Cobimetinib_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cobimetinib perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cobimetinib_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DSCAM Down syndrome cell adhesion molecule 0.0957012
ZNF292 zinc finger protein 292 0.0793508
SMYD3 SET and MYND domain containing 3 0.0781636
MBNL2 muscleblind-like splicing regulator 2 0.0635375
TXNRD1 thioredoxin reductase 1 0.0634211
ARL15 ADP-ribosylation factor-like 15 0.0629058
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0595819
NAP1L1 nucleosome assembly protein 1-like 1 0.0574037
TPX2 TPX2, microtubule-associated 0.0572631
IGFBP3 insulin-like growth factor binding protein 3 0.0563587
RDX radixin 0.0520018
WAC WW domain containing adaptor with coiled-coil 0.0506005
MTREX Mtr4 exosome RNA helicase 0.0490296
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0480544
ATXN2 ataxin 2 0.0479541
DENND4A DENN/MADD domain containing 4A 0.0464676
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0464487
DST dystonin 0.0458101
NAMPT nicotinamide phosphoribosyltransferase 0.0456043
KIAA1958 KIAA1958 0.0452852
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0451976
GGNBP2 gametogenetin binding protein 2 0.0449009
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0437641
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0436619
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0430355
TBC1D5 TBC1 domain family, member 5 0.0429943
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0429785
NBEA neurobeachin 0.0426764
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0421232
CSNK1A1 casein kinase 1, alpha 1 0.0418252
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0417334
BABAM2 BRISC and BRCA1 A complex member 2 0.0409042
RIGI RNA sensor RIG-I 0.0401138
USP37 ubiquitin specific peptidase 37 0.0400235
GPC6 glypican 6 0.0397943
EXT1 exostosin glycosyltransferase 1 0.0390066
SET SET nuclear proto-oncogene 0.038938
TMEM135 transmembrane protein 135 0.0387127
PUM2 pumilio RNA-binding family member 2 0.0369976
USP12 ubiquitin specific peptidase 12 0.0359672
APOLD1 apolipoprotein L domain containing 1 0.0357282
SLFN11 schlafen family member 11 0.0357001
SPPL3 signal peptide peptidase like 3 0.0353545
RPL23 ribosomal protein L23 0.0353232
SEC62 SEC62 homolog (S. cerevisiae) 0.0351114
FAM13A family with sequence similarity 13, member A 0.0347919
UBE2B ubiquitin-conjugating enzyme E2B 0.0346849
ERBIN erbb2 interacting protein 0.0343883
MTCH2 mitochondrial carrier 2 0.0338675
DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 0.033213
CENPP centromere protein P 0.0331467
FNIP1 folliculin interacting protein 1 0.0331447
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0325878
PHF3 PHD finger protein 3 0.0324846
B2M beta-2-microglobulin 0.0321175
WDR26 WD repeat domain 26 0.0314084
BAZ2B bromodomain adjacent to zinc finger domain, 2B 0.0312316
XPO1 exportin 1 0.0310482
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.0309061
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0308459
KMT2E lysine (K)-specific methyltransferase 2E 0.0308101
RTN4 reticulon 4 0.0304793
RHOBTB3 Rho-related BTB domain containing 3 0.0299707
RNMT RNA (guanine-7-) methyltransferase 0.0293245
PRKD1 protein kinase D1 0.028858
FAF1 Fas (TNFRSF6) associated factor 1 0.0287858
RPS12 ribosomal protein S12 0.0286846
ZBTB10 zinc finger and BTB domain containing 10 0.028534
FBXL17 F-box and leucine-rich repeat protein 17 0.0285046
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0283938
RFC3 replication factor C (activator 1) 3, 38kDa 0.0281396
TRA2A transformer 2 alpha homolog (Drosophila) 0.0279806
WWOX WW domain containing oxidoreductase 0.0277324
ANKHD1 ankyrin repeat and KH domain containing 1 0.0275006
NR2C2 nuclear receptor subfamily 2, group C, member 2 0.0274774
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0271419
SETD5 SET domain containing 5 0.0271065
R3HDM1 R3H domain containing 1 0.0269889
SBF2 SET binding factor 2 0.0269779
SKIC3 SKI3 subunit of superkiller complex 0.0269317
YBX3 Y box binding protein 3 0.0269012
CABIN1 calcineurin binding protein 1 0.026868
NR6A1 nuclear receptor subfamily 6, group A, member 1 0.0267445
CAB39 calcium binding protein 39 0.0266599
HBS1L HBS1-like translational GTPase 0.0266504
KANSL1 KAT8 regulatory NSL complex subunit 1 0.0264051
MMP16 matrix metallopeptidase 16 (membrane-inserted) 0.026265
MED13 mediator complex subunit 13 0.026169
SEPTIN2 septin 2 0.0259063
GOLIM4 golgi integral membrane protein 4 0.0257119
ANKRD12 ankyrin repeat domain 12 0.0255837
LDHB lactate dehydrogenase B 0.0255215
MTDH metadherin 0.0255024
KLHL24 kelch-like family member 24 0.0253864
SAR1B secretion associated, Ras related GTPase 1B 0.0252938
POGLUT3 protein O-glucosyltransferase 3 0.0252487
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 0.0250572
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0250136
SLC35F5 solute carrier family 35, member F5 0.0249679
SBNO2 strawberry notch homolog 2 (Drosophila) 0.0249461

decreased expression

Symbol Name Standardized Value
FNDC3B fibronectin type III domain containing 3B -0.101685
HMGA2 high mobility group AT-hook 2 -0.099736
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0897258
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0788868
LOC112694756 uncharaterized LOC112694756 -0.0777655
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0743355
TPT1 tumor protein, translationally-controlled 1 -0.0739488
ANKRD11 ankyrin repeat domain 11 -0.0729396
MT2A metallothionein 2A -0.0723435
CD44 CD44 molecule (Indian blood group) -0.0696451
AHNAK AHNAK nucleoprotein -0.0691935
NT5E 5'-nucleotidase, ecto (CD73) -0.0652299
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0644938
VIM vimentin -0.0634948
AKAP13 A kinase (PRKA) anchor protein 13 -0.0571383
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0561414
TM4SF1 transmembrane 4 L six family member 1 -0.0555537
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0544874
TMSB10 thymosin beta 10 -0.0543871
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.052831
PKM pyruvate kinase, muscle -0.052611
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0512086
EGR1 early growth response 1 -0.050039
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0499202
MCL1 myeloid cell leukemia 1 -0.048226
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0478632
SMAD3 SMAD family member 3 -0.0477885
LDHA lactate dehydrogenase A -0.0476455
CALU calumenin -0.0463202
FLNA filamin A, alpha -0.0461271
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0460739
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0459842
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0458512
ANGPTL4 angiopoietin-like 4 -0.0451871
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0451149
PRR16 proline rich 16 -0.0423998
DTNA dystrobrevin, alpha -0.0423988
BZW1 basic leucine zipper and W2 domains 1 -0.0416664
NF1 neurofibromin 1 -0.0416149
NIPBL Nipped-B homolog (Drosophila) -0.041497
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.0413565
FLNB filamin B, beta -0.0412334
MCTP1 multiple C2 domains, transmembrane 1 -0.0410555
CCNY cyclin Y -0.0404986
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.04043
ASPH aspartate beta-hydroxylase -0.0402787
CDCP1 CUB domain containing protein 1 -0.0402125
BTG1 B-cell translocation gene 1, anti-proliferative -0.0389221
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0383481
POTEF POTE ankyrin domain family, member F -0.037344
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0373207
PCED1B PC-esterase domain containing 1B -0.0363572
FTH1 ferritin, heavy polypeptide 1 -0.0361625
FMNL2 formin-like 2 -0.0355458
INTS6 integrator complex subunit 6 -0.0354222
TPI1 triosephosphate isomerase 1 -0.0354203
MPRIP myosin phosphatase Rho interacting protein -0.0350977
PYGL phosphorylase, glycogen, liver -0.0343533
UBC ubiquitin C -0.0342996
SDC4 syndecan 4 -0.0339109
SETX senataxin -0.033908
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0333997
DHX34 DEAH (Asp-Glu-Ala-His) box polypeptide 34 -0.0329195
ATG7 autophagy related 7 -0.032024
MACF1 microtubule-actin crosslinking factor 1 -0.031599
SVIL supervillin -0.0314455
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0312098
EP300 E1A binding protein p300 -0.0308625
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.030604
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.030556
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0303813
IL1RAP interleukin 1 receptor accessory protein -0.0303778
CUL3 cullin 3 -0.0299233
KIF5B kinesin family member 5B -0.0298977
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0296452
HM13 histocompatibility (minor) 13 -0.0295047
DNER delta/notch-like EGF repeat containing -0.0294992
MYO9B myosin IXB -0.0293978
EPAS1 endothelial PAS domain protein 1 -0.0293466
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0292834
ARHGAP18 Rho GTPase activating protein 18 -0.0292138
PCNX4 pecanex 4 -0.0291937
TRIP12 thyroid hormone receptor interactor 12 -0.0290462
EPN2 epsin 2 -0.0290262
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 -0.0288712
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0288426
BIRC3 baculoviral IAP repeat containing 3 -0.0288244
EXOC6B exocyst complex component 6B -0.028705
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0282834
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0281025
PDGFA platelet-derived growth factor alpha polypeptide -0.0280917
RPS27A ribosomal protein S27a -0.0279952
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0279841
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 -0.0278341
NLK nemo-like kinase -0.0278037
IER3 immediate early response 3 -0.0277814
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0276402
BRWD1 bromodomain and WD repeat domain containing 1 -0.0275806
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.0275484
RIOK3 RIO kinase 3 -0.0275419