Cyclosporin A_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cyclosporin A perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cyclosporin A_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SREBF2 sterol regulatory element binding transcription factor 2 0.136088
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.11368
ICAM1 intercellular adhesion molecule 1 0.0751886
SLC39A11 solute carrier family 39, member 11 0.0725454
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0618661
FLNA filamin A, alpha 0.0608623
PLEC plectin 0.0569187
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.0527909
PRELID2 PRELI domain containing 2 0.0520988
SFTPA2 surfactant protein A2 0.0516698
SQSTM1 sequestosome 1 0.0514432
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0510296
SPAG9 sperm associated antigen 9 0.0487851
CTTN cortactin 0.0472131
MSI2 musashi RNA-binding protein 2 0.0463725
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0428404
ANGPTL4 angiopoietin-like 4 0.0428075
NDRG1 N-myc downstream regulated 1 0.0416279
EEF2 eukaryotic translation elongation factor 2 0.0404921
PRRC2C proline-rich coiled-coil 2C 0.0384323
CANX calnexin 0.0380991
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.036661
EIF1 eukaryotic translation initiation factor 1 0.0365032
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0356993
TNIP1 TNFAIP3 interacting protein 1 0.0356658
CEP250 centrosomal protein 250kDa 0.0353298
MYH9 myosin, heavy chain 9, non-muscle 0.0352763
GARS1 glycyl-tRNA synthetase 1 0.0352288
OGA O-GlcNAcase 0.0348587
VIM vimentin 0.0348509
ASPH aspartate beta-hydroxylase 0.0346139
ELL2 elongation factor, RNA polymerase II, 2 0.0345894
BHLHE40 basic helix-loop-helix family, member e40 0.0342602
MMP12 matrix metallopeptidase 12 0.0337392
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0336539
TPM3 tropomyosin 3 0.0336219
SOD2 superoxide dismutase 2, mitochondrial 0.0335899
SEPTIN9 septin 9 0.0331395
STK10 serine/threonine kinase 10 0.032919
FMNL2 formin-like 2 0.0327709
KDM5B lysine (K)-specific demethylase 5B 0.0322318
VEGFA vascular endothelial growth factor A 0.0318854
MORF4L2 mortality factor 4 like 2 0.0313991
NAMPT nicotinamide phosphoribosyltransferase 0.0310712
INPP5F inositol polyphosphate-5-phosphatase F 0.0309382
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 0.0305514
NPC1 Niemann-Pick disease, type C1 0.0305358
NGLY1 N-glycanase 1 0.0303355
EP300 E1A binding protein p300 0.0301036
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0296883
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0293424
LINGO2 leucine rich repeat and Ig domain containing 2 0.0289713
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0287433
KMT2E lysine (K)-specific methyltransferase 2E 0.0286432
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0279288
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0279168
AKAP10 A kinase (PRKA) anchor protein 10 0.0277766
RAB7A RAB7A, member RAS oncogene family 0.0273945
DSCAM Down syndrome cell adhesion molecule 0.0273648
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0271723
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0270453
CTBP2 C-terminal binding protein 2 0.026985
FYN FYN proto-oncogene, Src family tyrosine kinase 0.0265073
MCTP2 multiple C2 domains, transmembrane 2 0.0263479
ESYT2 extended synaptotagmin-like protein 2 0.0262907
KTN1 kinectin 1 (kinesin receptor) 0.0258115
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0256186
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0255331
CNIH3 cornichon family AMPA receptor auxiliary protein 3 0.0254762
CAMTA1 calmodulin binding transcription activator 1 0.0254069
WDR45B WD repeat domain 45B 0.0252526
MARK3 MAP/microtubule affinity-regulating kinase 3 0.0251942
ANK2 ankyrin 2, neuronal 0.0245642
ADAM17 ADAM metallopeptidase domain 17 0.0244153
NAV2 neuron navigator 2 0.0241229
CFDP1 craniofacial development protein 1 0.0241091
BACE2 beta-site APP-cleaving enzyme 2 0.0240625
MAP2K1 mitogen-activated protein kinase kinase 1 0.0239537
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0237676
UBA6 ubiquitin-like modifier activating enzyme 6 0.0237558
KDM4C lysine (K)-specific demethylase 4C 0.0235196
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0234867
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0232333
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0230443
TRIO trio Rho guanine nucleotide exchange factor 0.0226669
KMT2C lysine (K)-specific methyltransferase 2C 0.0226015
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0224045
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0222467
NFE2L1 nuclear factor, erythroid 2-like 1 0.0221656
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.02208
PTPRF protein tyrosine phosphatase, receptor type, F 0.0219599
RPS3 ribosomal protein S3 0.021931
TM4SF1 transmembrane 4 L six family member 1 0.0219114
ZMIZ1 zinc finger, MIZ-type containing 1 0.0218934
IARS1 isoleucyl-tRNA synthetase 1 0.0217957
BRWD3 bromodomain and WD repeat domain containing 3 0.0217767
ARRDC3 arrestin domain containing 3 0.0216803
TCOF1 Treacher Collins-Franceschetti syndrome 1 0.02153
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0214627
TMEM51 transmembrane protein 51 0.0214532

decreased expression

Symbol Name Standardized Value
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.183869
FN1 fibronectin 1 -0.113246
FMN1 formin 1 -0.104298
FRMD5 FERM domain containing 5 -0.0950241
CCND1 cyclin D1 -0.0790153
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) -0.0549042
CDK6 cyclin-dependent kinase 6 -0.0531242
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0519928
AKAP12 A kinase (PRKA) anchor protein 12 -0.0496273
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0408399
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0405976
POTEF POTE ankyrin domain family, member F -0.0390641
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0376062
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0352556
MAML3 mastermind-like 3 (Drosophila) -0.0311172
ANKRD28 ankyrin repeat domain 28 -0.0307726
RAD51B RAD51 paralog B -0.0300106
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0293635
SOX6 SRY (sex determining region Y)-box 6 -0.0290838
FRMD4A FERM domain containing 4A -0.0289329
TBC1D5 TBC1 domain family, member 5 -0.0285805
RUNX1 runt-related transcription factor 1 -0.0269696
MACROD2 MACRO domain containing 2 -0.0262749
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0250092
IGF1R insulin-like growth factor 1 receptor -0.0245557
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like -0.0239439
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0238755
TSC22D2 TSC22 domain family, member 2 -0.023335
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0227828
RIGI RNA sensor RIG-I -0.0225798
TXNRD1 thioredoxin reductase 1 -0.0221549
EPB41L2 erythrocyte membrane protein band 4.1-like 2 -0.0218651
IFI6 interferon, alpha-inducible protein 6 -0.0218191
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.021786
PTPN14 protein tyrosine phosphatase, non-receptor type 14 -0.0215075
PLSCR1 phospholipid scramblase 1 -0.0210246
ZC3H12B zinc finger CCCH-type containing 12B -0.020978
PHF14 PHD finger protein 14 -0.0206363
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0204986
BPTF bromodomain PHD finger transcription factor -0.0198921
TMSB10 thymosin beta 10 -0.0196277
RNF213 ring finger protein 213 -0.019567
GRIK5 glutamate receptor, ionotropic, kainate 5 -0.0195289
SPIDR scaffolding protein involved in DNA repair -0.0192698
ZZZ3 zinc finger, ZZ-type containing 3 -0.0192379
LINC02798 long intergenic non-protein coding RNA 2798 -0.0192114
HMGA1 high mobility group AT-hook 1 -0.0189245
PNPT1 polyribonucleotide nucleotidyltransferase 1 -0.0189045
OSBPL10 oxysterol binding protein-like 10 -0.0188754
BICD1 bicaudal D homolog 1 (Drosophila) -0.0188602
PMP22 peripheral myelin protein 22 -0.0188273
CBX3 chromobox homolog 3 -0.0185837
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0185258
ARB2A ARB2 cotranscriptional regulator A -0.0185053
SMC4 structural maintenance of chromosomes 4 -0.0184818
EFNA5 ephrin-A5 -0.0184426
ERBIN erbb2 interacting protein -0.0183511
MTAP methylthioadenosine phosphorylase -0.0181406
KIF5C kinesin family member 5C -0.0180534
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0179907
RPS16 ribosomal protein S16 -0.0179576
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0178507
MARCHF7 membrane associated ring-CH-type finger 7 -0.0178406
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough -0.0178374
SMYD3 SET and MYND domain containing 3 -0.0178227
NRXN3 neurexin 3 -0.0177479
BCAS3 breast carcinoma amplified sequence 3 -0.0175102
AKAP9 A kinase (PRKA) anchor protein 9 -0.0170423
FHIT fragile histidine triad -0.0170045
ETV6 ets variant 6 -0.0169402
RASAL2 RAS protein activator like 2 -0.0168034
PRAME preferentially expressed antigen in melanoma -0.0167611
PCNX4 pecanex 4 -0.0167139
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0166441
MAML2 mastermind-like 2 (Drosophila) -0.0166316
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0163262
FBXL17 F-box and leucine-rich repeat protein 17 -0.0162552
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 -0.0162317
FOXP1 forkhead box P1 -0.016169
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0158903
PBX3 pre-B-cell leukemia homeobox 3 -0.0158558
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 -0.0157427
CENPE centromere protein E, 312kDa -0.0154847
IFI44L interferon-induced protein 44-like -0.0154619
EHBP1 EH domain binding protein 1 -0.0152502
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0151944
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.015139
ULK4 unc-51 like kinase 4 -0.0148959
BTBD9 BTB (POZ) domain containing 9 -0.0148875
ARID1B AT rich interactive domain 1B (SWI1-like) -0.0148327
WNT2B wingless-type MMTV integration site family, member 2B -0.0146555
SREK1 splicing regulatory glutamine/lysine-rich protein 1 -0.0145399
TCF12 transcription factor 12 -0.0145253
COMMD10 COMM domain containing 10 -0.0144176
LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein -0.0142481
RHOBTB3 Rho-related BTB domain containing 3 -0.0142294
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.0141482
PARP9 poly (ADP-ribose) polymerase family, member 9 -0.0141293
DHFR dihydrofolate reductase -0.0140293
SCFD2 sec1 family domain containing 2 -0.0139039