Cytarabine (hydrochloride)_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine (hydrochloride) perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine (hydrochloride)_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PM20D1 peptidase M20 domain containing 1 0.195396
PDE4D phosphodiesterase 4D, cAMP-specific 0.124966
FGB fibrinogen beta chain 0.0958591
POTEF POTE ankyrin domain family, member F 0.0869603
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0824418
WWOX WW domain containing oxidoreductase 0.0727308
TFPI2 tissue factor pathway inhibitor 2 0.0723945
RRM2 ribonucleotide reductase M2 0.0713495
TM4SF1 transmembrane 4 L six family member 1 0.0668435
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.065764
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0597217
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0573548
WDR43 WD repeat domain 43 0.0571397
TPM3 tropomyosin 3 0.0516655
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0511617
CCNL1 cyclin L1 0.0511304
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0496712
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0495785
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 0.0480541
YBX3 Y box binding protein 3 0.0472297
PFN1 profilin 1 0.0462216
FGG fibrinogen gamma chain 0.0461383
PCBP2 poly(rC) binding protein 2 0.045526
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0446218
USP3 ubiquitin specific peptidase 3 0.041932
TXNRD1 thioredoxin reductase 1 0.040243
RPL23 ribosomal protein L23 0.0399959
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0395729
BIRC2 baculoviral IAP repeat containing 2 0.0389329
RAD51B RAD51 paralog B 0.0368064
RPS21 ribosomal protein S21 0.0362094
DIAPH3 diaphanous-related formin 3 0.0360129
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.0344863
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0343966
DDAH1 dimethylarginine dimethylaminohydrolase 1 0.0340815
ATAD2 ATPase family, AAA domain containing 2 0.0337352
FAM168A family with sequence similarity 168, member A 0.0334713
ECT2 epithelial cell transforming 2 0.033274
RPS12 ribosomal protein S12 0.0332657
BIRC3 baculoviral IAP repeat containing 3 0.0326646
EIF4A1 eukaryotic translation initiation factor 4A1 0.0326205
TPI1 triosephosphate isomerase 1 0.0320894
NUP58 nucleoporin 58 0.0314857
SPIDR scaffolding protein involved in DNA repair 0.0314677
AHR aryl hydrocarbon receptor 0.0312228
NNMT nicotinamide N-methyltransferase 0.030542
NCOA7 nuclear receptor coactivator 7 0.0302565
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0301599
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0300123
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0292917
RPL4 ribosomal protein L4 0.0292721
PDLIM5 PDZ and LIM domain 5 0.0291791
BCLAF1 BCL2-associated transcription factor 1 0.0290416
TFG TRK-fused gene 0.02847
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.0277847
OLA1 Obg-like ATPase 1 0.0274753
RTN4 reticulon 4 0.027029
TUBB tubulin, beta class I 0.0267221
PRR16 proline rich 16 0.0265942
MORF4L1 mortality factor 4 like 1 0.0265806
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0263255
PALS1 protein associated with LIN7 1, MAGUK p55 family member 0.0256715
RAD21 RAD21 homolog (S. pombe) 0.0253353
TUBA1B tubulin, alpha 1b 0.0251723
NEGR1 neuronal growth regulator 1 0.0251354
EIF4A3 eukaryotic translation initiation factor 4A3 0.025016
DEK DEK proto-oncogene 0.024966
TTC28 tetratricopeptide repeat domain 28 0.0245117
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0242459
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0238916
RPL7 ribosomal protein L7 0.0237911
CBX5 chromobox homolog 5 0.0237277
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0236472
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0235946
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.023439
SDC4 syndecan 4 0.0233185
CHN1 chimerin 1 0.0232548
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 0.0232005
FANCA Fanconi anemia, complementation group A 0.0231068
JAK1 Janus kinase 1 0.022945
ADAM9 ADAM metallopeptidase domain 9 0.0227933
ASPH aspartate beta-hydroxylase 0.0225609
WTAP Wilms tumor 1 associated protein 0.0225505
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0225335
CAMTA1 calmodulin binding transcription activator 1 0.0222718
KHDC4 KH domain containing 4, pre-mRNA splicing factor 0.0222618
ATP5F1B ATP synthase F1 subunit beta 0.0222215
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0221719
FXR1 fragile X mental retardation, autosomal homolog 1 0.0218916
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0218835
PRIM2 primase, DNA, polypeptide 2 (58kDa) 0.0218326
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0218088
LRMDA leucine rich melanocyte differentiation associated 0.0217057
TBC1D5 TBC1 domain family, member 5 0.0215332
EIF5AL1 eukaryotic translation initiation factor 5A-like 1 0.0215145
SLC38A2 solute carrier family 38, member 2 0.0214475
ACTG1 actin gamma 1 0.0214189
PTP4A1 protein tyrosine phosphatase type IVA, member 1 0.0213356
PNN pinin, desmosome associated protein 0.0213276
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0213094

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.363626
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.155115
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.153034
IGFBP3 insulin-like growth factor binding protein 3 -0.0950326
THSD4 thrombospondin, type I, domain containing 4 -0.0946396
TRIO trio Rho guanine nucleotide exchange factor -0.0928786
PYGL phosphorylase, glycogen, liver -0.0894033
FLNB filamin B, beta -0.087863
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0853415
EGFR epidermal growth factor receptor -0.0795742
DOCK4 dedicator of cytokinesis 4 -0.0764855
VIM vimentin -0.0748155
CMIP c-Maf inducing protein -0.0743238
FMNL2 formin-like 2 -0.0735532
CAVIN1 caveolae associated protein 1 -0.065149
IER3 immediate early response 3 -0.0567383
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0558216
ERBIN erbb2 interacting protein -0.0536331
UBASH3B ubiquitin associated and SH3 domain containing B -0.0474244
ZFHX3 zinc finger homeobox 3 -0.0458504
DOCK5 dedicator of cytokinesis 5 -0.0457831
SNX14 sorting nexin 14 -0.0439115
FTH1 ferritin, heavy polypeptide 1 -0.0431765
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0427659
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0424022
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0420357
ZMYND8 zinc finger, MYND-type containing 8 -0.0395629
CUX1 cut-like homeobox 1 -0.0395525
MYOF myoferlin -0.0393594
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0393281
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0392576
OSMR oncostatin M receptor -0.0382024
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.037539
GRAMD1B GRAM domain containing 1B -0.0369485
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0367417
NEBL nebulette -0.0363525
CDK13 cyclin-dependent kinase 13 -0.0362432
USP34 ubiquitin specific peptidase 34 -0.0361067
EIF1 eukaryotic translation initiation factor 1 -0.0359305
CSNK1A1 casein kinase 1, alpha 1 -0.0355027
NUMB numb homolog (Drosophila) -0.0352401
BIRC6 baculoviral IAP repeat containing 6 -0.0350225
NDRG1 N-myc downstream regulated 1 -0.0343428
SVIL supervillin -0.0337291
SAMD4A sterile alpha motif domain containing 4A -0.0335366
HLA-A major histocompatibility complex, class I, A -0.0331213
ITCH itchy E3 ubiquitin protein ligase -0.0328814
FAM107B family with sequence similarity 107, member B -0.0324326
AKAP12 A kinase (PRKA) anchor protein 12 -0.0322305
CFDP1 craniofacial development protein 1 -0.0320292
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0320082
HLA-E major histocompatibility complex, class I, E -0.0318039
WAC WW domain containing adaptor with coiled-coil -0.0307318
SQSTM1 sequestosome 1 -0.0305409
NF1 neurofibromin 1 -0.0304949
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0300523
PTPRM protein tyrosine phosphatase, receptor type, M -0.0298968
ARHGAP26 Rho GTPase activating protein 26 -0.029679
HM13 histocompatibility (minor) 13 -0.0293591
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0292551
CLIP1 CAP-GLY domain containing linker protein 1 -0.0291345
HIBADH 3-hydroxyisobutyrate dehydrogenase -0.0290443
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 -0.0284734
ACTN1 actinin, alpha 1 -0.0284067
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0283265
LOC102724023 ES1 protein homolog, mitochondrial -0.0281846
FOXP1 forkhead box P1 -0.0276827
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0275717
CEP350 centrosomal protein 350kDa -0.0275251
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0274714
NEMF nuclear export mediator factor -0.0274501
TPM4 tropomyosin 4 -0.0273436
APP amyloid beta (A4) precursor protein -0.0272913
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0271001
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0270754
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0270239
MAML3 mastermind-like 3 (Drosophila) -0.0270157
CHD9 chromodomain helicase DNA binding protein 9 -0.0269954
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0269895
RBM39 RNA binding motif protein 39 -0.0269125
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0268979
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0267227
SH3KBP1 SH3-domain kinase binding protein 1 -0.0266094
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0257721
STC2 stanniocalcin 2 -0.0257613
RUNX1 runt-related transcription factor 1 -0.0256824
EPAS1 endothelial PAS domain protein 1 -0.0252611
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) -0.0251734
CFLAR CASP8 and FADD-like apoptosis regulator -0.0250562
RBM25 RNA binding motif protein 25 -0.0249068
BTBD9 BTB (POZ) domain containing 9 -0.0248922
CTBP2 C-terminal binding protein 2 -0.0248585
ANKRD11 ankyrin repeat domain 11 -0.0248216
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0247251
RSPRY1 ring finger and SPRY domain containing 1 -0.0247039
ZEB1 zinc finger E-box binding homeobox 1 -0.0245614
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.02455
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.024486
RAP1GAP2 RAP1 GTPase activating protein 2 -0.0243972
USP36 ubiquitin specific peptidase 36 -0.0243151