS/RAB6-interacting/CAST family member 1 -0.026231
FBXO11 F-box protein 11 -0.0255396
ANKRD11 ankyrin repeat domain 11 -0.0251793
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0249224
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0247293
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0242188
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0241702
NUP98 nucleoporin 98kDa -0.0240376
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0240193
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0237729
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0237729
GOLGA3 golgin A3 -0.0236958
COLEC11 collectin sub-family member 11 -0.0235983
NR4A3 nuclear receptor subfamily 4, group A, member 3 -0.0235784
DNAAF9 dynein axonemal assembly factor 9 -0.0235641
MSN moesin -0.0235268
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0234472
GPC5 glypican 5 -0.0233203
TARS3 threonyl-tRNA synthetase 3 -0.023226
GOLGA4 golgin A4 -0.0229395
COL5A1 collagen, type V, alpha 1 -0.0224041
NABP1 nucleic acid binding protein 1 -0.0223421
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0221133
SEC24A SEC24 family member A -0.0219757
SMIM44 small integral membrane protein 44 -0.0218975
TPM4 tropomyosin 4 -0.0217614
DTNB dystrobrevin, beta -0.0217046
CLASP1 cytoplasmic linker associated protein 1 -0.0215436
EGFR epidermal growth factor receptor -0.0213575
EIF1 eukaryotic translation initiation factor 1 -0.0213358
INSIG2 insulin induced gene 2 -0.0211932
MFSD4B major facilitator superfamily domain containing 4B -0.0211157
ZBTB10 zinc finger and BTB domain containing 10 -0.0210611
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0209195
FBXL2 F-box and leucine-rich repeat protein 2 -0.0208015
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like -0.0206842
NRG1 neuregulin 1 -0.0206096
ZFYVE28 zinc finger, FYVE domain containing 28 -0.0204804
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0203441
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.0203423
THBS1 thrombospondin 1 -0.0200912
FTH1 ferritin, heavy polypeptide 1 -0.0200449
SHTN1 shootin 1 -0.0199828
PDIA4 protein disulfide isomerase family A, member 4 -0.0199325
WDR36 WD repeat domain 36 -0.0199292
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0199044
EGLN1 egl-9 family hypoxia-inducible factor 1 -0.0196098
ZFAND3 zinc finger, AN1-type domain 3 -0.0195342
CLIP2 CAP-GLY domain containing linker protein 2 -0.0194296
CANX calnexin -0.0193035
GLRX glutaredoxin (thioltransferase) -0.0192649
PRRC1 proline-rich coiled-coil 1 -0.0191984
SYAP1 synapse associated protein 1 -0.0191262
LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3 -0.0189633
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0189572
CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 -0.0189515
RAI14 retinoic acid induced 14 -0.0189419
KLF7 Kruppel-like factor 7 (ubiquitous) -0.0188784
STAU1 staufen double-stranded RNA binding protein 1 -0.0188225
ARID3B AT rich interactive domain 3B (BRIGHT-like) -0.018702
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0186861
LDLR low density lipoprotein receptor -0.0186613
ACTR3 ARP3 actin-related protein 3 homolog (yeast) -0.0185528