Cytarabine (hydrochloride)_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine (hydrochloride) perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine (hydrochloride)_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.228011
DSPP dentin sialophosphoprotein 0.108711
LMO7 LIM domain 7 0.0986492
KRT8 keratin 8, type II 0.0928994
MON2 MON2 homolog (S. cerevisiae) 0.0819795
DERA deoxyribose-phosphate aldolase (putative) 0.0786219
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0757238
KITLG KIT ligand 0.0744409
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0722031
FAM13A family with sequence similarity 13, member A 0.0706553
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0696117
ANKRD11 ankyrin repeat domain 11 0.068364
KIAA1217 KIAA1217 0.0682165
ZFAND3 zinc finger, AN1-type domain 3 0.0672983
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0653463
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0653253
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0651223
RPS12 ribosomal protein S12 0.0640694
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0639533
TTC3 tetratricopeptide repeat domain 3 0.0608858
GDF15 growth differentiation factor 15 0.0602801
AREG amphiregulin 0.0582805
GOLGA4 golgin A4 0.0576692
MED13L mediator complex subunit 13-like 0.0565029
RAB1A RAB1A, member RAS oncogene family 0.0564191
PCBP2 poly(rC) binding protein 2 0.0564048
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0558158
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0558065
MACF1 microtubule-actin crosslinking factor 1 0.0555713
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0554606
RBM39 RNA binding motif protein 39 0.0551812
FAT1 FAT atypical cadherin 1 0.0551066
DDB2 damage-specific DNA binding protein 2, 48kDa 0.0548966
SDC4 syndecan 4 0.0535722
EIF4A2 eukaryotic translation initiation factor 4A2 0.053394
MBNL2 muscleblind-like splicing regulator 2 0.0523575
CALR calreticulin 0.0510963
B2M beta-2-microglobulin 0.0508942
ACTG1 actin gamma 1 0.0504454
FDXR ferredoxin reductase 0.0503416
EPS8 epidermal growth factor receptor pathway substrate 8 0.0496857
APP amyloid beta (A4) precursor protein 0.0491067
DSCAM Down syndrome cell adhesion molecule 0.0484297
YBX3 Y box binding protein 3 0.0471493
PUM2 pumilio RNA-binding family member 2 0.0469839
EREG epiregulin 0.04676
ETNK1 ethanolamine kinase 1 0.0457129
KMT2C lysine (K)-specific methyltransferase 2C 0.0451692
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 0.0449534
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0446136
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 0.0441174
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0440203
SEC31A SEC31 homolog A (S. cerevisiae) 0.0435982
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0426514
PABPC1 poly(A) binding protein, cytoplasmic 1 0.042469
SPAG9 sperm associated antigen 9 0.0424385
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0424348
OGA O-GlcNAcase 0.0414435
WDR45B WD repeat domain 45B 0.0413549
KDM3A lysine (K)-specific demethylase 3A 0.040852
LAMA4 laminin, alpha 4 0.0408302
KDM6A lysine (K)-specific demethylase 6A 0.040753
GADD45A growth arrest and DNA-damage-inducible, alpha 0.0406992
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0405338
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0396703
TMSB4X thymosin beta 4, X-linked 0.0395495
EIF4B eukaryotic translation initiation factor 4B 0.0394267
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D 0.0391324
RPS3 ribosomal protein S3 0.0390649
TPM3 tropomyosin 3 0.0386251
CANX calnexin 0.0384504
EXT1 exostosin glycosyltransferase 1 0.0383539
CDC50A cell division cycle 50 P4-ATPase accessory subunit A 0.0382313
RPL26 ribosomal protein L26 0.0380267
TRIM24 tripartite motif containing 24 0.0374432
GSK3B glycogen synthase kinase 3 beta 0.0373024
KMT2E lysine (K)-specific methyltransferase 2E 0.0368906
RPS8 ribosomal protein S8 0.0365894
LAMB3 laminin, beta 3 0.0364175
ZSWIM6 zinc finger, SWIM-type containing 6 0.0363984
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0363777
BZW1 basic leucine zipper and W2 domains 1 0.0354951
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0349666
GRB10 growth factor receptor-bound protein 10 0.0348793
RPL7 ribosomal protein L7 0.0347345
WAC WW domain containing adaptor with coiled-coil 0.0346697
AHNAK AHNAK nucleoprotein 0.0344463
WDR43 WD repeat domain 43 0.0343082
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0340363
SHROOM3 shroom family member 3 0.0340271
LRRC1 leucine rich repeat containing 1 0.0339668
MARCHF6 membrane associated ring-CH-type finger 6 0.0338283
MYH9 myosin, heavy chain 9, non-muscle 0.0336171
ZNF654 zinc finger protein 654 0.0335987
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0332994
IARS1 isoleucyl-tRNA synthetase 1 0.0330657
PSTPIP2 proline-serine-threonine phosphatase interacting protein 2 0.0330069
OSBPL3 oxysterol binding protein-like 3 0.0329838
PARD3 par-3 family cell polarity regulator 0.0324829
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0324753

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.166557
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.134795
NPSR1 neuropeptide S receptor 1 -0.119911
MUC6 mucin 6, oligomeric mucus/gel-forming -0.109021
TNS4 tensin 4 -0.0923812
TXNIP thioredoxin interacting protein -0.0825523
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0822419
TMSB10 thymosin beta 10 -0.0786503
NALF1 NALCN channel auxiliary factor 1 -0.0737018
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0736076
CADPS Ca++-dependent secretion activator -0.0554251
NDRG1 N-myc downstream regulated 1 -0.0531602
MUC5AC mucin 5AC, oligomeric mucus/gel-forming -0.0506742
RNF43 ring finger protein 43 -0.0504932
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0446911
EZR ezrin -0.0417791
FTH1 ferritin, heavy polypeptide 1 -0.0375572
FTL ferritin, light polypeptide -0.0369706
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0369142
PPARG peroxisome proliferator-activated receptor gamma -0.0368469
FHIT fragile histidine triad -0.0366276
H1-0 H1.0 linker histone -0.036552
CEMIP cell migration inducing protein, hyaluronan binding -0.0361203
CALB1 calbindin 1, 28kDa -0.0351207
HMGA1 high mobility group AT-hook 1 -0.0344746
MUC17 mucin 17, cell surface associated -0.0333852
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0332753
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0315957
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0300525
CENPF centromere protein F, 350/400kDa -0.0289259
PKP2 plakophilin 2 -0.0288616
PRSS3 protease, serine, 3 -0.0281115
DIAPH2 diaphanous-related formin 2 -0.0280994
LGALS4 lectin, galactoside-binding, soluble, 4 -0.0278349
TRIM2 tripartite motif containing 2 -0.0278188
EGR1 early growth response 1 -0.0277879
CCND1 cyclin D1 -0.0271404
CDK6 cyclin-dependent kinase 6 -0.0262619
ANXA2 annexin A2 -0.0259922
MAML3 mastermind-like 3 (Drosophila) -0.0240796
GREB1L growth regulation by estrogen in breast cancer-like -0.0236566
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0235519
KLF3 Kruppel-like factor 3 (basic) -0.0223978
RNF217 ring finger protein 217 -0.0220565
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.021987
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) -0.0218106
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0217769
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0212903
TSC22D1 TSC22 domain family, member 1 -0.0209
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0207591
SAMD5 sterile alpha motif domain containing 5 -0.0201614
FLNB filamin B, beta -0.0198583
ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 -0.0196968
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0192718
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0192233
FOSL1 FOS-like antigen 1 -0.0190759
FOXP1 forkhead box P1 -0.0188776
ALCAM activated leukocyte cell adhesion molecule -0.0187553
CBX3 chromobox homolog 3 -0.0186857
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0185233
PKM pyruvate kinase, muscle -0.0182483
MYC v-myc avian myelocytomatosis viral oncogene homolog -0.0180701
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 -0.017941
MAML2 mastermind-like 2 (Drosophila) -0.0178225
PHGR1 proline/histidine/glycine-rich 1 -0.0177974
PRELID2 PRELI domain containing 2 -0.0177083
PFN1 profilin 1 -0.0176232
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 -0.0172124
TMBIM6 transmembrane BAX inhibitor motif containing 6 -0.0169345
LSAMP limbic system-associated membrane protein -0.0168954
NFIA nuclear factor I/A -0.0167534
TMEM123 transmembrane protein 123 -0.0166879
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 -0.016565
ABR active BCR-related -0.0165592
ZBTB20 zinc finger and BTB domain containing 20 -0.0164505
TC2N tandem C2 domains, nuclear -0.0163156
S100A10 S100 calcium binding protein A10 -0.0162466
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0159477
ATXN1 ataxin 1 -0.0158671
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 -0.0157503
ZFP36L2 ZFP36 ring finger protein-like 2 -0.0156933
CLDN7 claudin 7 -0.0155149
KRT19 keratin 19, type I -0.0154361
CENPE centromere protein E, 312kDa -0.0153535
EPHB2 EPH receptor B2 -0.0153516
MT1X metallothionein 1X -0.0153412
MECOM MDS1 and EVI1 complex locus -0.0152815
TRABD2A TraB domain containing 2A -0.0151453
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0150553
ATF7IP activating transcription factor 7 interacting protein -0.0148804
PERP PERP, TP53 apoptosis effector -0.0148273
SAMD12 sterile alpha motif domain containing 12 -0.0147274
MUC5B mucin 5B, oligomeric mucus/gel-forming -0.0146655
RPL31 ribosomal protein L31 -0.0145846
PTCH1 patched 1 -0.014511
F3 coagulation factor III (thromboplastin, tissue factor) -0.0145004
PTPRR protein tyrosine phosphatase, receptor type, R -0.0144382
NFIX nuclear factor I/X (CCAAT-binding transcription factor) -0.0143512
SH3RF2 SH3 domain containing ring finger 2 -0.0141578
TUBB4B tubulin, beta 4B class IVb -0.0141197