Clonidine (hydrochloride)_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Clonidine (hydrochloride) perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Clonidine (hydrochloride)_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FMN1 formin 1 0.155031
FNDC3B fibronectin type III domain containing 3B 0.147164
MYH9 myosin, heavy chain 9, non-muscle 0.0774039
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0755481
PLEC plectin 0.0750424
ANKRD28 ankyrin repeat domain 28 0.0711549
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0696263
FRMD4A FERM domain containing 4A 0.0666128
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0660445
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0655121
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0638446
MSN moesin 0.0634751
DST dystonin 0.0618085
WWTR1 WW domain containing transcription regulator 1 0.0565911
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0561215
FMNL2 formin-like 2 0.0523854
OSBPL10 oxysterol binding protein-like 10 0.0520611
RUNX1 runt-related transcription factor 1 0.0497363
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0478834
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0462119
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0422994
NAMPT nicotinamide phosphoribosyltransferase 0.0421817
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0416698
RNF145 ring finger protein 145 0.0409894
ACTN1 actinin, alpha 1 0.0408421
AMOTL1 angiomotin like 1 0.0407626
FLNA filamin A, alpha 0.0404936
AFDN afadin, adherens junction formation factor 0.0400051
LINGO2 leucine rich repeat and Ig domain containing 2 0.0367879
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 0.0361742
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0361298
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0359529
ZEB2 zinc finger E-box binding homeobox 2 0.0358531
CHD1 chromodomain helicase DNA binding protein 1 0.0356777
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0354529
HDAC9 histone deacetylase 9 0.0350965
FRMD5 FERM domain containing 5 0.0350574
UBASH3B ubiquitin associated and SH3 domain containing B 0.0348754
NAV2 neuron navigator 2 0.0346886
AKAP13 A kinase (PRKA) anchor protein 13 0.0338997
ZFAND3 zinc finger, AN1-type domain 3 0.0330808
EP300 E1A binding protein p300 0.0327112
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0324867
TRIP12 thyroid hormone receptor interactor 12 0.0320806
CLIP4 CAP-GLY domain containing linker protein family, member 4 0.0320289
TRIO trio Rho guanine nucleotide exchange factor 0.0320105
FN1 fibronectin 1 0.031646
RPL3 ribosomal protein L3 0.0314372
QKI QKI, KH domain containing, RNA binding 0.0313522
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0313181
SPAG9 sperm associated antigen 9 0.0311257
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0308851
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0307013
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0306615
ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 0.0306224
CENPF centromere protein F, 350/400kDa 0.0304056
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0303192
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0298527
CDK6 cyclin-dependent kinase 6 0.0295974
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0293363
ANLN anillin, actin binding protein 0.0292261
TPM3 tropomyosin 3 0.0292076
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0291161
ATP13A3 ATPase type 13A3 0.0288644
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.0288571
SFPQ splicing factor proline/glutamine-rich 0.028841
ACTN4 actinin, alpha 4 0.0288049
AHNAK AHNAK nucleoprotein 0.0284007
DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 0.0281996
OGA O-GlcNAcase 0.0281798
MELTF melanotransferrin 0.0280475
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0280272
SPRED1 sprouty-related, EVH1 domain containing 1 0.0277973
ZBTB38 zinc finger and BTB domain containing 38 0.0275626
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.027509
RNF213 ring finger protein 213 0.0271552
ATXN1 ataxin 1 0.0270817
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.026918
CORO1C coronin, actin binding protein, 1C 0.0264584
ETV6 ets variant 6 0.026293
AKAP12 A kinase (PRKA) anchor protein 12 0.0259446
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0259132
CTTN cortactin 0.0254006
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0253031
CEMIP2 cell migration inducing hyaluronidase 2 0.0248487
OPHN1 oligophrenin 1 0.0246033
ZFAND6 zinc finger, AN1-type domain 6 0.0245481
MCL1 myeloid cell leukemia 1 0.0243647
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.024124
HELZ helicase with zinc finger 0.0241117
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0240672
ANKRD11 ankyrin repeat domain 11 0.0239805
OXSR1 oxidative stress responsive 1 0.0237287
KYNU kynureninase 0.0236205
LEF1 lymphoid enhancer-binding factor 1 0.0234877
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0233959
SMAD3 SMAD family member 3 0.0232736
MAML3 mastermind-like 3 (Drosophila) 0.0232666
HMG20B high mobility group 20B 0.0232259
ADAM17 ADAM metallopeptidase domain 17 0.0229662

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.30416
NLGN1 neuroligin 1 -0.167875
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.156846
MT2A metallothionein 2A -0.121541
LSAMP limbic system-associated membrane protein -0.0998886
RPL35A ribosomal protein L35a -0.0855499
RPLP1 ribosomal protein, large, P1 -0.0840076
TMSB10 thymosin beta 10 -0.0781641
RPS6 ribosomal protein S6 -0.0704353
FTL ferritin, light polypeptide -0.0699164
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0688872
NRG3 neuregulin 3 -0.062358
VDAC1 voltage-dependent anion channel 1 -0.0562199
PTMA prothymosin, alpha -0.0527348
RPS8 ribosomal protein S8 -0.0512488
RPS13 ribosomal protein S13 -0.0510844
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0491602
SQSTM1 sequestosome 1 -0.0485072
RPS3 ribosomal protein S3 -0.0472925
RPLP2 ribosomal protein, large, P2 -0.0465151
RPL37A ribosomal protein L37a -0.045667
ZBTB20 zinc finger and BTB domain containing 20 -0.0437921
NDRG1 N-myc downstream regulated 1 -0.0433651
RPS12 ribosomal protein S12 -0.0408686
RPL31 ribosomal protein L31 -0.0408358
FHIT fragile histidine triad -0.0407157
RACK1 receptor for activated C kinase 1 -0.0406525
TPT1 tumor protein, translationally-controlled 1 -0.0404435
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0395831
RPS21 ribosomal protein S21 -0.0392646
RPL12 ribosomal protein L12 -0.0392126
HLA-B major histocompatibility complex, class I, B -0.039201
RPL34 ribosomal protein L34 -0.0387022
RPS29 ribosomal protein S29 -0.0384024
ENO1 enolase 1, (alpha) -0.0373029
RPS24 ribosomal protein S24 -0.0369677
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0366112
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0365359
RPL9 ribosomal protein L9 -0.0364296
RPL5 ribosomal protein L5 -0.0357415
RPL38 ribosomal protein L38 -0.0355052
PRAME preferentially expressed antigen in melanoma -0.0353245
RPS23 ribosomal protein S23 -0.0350527
RPS14 ribosomal protein S14 -0.0341946
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0341267
RAB7A RAB7A, member RAS oncogene family -0.0339829
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0339275
GOLGA4 golgin A4 -0.0331585
CADM1 cell adhesion molecule 1 -0.0323605
KPNB1 karyopherin (importin) beta 1 -0.0322961
ENO2 enolase 2 (gamma, neuronal) -0.0317414
LITAF lipopolysaccharide-induced TNF factor -0.0311376
HMGA1 high mobility group AT-hook 1 -0.0305023
RPL37 ribosomal protein L37 -0.0303527
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0301963
NAP1L1 nucleosome assembly protein 1-like 1 -0.0297224
TBCA tubulin folding cofactor A -0.0294819
RPL36A ribosomal protein L36a -0.029279
S100A9 S100 calcium binding protein A9 -0.0292766
IFI6 interferon, alpha-inducible protein 6 -0.028958
RPL23 ribosomal protein L23 -0.0289412
RPL11 ribosomal protein L11 -0.0282572
EIF1 eukaryotic translation initiation factor 1 -0.0280166
RPS16 ribosomal protein S16 -0.0277204
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0276333
RPS27A ribosomal protein S27a -0.0271717
RPL32 ribosomal protein L32 -0.0270766
POLR2F polymerase (RNA) II (DNA directed) polypeptide F -0.0269827
RPL30 ribosomal protein L30 -0.0269719
RPL28 ribosomal protein L28 -0.0267517
CTSD cathepsin D -0.0260428
SLC38A1 solute carrier family 38, member 1 -0.0258025
RPL36 ribosomal protein L36 -0.0257562
SOX10 SRY (sex determining region Y)-box 10 -0.0257214
TOB2 transducer of ERBB2, 2 -0.0255311
ACTG1 actin gamma 1 -0.025477
CDH13 cadherin 13 -0.024941
RPL27 ribosomal protein L27 -0.02489
APOD apolipoprotein D -0.0246198
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 -0.0243333
RPL26 ribosomal protein L26 -0.0242969
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0242241
RPL19 ribosomal protein L19 -0.0241333
SLC39A11 solute carrier family 39, member 11 -0.0240928
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0237913
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 -0.0235319
BCAS3 breast carcinoma amplified sequence 3 -0.0233123
RPL13A ribosomal protein L13a -0.0232571
AKAP9 A kinase (PRKA) anchor protein 9 -0.0231098
RPS19 ribosomal protein S19 -0.0223288
SPDYA speedy/RINGO cell cycle regulator family member A -0.0219322
HSPB1 heat shock 27kDa protein 1 -0.021756
RPS15 ribosomal protein S15 -0.0215983
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0215831
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0214626
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0214087
RPL27A ribosomal protein L27a -0.0211791
ENTHD1 ENTH domain containing 1 -0.0209437
MT1X metallothionein 1X -0.020882
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0208379