Cyclosporin A_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cyclosporin A perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cyclosporin A_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VEGFA vascular endothelial growth factor A 0.22233
EEF2 eukaryotic translation elongation factor 2 0.146594
PABPC1 poly(A) binding protein, cytoplasmic 1 0.109538
FAT1 FAT atypical cadherin 1 0.0952477
FLNB filamin B, beta 0.0894748
KRT18 keratin 18, type I 0.0863069
ITGA6 integrin, alpha 6 0.0819719
KRT8 keratin 8, type II 0.0785662
MUC6 mucin 6, oligomeric mucus/gel-forming 0.0752044
MYH9 myosin, heavy chain 9, non-muscle 0.0706879
TXNIP thioredoxin interacting protein 0.0704715
NDRG1 N-myc downstream regulated 1 0.0697918
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0686551
RPL3 ribosomal protein L3 0.0649962
DSCAM Down syndrome cell adhesion molecule 0.0648016
SRRM2 serine/arginine repetitive matrix 2 0.0622284
ONECUT3 one cut homeobox 3 0.06087
SREBF2 sterol regulatory element binding transcription factor 2 0.0568052
FAM13A family with sequence similarity 13, member A 0.0553737
ANKRD11 ankyrin repeat domain 11 0.054773
MACF1 microtubule-actin crosslinking factor 1 0.0528727
CALR calreticulin 0.0527277
PTMA prothymosin, alpha 0.0510913
AREG amphiregulin 0.0503755
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0501765
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0471419
WAC WW domain containing adaptor with coiled-coil 0.0448304
NCOR2 nuclear receptor corepressor 2 0.0441726
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0440303
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0434141
PLEC plectin 0.0430347
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0426984
NUMA1 nuclear mitotic apparatus protein 1 0.0424685
CSNK1A1 casein kinase 1, alpha 1 0.0420985
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.041359
DDIT4 DNA-damage-inducible transcript 4 0.0395295
LOC112694756 uncharaterized LOC112694756 0.0393837
LMO7 LIM domain 7 0.039327
MED13L mediator complex subunit 13-like 0.0390808
MYO5B myosin VB 0.0390546
MYH14 myosin, heavy chain 14, non-muscle 0.0389616
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0377669
ASPH aspartate beta-hydroxylase 0.0376227
MINK1 misshapen-like kinase 1 0.0372222
MPRIP myosin phosphatase Rho interacting protein 0.0367934
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 0.0362929
RPS12 ribosomal protein S12 0.035606
TBC1D22A TBC1 domain family, member 22A 0.0348679
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0341431
TNIP1 TNFAIP3 interacting protein 1 0.0341194
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0340584
MED13 mediator complex subunit 13 0.0337824
PTPRF protein tyrosine phosphatase, receptor type, F 0.0336961
SETD5 SET domain containing 5 0.033598
MUC5AC mucin 5AC, oligomeric mucus/gel-forming 0.0334774
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0334599
GRB10 growth factor receptor-bound protein 10 0.0331566
MT2A metallothionein 2A 0.0329775
RNF145 ring finger protein 145 0.0318241
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0317471
PDIA3 protein disulfide isomerase family A, member 3 0.031328
EREG epiregulin 0.0311517
RNASE12 ribonuclease, RNase A family, 12 (non-active) 0.0311036
UBA6 ubiquitin-like modifier activating enzyme 6 0.0306707
BAIAP2L1 BAI1-associated protein 2-like 1 0.0305301
ITPRID2 ITPR interacting domain containing 2 0.030485
PRRC2C proline-rich coiled-coil 2C 0.0303173
RREB1 ras responsive element binding protein 1 0.0302617
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 0.0297972
EIF4B eukaryotic translation initiation factor 4B 0.0297965
PDIA6 protein disulfide isomerase family A, member 6 0.0296276
ACADVL acyl-CoA dehydrogenase, very long chain 0.0296145
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0295752
CCNY cyclin Y 0.0294733
TMSB4X thymosin beta 4, X-linked 0.0291837
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0288113
PNN pinin, desmosome associated protein 0.0286048
DSPP dentin sialophosphoprotein 0.0281271
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0280915
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0280438
GSK3B glycogen synthase kinase 3 beta 0.0279525
ZFAND3 zinc finger, AN1-type domain 3 0.0278827
BIRC6 baculoviral IAP repeat containing 6 0.0275913
BHLHE40 basic helix-loop-helix family, member e40 0.0273826
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0270976
CARS1 cysteinyl-tRNA synthetase 1 0.0267191
APP amyloid beta (A4) precursor protein 0.0265754
ESYT2 extended synaptotagmin-like protein 2 0.0261509
MLEC malectin 0.0259352
WSB1 WD repeat and SOCS box containing 1 0.0258139
NUPR1 nuclear protein, transcriptional regulator, 1 0.0254163
MYO18A myosin XVIIIA 0.0252944
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0251526
MBNL2 muscleblind-like splicing regulator 2 0.0250773
HSPA8 heat shock 70kDa protein 8 0.0249672
LENG8 leukocyte receptor cluster (LRC) member 8 0.0249134
TNS4 tensin 4 0.0248845
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.0247824
MKNK2 MAP kinase interacting serine/threonine kinase 2 0.0247631
RNF43 ring finger protein 43 0.0246767

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.163035
NPSR1 neuropeptide S receptor 1 -0.100037
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0923869
GMDS GDP-mannose 4,6-dehydratase -0.0598208
NALF1 NALCN channel auxiliary factor 1 -0.0581672
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0559154
TPT1 tumor protein, translationally-controlled 1 -0.0503942
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0490919
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0461717
AHNAK AHNAK nucleoprotein -0.0454404
ALCAM activated leukocyte cell adhesion molecule -0.0439582
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0428077
RPS24 ribosomal protein S24 -0.040427
GPHN gephyrin -0.0393332
VCL vinculin -0.0337372
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0322965
CCND1 cyclin D1 -0.0321829
TMSB10 thymosin beta 10 -0.0312669
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0307316
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0302137
DSTN destrin (actin depolymerizing factor) -0.0299604
FHIT fragile histidine triad -0.0253226
RPL4 ribosomal protein L4 -0.0252837
TFRC transferrin receptor -0.0250817
LDHA lactate dehydrogenase A -0.0242533
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0241624
HMGB1 high mobility group box 1 -0.0239321
CD44 CD44 molecule (Indian blood group) -0.022807
IGFL2 IGF-like family member 2 -0.0227859
IER3 immediate early response 3 -0.0222321
MBD5 methyl-CpG binding domain protein 5 -0.0219799
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0215706
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0214164
RPLP1 ribosomal protein, large, P1 -0.0208086
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0207108
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -0.0205396
DEK DEK proto-oncogene -0.0204864
TPM4 tropomyosin 4 -0.0200094
PDE4D phosphodiesterase 4D, cAMP-specific -0.0200016
POTEF POTE ankyrin domain family, member F -0.019801
SERINC5 serine incorporator 5 -0.0196582
ATP5F1B ATP synthase F1 subunit beta -0.0193997
GCC2 GRIP and coiled-coil domain containing 2 -0.0193069
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor -0.0190365
ABLIM1 actin binding LIM protein 1 -0.0189419
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0185228
BTG1 B-cell translocation gene 1, anti-proliferative -0.0182503
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0181963
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0180787
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.018009
SAMD5 sterile alpha motif domain containing 5 -0.0179808
MYO1D myosin ID -0.0179419
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0178287
RNF217 ring finger protein 217 -0.0174058
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.0172753
CCSER1 coiled-coil serine-rich protein 1 -0.0170638
FRMD5 FERM domain containing 5 -0.0166014
RPS20 ribosomal protein S20 -0.0165077
TMEM123 transmembrane protein 123 -0.0164557
BSG basigin (Ok blood group) -0.0163934
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0163904
SLC35F3 solute carrier family 35, member F3 -0.0161196
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0159935
CENPF centromere protein F, 350/400kDa -0.0156803
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0156554
ARF4 ADP-ribosylation factor 4 -0.0155456
SMC4 structural maintenance of chromosomes 4 -0.0154289
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0154142
PDIA4 protein disulfide isomerase family A, member 4 -0.0153686
SPIDR scaffolding protein involved in DNA repair -0.015347
MON2 MON2 homolog (S. cerevisiae) -0.0151705
CDK6 cyclin-dependent kinase 6 -0.0150643
PKP4 plakophilin 4 -0.0149637
MECOM MDS1 and EVI1 complex locus -0.0149279
EXT1 exostosin glycosyltransferase 1 -0.0149112
FAF1 Fas (TNFRSF6) associated factor 1 -0.0147696
HMGA1 high mobility group AT-hook 1 -0.0146165
FBXO33 F-box protein 33 -0.014602
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0145464
FBXO34 F-box protein 34 -0.014419
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.0140494
EIF5B eukaryotic translation initiation factor 5B -0.0140128
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0140028
RPS2 ribosomal protein S2 -0.0139799
WWC1 WW and C2 domain containing 1 -0.0139639
PELI1 pellino E3 ubiquitin protein ligase 1 -0.0138248
MTAP methylthioadenosine phosphorylase -0.0138237
MAN2A1 mannosidase, alpha, class 2A, member 1 -0.0138001
CACNB2 calcium channel, voltage-dependent, beta 2 subunit -0.013787
FOXP1 forkhead box P1 -0.0136256
CXADR coxsackie virus and adenovirus receptor -0.0135919
LSAMP limbic system-associated membrane protein -0.013536
LAMA4 laminin, alpha 4 -0.0133116
KLK10 kallikrein-related peptidase 10 -0.0133067
TUBA1B tubulin, alpha 1b -0.0131402
SCLT1 sodium channel and clathrin linker 1 -0.0130455
DLG1 discs, large homolog 1 (Drosophila) -0.0130288
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0129672
CENPE centromere protein E, 312kDa -0.012873
MYL12B myosin, light chain 12B, regulatory -0.0128718