Cobimetinib_NCI-H1792 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cobimetinib perturbation in NCI-H1792 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cobimetinib_NCI-H1792 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FAM13A family with sequence similarity 13, member A 0.0935025
SOD2 superoxide dismutase 2, mitochondrial 0.0806928
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0587187
ENO1 enolase 1, (alpha) 0.0557329
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0550728
RPS12 ribosomal protein S12 0.0549528
PTPRR protein tyrosine phosphatase, receptor type, R 0.0546605
KYNU kynureninase 0.0513349
MYOF myoferlin 0.048433
RBMS3 RNA binding motif, single stranded interacting protein 3 0.0465537
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0459856
ZNF292 zinc finger protein 292 0.0453561
TRIO trio Rho guanine nucleotide exchange factor 0.0437217
ZBTB20 zinc finger and BTB domain containing 20 0.0429882
DDIT4 DNA-damage-inducible transcript 4 0.0420706
OGA O-GlcNAcase 0.0416633
PTGR1 prostaglandin reductase 1 0.0402959
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.0394353
EXOC4 exocyst complex component 4 0.0383188
PDK3 pyruvate dehydrogenase kinase, isozyme 3 0.0366593
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0344033
B2M beta-2-microglobulin 0.0343065
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0341432
EIF1 eukaryotic translation initiation factor 1 0.0333847
GBP2 guanylate binding protein 2, interferon-inducible 0.0332839
RARB retinoic acid receptor, beta 0.0326217
ADM adrenomedullin 0.0324292
LIMCH1 LIM and calponin homology domains 1 0.0320012
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0317879
MXI1 MAX interactor 1, dimerization protein 0.0316342
NGLY1 N-glycanase 1 0.0314614
IFIH1 interferon induced with helicase C domain 1 0.0309637
USP34 ubiquitin specific peptidase 34 0.0307797
RPS6 ribosomal protein S6 0.030342
TBC1D5 TBC1 domain family, member 5 0.0302738
DLG1 discs, large homolog 1 (Drosophila) 0.0282154
RPL37A ribosomal protein L37a 0.02814
JAK1 Janus kinase 1 0.0278685
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0277705
KDM3A lysine (K)-specific demethylase 3A 0.0277548
CFB complement factor B 0.0275531
ZNF638 zinc finger protein 638 0.0275168
DIO2 deiodinase, iodothyronine, type II 0.0274098
RPS8 ribosomal protein S8 0.0268347
TXNRD1 thioredoxin reductase 1 0.0268135
DPYSL3 dihydropyrimidinase-like 3 0.0268093
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0266063
SPIDR scaffolding protein involved in DNA repair 0.0265045
RPL23 ribosomal protein L23 0.0262475
RPS3 ribosomal protein S3 0.0260036
LRMDA leucine rich melanocyte differentiation associated 0.0259763
UGP2 UDP-glucose pyrophosphorylase 2 0.0254701
REL v-rel avian reticuloendotheliosis viral oncogene homolog 0.0252703
PRELID2 PRELI domain containing 2 0.0252054
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0251659
TAS2R14 taste receptor, type 2, member 14 0.0251148
WTAP Wilms tumor 1 associated protein 0.024549
RAD51B RAD51 paralog B 0.0245151
YEATS2 YEATS domain containing 2 0.0244646
RPL34 ribosomal protein L34 0.0238764
RNF213 ring finger protein 213 0.0238508
NIPBL Nipped-B homolog (Drosophila) 0.0237929
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0234139
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0232964
BHLHE40 basic helix-loop-helix family, member e40 0.0231809
CA12 carbonic anhydrase XII 0.0230451
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 0.0228147
PHF21A PHD finger protein 21A 0.0227882
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0225742
SAMD4A sterile alpha motif domain containing 4A 0.0225252
ANK2 ankyrin 2, neuronal 0.0223034
FBXO32 F-box protein 32 0.0221496
ARRDC3 arrestin domain containing 3 0.0221063
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 0.0220383
TMEM123 transmembrane protein 123 0.021829
TGFBI transforming growth factor, beta-induced, 68kDa 0.0217894
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.0217449
RPL18 ribosomal protein L18 0.0217054
RPL12 ribosomal protein L12 0.0215603
BABAM2 BRISC and BRCA1 A complex member 2 0.0215369
RPS2 ribosomal protein S2 0.0215043
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0207929
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0207451
RPS29 ribosomal protein S29 0.0207017
EYA4 EYA transcriptional coactivator and phosphatase 4 0.0206867
NBAS neuroblastoma amplified sequence 0.0206501
BASP1 brain abundant, membrane attached signal protein 1 0.020641
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.020491
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 0.0204076
PNISR PNN-interacting serine/arginine-rich protein 0.020327
C15ORF48 chromosome 15 open reading frame 48 0.0201118
BHLHE41 basic helix-loop-helix family, member e41 0.0200018
GYS1 glycogen synthase 1 (muscle) 0.0197582
USP37 ubiquitin specific peptidase 37 0.0195934
LIFR leukemia inhibitory factor receptor alpha 0.0195824
CRYBG3 beta-gamma crystallin domain containing 3 0.0194751
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.019329
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0192216
SKAP2 src kinase associated phosphoprotein 2 0.019204
ANGPTL4 angiopoietin-like 4 0.0190494

decreased expression

Symbol Name Standardized Value
CD44 CD44 molecule (Indian blood group) -0.206282
CXCL8 chemokine (C-X-C motif) ligand 8 -0.171461
EFNA5 ephrin-A5 -0.12507
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.124993
FN1 fibronectin 1 -0.122042
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.120936
HMGA2 high mobility group AT-hook 2 -0.120794
VIM vimentin -0.120649
STC1 stanniocalcin 1 -0.111786
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.104302
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.102653
PDE4D phosphodiesterase 4D, cAMP-specific -0.100859
CDH13 cadherin 13 -0.0981177
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0936242
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0898886
CAMK1D calcium/calmodulin-dependent protein kinase ID -0.0880953
LOX lysyl oxidase -0.0867544
GRB10 growth factor receptor-bound protein 10 -0.08611
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0830496
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0799687
AKAP13 A kinase (PRKA) anchor protein 13 -0.0763904
NAMPT nicotinamide phosphoribosyltransferase -0.0752594
NRP1 neuropilin 1 -0.0725222
EGR1 early growth response 1 -0.0683027
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.0639029
MAP1B microtubule-associated protein 1B -0.0633196
FTH1 ferritin, heavy polypeptide 1 -0.0633052
FNDC3B fibronectin type III domain containing 3B -0.0615458
RAB27B RAB27B, member RAS oncogene family -0.0614351
MSRB3 methionine sulfoxide reductase B3 -0.0605088
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0586085
CDCP1 CUB domain containing protein 1 -0.0584411
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0577971
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.057169
TMSB10 thymosin beta 10 -0.0571039
ANTXR2 anthrax toxin receptor 2 -0.0558625
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0547224
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0492279
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0491265
TFPI2 tissue factor pathway inhibitor 2 -0.04892
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0480338
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0474507
ARHGAP5 Rho GTPase activating protein 5 -0.0471061
TGM2 transglutaminase 2 -0.047008
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0456084
OSMR oncostatin M receptor -0.0454333
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -0.0441623
MTSS1 metastasis suppressor 1 -0.0441463
GLCCI1 glucocorticoid induced 1 -0.0434388
RAP1B RAP1B, member of RAS oncogene family -0.042399
IGFBP3 insulin-like growth factor binding protein 3 -0.0408765
PCBP2 poly(rC) binding protein 2 -0.0407191
AKAP12 A kinase (PRKA) anchor protein 12 -0.0400922
HMGA1 high mobility group AT-hook 1 -0.0398822
NPAS2 neuronal PAS domain protein 2 -0.0394476
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.0391262
HAS2 hyaluronan synthase 2 -0.0374855
MCL1 myeloid cell leukemia 1 -0.0374138
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0344288
ANKRD28 ankyrin repeat domain 28 -0.034314
PSD3 pleckstrin and Sec7 domain containing 3 -0.0341095
FAM107B family with sequence similarity 107, member B -0.0335191
DDIT3 DNA-damage-inducible transcript 3 -0.0334579
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0329758
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0326372
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0325769
MACF1 microtubule-actin crosslinking factor 1 -0.0324856
BLZF1 basic leucine zipper nuclear factor 1 -0.0322143
PKM pyruvate kinase, muscle -0.0320143
KMT2E lysine (K)-specific methyltransferase 2E -0.0311881
GLIS3 GLIS family zinc finger 3 -0.030582
ZSWIM6 zinc finger, SWIM-type containing 6 -0.030098
NPC1 Niemann-Pick disease, type C1 -0.0300167
GFPT2 glutamine-fructose-6-phosphate transaminase 2 -0.029675
NTN4 netrin 4 -0.0288072
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) -0.0280105
VMP1 vacuole membrane protein 1 -0.0280054
CLMP CXADR-like membrane protein -0.0278976
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0277274
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0276469
LOC102724023 ES1 protein homolog, mitochondrial -0.0273157
EMP1 epithelial membrane protein 1 -0.027141
SIK3 SIK family kinase 3 -0.0268966
ATXN1 ataxin 1 -0.0266283
SVIL supervillin -0.0263667
EREG epiregulin -0.026315
RBMS1 RNA binding motif, single stranded interacting protein 1 -0.0262021
FBXO11 F-box protein 11 -0.0261816
FAM20C family with sequence similarity 20, member C -0.0261301
NUMB numb homolog (Drosophila) -0.0261231
PDIA3 protein disulfide isomerase family A, member 3 -0.025815
ECE1 endothelin converting enzyme 1 -0.0257448
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta -0.0256699
ZC3H12C zinc finger CCCH-type containing 12C -0.0256021
TOP1 topoisomerase (DNA) I -0.0254741
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.025419
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0250535
RAB7A RAB7A, member RAS oncogene family -0.0250407
VEGFA vascular endothelial growth factor A -0.0249803
DOCK4 dedicator of cytokinesis 4 -0.0249015