Cytarabine_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MKI67 marker of proliferation Ki-67 0.0805418
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0775371
BIRC2 baculoviral IAP repeat containing 2 0.0681867
TMEM41B transmembrane protein 41B 0.0648816
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0607688
RPS12 ribosomal protein S12 0.0557861
ERRFI1 ERBB receptor feedback inhibitor 1 0.0533605
MED13L mediator complex subunit 13-like 0.0511271
ANXA1 annexin A1 0.049808
DST dystonin 0.0484114
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0481508
SET SET nuclear proto-oncogene 0.0478571
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0464999
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0451063
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0437477
RPS2 ribosomal protein S2 0.0411279
YEATS2 YEATS domain containing 2 0.0401102
PDE4B phosphodiesterase 4B, cAMP-specific 0.0400839
VMP1 vacuole membrane protein 1 0.0394908
CPOX coproporphyrinogen oxidase 0.0392416
NHSL1 NHS-like 1 0.0391948
XPO1 exportin 1 0.038465
NEK7 NIMA-related kinase 7 0.0383725
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0381595
NR5A2 nuclear receptor subfamily 5, group A, member 2 0.0377914
KIF5B kinesin family member 5B 0.0375968
PUM2 pumilio RNA-binding family member 2 0.037156
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0347037
CKAP5 cytoskeleton associated protein 5 0.0345015
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0339896
SPATS2 spermatogenesis associated, serine-rich 2 0.0338755
THOC1 THO complex 1 0.0333387
EEF2 eukaryotic translation elongation factor 2 0.0329435
IL6ST interleukin 6 signal transducer 0.0313282
KIF18B kinesin family member 18B 0.0312503
PNISR PNN-interacting serine/arginine-rich protein 0.0311358
ADAM17 ADAM metallopeptidase domain 17 0.0309333
DIAPH3 diaphanous-related formin 3 0.0308631
BIRC3 baculoviral IAP repeat containing 3 0.0308081
ANKRD12 ankyrin repeat domain 12 0.0307563
NCKAP1 NCK-associated protein 1 0.0302928
CIP2A cellular inhibitor of PP2A 0.0302138
PDGFC platelet derived growth factor C 0.0299321
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0297052
RPS7 ribosomal protein S7 0.0287852
TNPO1 transportin 1 0.0287549
ECT2 epithelial cell transforming 2 0.0270803
SBF2 SET binding factor 2 0.0268734
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 0.0268733
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 0.0264365
ERBB4 erb-b2 receptor tyrosine kinase 4 0.026207
RPS3 ribosomal protein S3 0.0255652
HSPA4 heat shock 70kDa protein 4 0.0255569
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 0.0252834
NIPBL Nipped-B homolog (Drosophila) 0.0251529
MSH2 mutS homolog 2 0.0249137
MIS18BP1 MIS18 binding protein 1 0.0243824
PA2G4 proliferation-associated 2G4, 38kDa 0.0243125
YES1 YES proto-oncogene 1, Src family tyrosine kinase 0.0242287
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0239261
RAB6A RAB6A, member RAS oncogene family 0.0238513
ANKIB1 ankyrin repeat and IBR domain containing 1 0.023789
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 0.0236274
FEZ2 fasciculation and elongation protein zeta 2 (zygin II) 0.0235249
GPBP1 GC-rich promoter binding protein 1 0.0235115
MMP12 matrix metallopeptidase 12 0.0235029
RNF13 ring finger protein 13 0.0234387
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0233883
STAG2 stromal antigen 2 0.0232358
HLTF helicase-like transcription factor 0.0232273
MGAT4C MGAT4 family, member C 0.0231471
WDR43 WD repeat domain 43 0.0230929
CCDC14 coiled-coil domain containing 14 0.0230666
ELF2 E74-like factor 2 (ets domain transcription factor) 0.022878
GASK1B golgi associated kinase 1B 0.0226352
NUP153 nucleoporin 153kDa 0.0224656
CEP192 centrosomal protein 192kDa 0.0224629
DPYD dihydropyrimidine dehydrogenase 0.0224049
ANKRD36 ankyrin repeat domain 36 0.0222256
ETNK1 ethanolamine kinase 1 0.0221989
ZNF292 zinc finger protein 292 0.0221385
CDK19 cyclin-dependent kinase 19 0.0221315
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.022128
TPX2 TPX2, microtubule-associated 0.0221243
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0216828
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0216339
BRWD3 bromodomain and WD repeat domain containing 3 0.0212598
RIMKLB ribosomal modification protein rimK-like family member B 0.0211493
SFXN1 sideroflexin 1 0.0211392
HDGF hepatoma-derived growth factor 0.0211106
RASA2 RAS p21 protein activator 2 0.0210103
PNN pinin, desmosome associated protein 0.0209966
H1-4 H1.4 linker histone, cluster member 0.0209289
SMC4 structural maintenance of chromosomes 4 0.0209171
R3HDM1 R3H domain containing 1 0.0209004
CEP170 centrosomal protein 170kDa 0.020896
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.0205628
IFIH1 interferon induced with helicase C domain 1 0.0203664
NDC80 NDC80 kinetochore complex component 0.0203492
FANCL Fanconi anemia, complementation group L 0.0202875

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.188405
VIM vimentin -0.178864
TMSB10 thymosin beta 10 -0.148037
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.147233
NLGN1 neuroligin 1 -0.127244
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.118272
RAB7A RAB7A, member RAS oncogene family -0.112452
HMGA2 high mobility group AT-hook 2 -0.0845213
EGR1 early growth response 1 -0.0813336
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0735696
FTL ferritin, light polypeptide -0.0720545
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0709382
PCBP2 poly(rC) binding protein 2 -0.0640507
ATP5F1B ATP synthase F1 subunit beta -0.0615732
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0596786
ACTG1 actin gamma 1 -0.0589809
SLC38A2 solute carrier family 38, member 2 -0.0582274
INTS6 integrator complex subunit 6 -0.0564318
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0552611
TPI1 triosephosphate isomerase 1 -0.0541404
DDIT3 DNA-damage-inducible transcript 3 -0.05308
LOC112694756 uncharaterized LOC112694756 -0.0518638
PFN1 profilin 1 -0.0506089
ADIPOR2 adiponectin receptor 2 -0.0498599
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0491518
RPLP0 ribosomal protein, large, P0 -0.0485762
HMGA1 high mobility group AT-hook 1 -0.0483478
NABP1 nucleic acid binding protein 1 -0.046633
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0459051
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.044347
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0436208
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.043485
ZNF804A zinc finger protein 804A -0.0432531
AFF4 AF4/FMR2 family, member 4 -0.0424264
VDAC1 voltage-dependent anion channel 1 -0.0420846
CCND1 cyclin D1 -0.041896
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0416063
FTH1 ferritin, heavy polypeptide 1 -0.0405285
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0390853
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0376367
TUBA1B tubulin, alpha 1b -0.0371769
HLA-A major histocompatibility complex, class I, A -0.0367476
LRRC23 leucine rich repeat containing 23 -0.0363097
LOC102724023 ES1 protein homolog, mitochondrial -0.0353604
CELF2 CUGBP, Elav-like family member 2 -0.0352018
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0347938
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0347634
DKK1 dickkopf WNT signaling pathway inhibitor 1 -0.0346878
HSPB1 heat shock 27kDa protein 1 -0.0345329
TTC3 tetratricopeptide repeat domain 3 -0.0343223
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 -0.0336034
YBX1 Y box binding protein 1 -0.0333538
CCN2 cellular communication network factor 2 -0.0327457
SPDYA speedy/RINGO cell cycle regulator family member A -0.0320276
RPL35A ribosomal protein L35a -0.031974
TSC22D2 TSC22 domain family, member 2 -0.0318601
GOLGB1 golgin B1 -0.031352
GCG glucagon -0.0308816
MAP1B microtubule-associated protein 1B -0.0305271
RPL27A ribosomal protein L27a -0.029502
TMBIM6 transmembrane BAX inhibitor motif containing 6 -0.0293845
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.029226
ATF6 activating transcription factor 6 -0.0291437
SETX senataxin -0.0291066
RPLP1 ribosomal protein, large, P1 -0.0290531
POTEF POTE ankyrin domain family, member F -0.0290085
ANKRD17 ankyrin repeat domain 17 -0.028708
SCFD1 sec1 family domain containing 1 -0.0282086
TBCA tubulin folding cofactor A -0.0279719
LDHA lactate dehydrogenase A -0.0277718
UBC ubiquitin C -0.0271687
PCF11 PCF11 cleavage and polyadenylation factor subunit -0.0267397
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0266377
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0262776
RNF213 ring finger protein 213 -0.0261969
H1-0 H1.0 linker histone -0.0261169
CMIP c-Maf inducing protein -0.0260982
EEF1G eukaryotic translation elongation factor 1 gamma -0.0259233
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0253948
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.0250065
RPS24 ribosomal protein S24 -0.0250038
SKIL SKI-like proto-oncogene -0.0240404
MSRB3 methionine sulfoxide reductase B3 -0.0239182
EHBP1 EH domain binding protein 1 -0.0237461
PPP1R10 protein phosphatase 1, regulatory subunit 10 -0.0236502
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0235388
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0233197
VAT1 vesicle amine transport 1 -0.0232884
IARS1 isoleucyl-tRNA synthetase 1 -0.023234
PDE4D phosphodiesterase 4D, cAMP-specific -0.0230985
ACLY ATP citrate lyase -0.0226425
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.022458
MORF4L2 mortality factor 4 like 2 -0.0224281
HDLBP high density lipoprotein binding protein -0.0222562
ANKHD1 ankyrin repeat and KH domain containing 1 -0.022204
SLC38A1 solute carrier family 38, member 1 -0.0221663
CALR calreticulin -0.0217825
CANX calnexin -0.0217391
FXR1 fragile X mental retardation, autosomal homolog 1 -0.0216013
BCL6 B-cell CLL/lymphoma 6 -0.0210154