Cytarabine (hydrochloride)_RPMI-7951 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine (hydrochloride) perturbation in RPMI-7951 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine (hydrochloride)_RPMI-7951 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FNDC3B fibronectin type III domain containing 3B 0.0972515
ZNF292 zinc finger protein 292 0.0907442
CXCL8 chemokine (C-X-C motif) ligand 8 0.0653021
NAMPT nicotinamide phosphoribosyltransferase 0.060583
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0573576
MYH9 myosin, heavy chain 9, non-muscle 0.0569739
SNAP25 synaptosomal-associated protein, 25kDa 0.0564108
COL7A1 collagen, type VII, alpha 1 0.0533303
STAT1 signal transducer and activator of transcription 1, 91kDa 0.052974
XPO1 exportin 1 0.0508146
SOD2 superoxide dismutase 2, mitochondrial 0.046443
UBA6 ubiquitin-like modifier activating enzyme 6 0.0458756
GOLGA4 golgin A4 0.0443592
SDC4 syndecan 4 0.0433129
FAM13A family with sequence similarity 13, member A 0.0429324
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0426571
STC1 stanniocalcin 1 0.0426263
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0424652
CD109 CD109 molecule 0.0417373
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0411088
DSCAM Down syndrome cell adhesion molecule 0.040544
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0396059
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0386147
TFG TRK-fused gene 0.0385286
ELL2 elongation factor, RNA polymerase II, 2 0.038336
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0360404
TRIO trio Rho guanine nucleotide exchange factor 0.0355778
PCBP2 poly(rC) binding protein 2 0.0354143
NBAS neuroblastoma amplified sequence 0.0353352
YEATS2 YEATS domain containing 2 0.0352711
RLF rearranged L-myc fusion 0.035257
MSN moesin 0.034951
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0349015
KMT2E lysine (K)-specific methyltransferase 2E 0.0347859
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 0.0344843
USP9X ubiquitin specific peptidase 9, X-linked 0.0338245
KDM6A lysine (K)-specific demethylase 6A 0.0336535
SUCO SUN domain containing ossification factor 0.0336066
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0333815
CCNL1 cyclin L1 0.0333642
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.0330102
HELZ helicase with zinc finger 0.0323761
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0321593
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0318843
PGK1 phosphoglycerate kinase 1 0.0318062
ATP13A3 ATPase type 13A3 0.0316572
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0312543
OGA O-GlcNAcase 0.0310703
ANKRD11 ankyrin repeat domain 11 0.0306941
MCTP2 multiple C2 domains, transmembrane 2 0.0302288
SMAD3 SMAD family member 3 0.0296222
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.0296154
ADAM17 ADAM metallopeptidase domain 17 0.0293691
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0293233
RBM39 RNA binding motif protein 39 0.0292529
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.028905
RYBP RING1 and YY1 binding protein 0.028811
NCKAP1 NCK-associated protein 1 0.0285954
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0285615
WAC WW domain containing adaptor with coiled-coil 0.0284674
DIAPH3 diaphanous-related formin 3 0.0284546
ACTN4 actinin, alpha 4 0.0284291
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.0281497
ESYT2 extended synaptotagmin-like protein 2 0.0276697
TNIP1 TNFAIP3 interacting protein 1 0.027452
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.027404
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0273793
NUP58 nucleoporin 58 0.0273389
GLS2 glutaminase 2 (liver, mitochondrial) 0.0272793
CLIP4 CAP-GLY domain containing linker protein family, member 4 0.0268827
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0267505
SPRED1 sprouty-related, EVH1 domain containing 1 0.0267373
RAB8B RAB8B, member RAS oncogene family 0.0266018
ANLN anillin, actin binding protein 0.0263739
CDC73 cell division cycle 73 0.0263597
WTAP Wilms tumor 1 associated protein 0.0262157
RTN4 reticulon 4 0.0260277
IFI44 interferon-induced protein 44 0.0259699
PPME1 protein phosphatase methylesterase 1 0.0258831
ARRDC3 arrestin domain containing 3 0.0257138
GSK3B glycogen synthase kinase 3 beta 0.0254537
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.0252981
COPA coatomer protein complex, subunit alpha 0.025245
RAD23B RAD23 homolog B (S. cerevisiae) 0.0251425
ZNF654 zinc finger protein 654 0.0249855
SPAG9 sperm associated antigen 9 0.0246609
BIRC6 baculoviral IAP repeat containing 6 0.0246434
FLNB filamin B, beta 0.0242017
YME1L1 YME1-like 1 ATPase 0.024013
ZNF148 zinc finger protein 148 0.0238667
PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme 0.0238387
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0237722
BRWD3 bromodomain and WD repeat domain containing 3 0.023745
NPTN neuroplastin 0.0236179
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0233717
SMC4 structural maintenance of chromosomes 4 0.0230992
MEF2A myocyte enhancer factor 2A 0.0230734
UBE2E1 ubiquitin-conjugating enzyme E2E 1 0.0229619
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0229208
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0228247

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.353692
FTL ferritin, light polypeptide -0.137748
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.112758
TIMP3 TIMP metallopeptidase inhibitor 3 -0.109485
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.109192
HLA-B major histocompatibility complex, class I, B -0.10721
COL1A2 collagen, type I, alpha 2 -0.100972
TMSB10 thymosin beta 10 -0.0954616
FN1 fibronectin 1 -0.0952237
B2M beta-2-microglobulin -0.0913935
COL1A1 collagen, type I, alpha 1 -0.0893311
NDRG1 N-myc downstream regulated 1 -0.0767485
MT2A metallothionein 2A -0.075954
PSD3 pleckstrin and Sec7 domain containing 3 -0.0711689
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0637597
EGR1 early growth response 1 -0.0561147
PTMA prothymosin, alpha -0.0556614
IFI6 interferon, alpha-inducible protein 6 -0.0514686
HLA-A major histocompatibility complex, class I, A -0.0506808
TPM4 tropomyosin 4 -0.0482579
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0456136
TPT1 tumor protein, translationally-controlled 1 -0.0453678
TGFBI transforming growth factor, beta-induced, 68kDa -0.0453105
TPM1 tropomyosin 1 (alpha) -0.043931
ARL4C ADP-ribosylation factor-like 4C -0.041482
RPLP1 ribosomal protein, large, P1 -0.0390031
CDH13 cadherin 13 -0.0377079
RPL35A ribosomal protein L35a -0.0376944
CALR calreticulin -0.0375382
RPS8 ribosomal protein S8 -0.0372581
IFITM3 interferon induced transmembrane protein 3 -0.0371652
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0371049
PDIA3 protein disulfide isomerase family A, member 3 -0.0361758
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0343979
TFPI2 tissue factor pathway inhibitor 2 -0.0343764
S100A10 S100 calcium binding protein A10 -0.0341552
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0336936
H1-0 H1.0 linker histone -0.0331106
RRBP1 ribosome binding protein 1 -0.0320782
RPS6 ribosomal protein S6 -0.0315933
IGFBP3 insulin-like growth factor binding protein 3 -0.0312937
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0310736
COL6A2 collagen, type VI, alpha 2 -0.0309379
LOC102724023 ES1 protein homolog, mitochondrial -0.0309335
NAV1 neuron navigator 1 -0.0308891
FRMD4A FERM domain containing 4A -0.0304155
RPL37A ribosomal protein L37a -0.029938
TPI1 triosephosphate isomerase 1 -0.0289133
ENO1 enolase 1, (alpha) -0.0280931
SLIT2 slit homolog 2 (Drosophila) -0.0278575
TGFB1 transforming growth factor, beta 1 -0.0276938
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0273749
RPL31 ribosomal protein L31 -0.0272997
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0272095
S100A9 S100 calcium binding protein A9 -0.0271719
EIF1 eukaryotic translation initiation factor 1 -0.0269324
RPL34 ribosomal protein L34 -0.0267951
RPLP2 ribosomal protein, large, P2 -0.0265053
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0258919
S100A6 S100 calcium binding protein A6 -0.0250927
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0250846
RPS19 ribosomal protein S19 -0.0249949
SERF2 small EDRK-rich factor 2 -0.0246377
IER3 immediate early response 3 -0.0244711
SLC38A2 solute carrier family 38, member 2 -0.0243785
BTG1 B-cell translocation gene 1, anti-proliferative -0.0240226
RPS25 ribosomal protein S25 -0.0235311
RPL36 ribosomal protein L36 -0.0233904
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0231592
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0231501
CST3 cystatin C -0.0229633
RPS13 ribosomal protein S13 -0.0224163
RPS29 ribosomal protein S29 -0.0224154
COL6A1 collagen, type VI, alpha 1 -0.0223169
RPL28 ribosomal protein L28 -0.0221524
HLA-C major histocompatibility complex, class I, C -0.0221213
PKM pyruvate kinase, muscle -0.0220626
CAVIN1 caveolae associated protein 1 -0.0220277
COL5A3 collagen, type V, alpha 3 -0.0219889
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0219519
MMP14 matrix metallopeptidase 14 (membrane-inserted) -0.0216901
LMNA lamin A/C -0.0214341
INTS6 integrator complex subunit 6 -0.0213708
IGFBP5 insulin-like growth factor binding protein 5 -0.0209602
SHISA5 shisa family member 5 -0.0207766
RPS21 ribosomal protein S21 -0.020406
HMGA2 high mobility group AT-hook 2 -0.0202713
MAML3 mastermind-like 3 (Drosophila) -0.0201284
LOX lysyl oxidase -0.0198918
ATF4 activating transcription factor 4 -0.0197566
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0196304
NRP1 neuropilin 1 -0.0194877
RPS3 ribosomal protein S3 -0.0193099
RPS17 ribosomal protein S17 -0.0192697
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0190435
APCDD1L adenomatosis polyposis coli down-regulated 1-like -0.0188969
S100A11 S100 calcium binding protein A11 -0.0186214
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0186092
RPL12 ribosomal protein L12 -0.0185905
MAP4 microtubule-associated protein 4 -0.0183924