Clofarabine_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Clofarabine perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Clofarabine_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.103747
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0978296
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0928277
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0820603
PTMA prothymosin, alpha 0.0749408
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0735503
TPM3 tropomyosin 3 0.0701981
HSPA8 heat shock 70kDa protein 8 0.0643345
RPS3 ribosomal protein S3 0.0632556
TXNRD1 thioredoxin reductase 1 0.0566898
RPS2 ribosomal protein S2 0.0505549
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0502154
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0487673
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0479666
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0463951
ERRFI1 ERBB receptor feedback inhibitor 1 0.0459896
RPS6 ribosomal protein S6 0.0442612
RPL4 ribosomal protein L4 0.0435143
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0403195
NAMPT nicotinamide phosphoribosyltransferase 0.040025
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0399917
DGKD diacylglycerol kinase, delta 130kDa 0.0391347
WDR43 WD repeat domain 43 0.0375012
CANX calnexin 0.0345814
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0343742
PDIA6 protein disulfide isomerase family A, member 6 0.0342919
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0342526
MKI67 marker of proliferation Ki-67 0.0337019
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 0.0336031
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0335984
TFPI2 tissue factor pathway inhibitor 2 0.0334392
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0326989
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0319186
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0318629
KIF5B kinesin family member 5B 0.0311028
EEF1G eukaryotic translation elongation factor 1 gamma 0.0310464
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0309446
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0307654
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0305782
SFTPA2 surfactant protein A2 0.0305105
YBX1 Y box binding protein 1 0.0303671
MYH9 myosin, heavy chain 9, non-muscle 0.0301763
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0299447
CHN1 chimerin 1 0.0296911
CAVIN1 caveolae associated protein 1 0.0295477
CXCL8 chemokine (C-X-C motif) ligand 8 0.0292449
YBX3 Y box binding protein 3 0.0288728
WBP11 WW domain binding protein 11 0.0287734
TPD52 tumor protein D52 0.0286129
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0285468
HDGF hepatoma-derived growth factor 0.0276553
PNN pinin, desmosome associated protein 0.0275846
SET SET nuclear proto-oncogene 0.0275539
ANXA1 annexin A1 0.0272607
BHLHE40 basic helix-loop-helix family, member e40 0.0271631
BCLAF1 BCL2-associated transcription factor 1 0.0271119
RTN4 reticulon 4 0.0267884
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0264613
KLF6 Kruppel-like factor 6 0.0263635
YME1L1 YME1-like 1 ATPase 0.0260685
HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit 0.0260511
ANLN anillin, actin binding protein 0.0258964
CENPF centromere protein F, 350/400kDa 0.0257347
EIF3A eukaryotic translation initiation factor 3, subunit A 0.025514
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.025442
BZW1 basic leucine zipper and W2 domains 1 0.0253527
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0251262
SRGN serglycin 0.0251221
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.025062
RPL26 ribosomal protein L26 0.0249927
TMA7 translation machinery associated 7 homolog (S. cerevisiae) 0.0246748
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0245838
CSDE1 cold shock domain containing E1, RNA-binding 0.0244652
RAD21 RAD21 homolog (S. pombe) 0.0242182
RPS12 ribosomal protein S12 0.0241005
RPL14 ribosomal protein L14 0.0239678
TMSB4X thymosin beta 4, X-linked 0.0231046
GOLT1B golgi transport 1B 0.0231037
PAWR PRKC, apoptosis, WT1, regulator 0.0224269
KTN1 kinectin 1 (kinesin receptor) 0.022308
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.0222514
BRIX1 BRX1, biogenesis of ribosomes 0.0222126
IWS1 IWS1 homolog (S. cerevisiae) 0.0220853
ZNF292 zinc finger protein 292 0.0217566
RBM8A RNA binding motif protein 8A 0.0216724
ASPH aspartate beta-hydroxylase 0.0215139
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0215007
CASC3 cancer susceptibility candidate 3 0.0212839
USP3 ubiquitin specific peptidase 3 0.0210145
AGFG1 ArfGAP with FG repeats 1 0.0209839
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0209774
JAK1 Janus kinase 1 0.0206772
KDM3A lysine (K)-specific demethylase 3A 0.0204743
RPS7 ribosomal protein S7 0.0202396
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0202348
FGB fibrinogen beta chain 0.0201699
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0201627
ARPP19 cAMP-regulated phosphoprotein, 19kDa 0.0200424
TCEA1 transcription elongation factor A (SII), 1 0.0199952
TMED9 transmembrane emp24 protein transport domain containing 9 0.019902

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.277788
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.190666
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.174593
PDE4D phosphodiesterase 4D, cAMP-specific -0.14173
THSD4 thrombospondin, type I, domain containing 4 -0.124508
FTL ferritin, light polypeptide -0.110773
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.108246
TMSB10 thymosin beta 10 -0.100947
PARD3 par-3 family cell polarity regulator -0.0795937
DOCK4 dedicator of cytokinesis 4 -0.0740569
IGF2 insulin-like growth factor 2 -0.0679478
CMIP c-Maf inducing protein -0.0675042
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0654146
USP34 ubiquitin specific peptidase 34 -0.0639629
SAMD4A sterile alpha motif domain containing 4A -0.0625173
SMOC1 SPARC related modular calcium binding 1 -0.0614037
VIM vimentin -0.0607294
FNDC3B fibronectin type III domain containing 3B -0.0604796
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.058108
ARHGAP26 Rho GTPase activating protein 26 -0.0560765
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0558441
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0529862
SVIL supervillin -0.0526389
IGFBP3 insulin-like growth factor binding protein 3 -0.05244
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0521825
EGFR epidermal growth factor receptor -0.0513943
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0504998
RPLP1 ribosomal protein, large, P1 -0.0497633
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0494604
GRAMD1B GRAM domain containing 1B -0.0490985
ZFAND3 zinc finger, AN1-type domain 3 -0.0490334
MAML3 mastermind-like 3 (Drosophila) -0.0480137
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0454047
NEGR1 neuronal growth regulator 1 -0.0448139
KYNU kynureninase -0.0443556
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0432172
GLS2 glutaminase 2 (liver, mitochondrial) -0.0425583
PM20D1 peptidase M20 domain containing 1 -0.0415919
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0389396
BASP1 brain abundant, membrane attached signal protein 1 -0.0381357
WWOX WW domain containing oxidoreductase -0.0380673
DOCK5 dedicator of cytokinesis 5 -0.0379393
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0375243
MCL1 myeloid cell leukemia 1 -0.0374725
ACTG1 actin gamma 1 -0.0370821
ZBTB20 zinc finger and BTB domain containing 20 -0.0359595
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0358769
NF1 neurofibromin 1 -0.0356448
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0349238
PTPRM protein tyrosine phosphatase, receptor type, M -0.0348951
GLIS3 GLIS family zinc finger 3 -0.0348797
WAC WW domain containing adaptor with coiled-coil -0.0346631
BICC1 BicC family RNA binding protein 1 -0.0340643
RAD51B RAD51 paralog B -0.0336579
FTH1 ferritin, heavy polypeptide 1 -0.0334926
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0323938
EGR1 early growth response 1 -0.0319205
RAB7A RAB7A, member RAS oncogene family -0.0318137
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0310358
STRN3 striatin, calmodulin binding protein 3 -0.0307301
DSCAM Down syndrome cell adhesion molecule -0.0305849
ATXN1 ataxin 1 -0.0303106
EXT1 exostosin glycosyltransferase 1 -0.0302833
CUX1 cut-like homeobox 1 -0.0301488
ARID1B AT rich interactive domain 1B (SWI1-like) -0.0299378
STC1 stanniocalcin 1 -0.029688
SLC35F3 solute carrier family 35, member F3 -0.0292149
PTPRG protein tyrosine phosphatase, receptor type, G -0.0291615
EHBP1 EH domain binding protein 1 -0.0287449
RPS20 ribosomal protein S20 -0.0286341
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0285487
CREBBP CREB binding protein -0.0284858
IER3 immediate early response 3 -0.0284286
INTS6 integrator complex subunit 6 -0.0284139
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0284053
COPA coatomer protein complex, subunit alpha -0.0282704
CDK13 cyclin-dependent kinase 13 -0.0280894
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0278836
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0278505
BRD2 bromodomain containing 2 -0.0277352
TRIO trio Rho guanine nucleotide exchange factor -0.0277257
EXOC6B exocyst complex component 6B -0.0275206
FBXO11 F-box protein 11 -0.0273105
DST dystonin -0.027213
RPS16 ribosomal protein S16 -0.0271769
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0271327
PTK2 protein tyrosine kinase 2 -0.0270821
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0270573
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0270111
RASAL2 RAS protein activator like 2 -0.0269762
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0265943
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.026516
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0264366
PFN1 profilin 1 -0.0260588
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0260161
NBEAL1 neurobeachin-like 1 -0.0256094
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0255822
NRG1 neuregulin 1 -0.0255797
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) -0.0254896
MED13 mediator complex subunit 13 -0.0253083