Cytarabine_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FNDC3B fibronectin type III domain containing 3B 0.137519
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0931844
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0821489
LRMDA leucine rich melanocyte differentiation associated 0.0805641
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0715959
LRRTM4 leucine rich repeat transmembrane neuronal 4 0.0704233
SLC38A2 solute carrier family 38, member 2 0.0610367
EEF2 eukaryotic translation elongation factor 2 0.0576226
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0554493
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 0.048519
EPS8 epidermal growth factor receptor pathway substrate 8 0.0474693
PTBP3 polypyrimidine tract binding protein 3 0.0443029
ZFP36L1 ZFP36 ring finger protein-like 1 0.0437042
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.0404149
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0387605
CCL20 chemokine (C-C motif) ligand 20 0.0380431
UBA6 ubiquitin-like modifier activating enzyme 6 0.0373803
DTNA dystrobrevin, alpha 0.0367149
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0366154
CDK19 cyclin-dependent kinase 19 0.0359906
AHR aryl hydrocarbon receptor 0.0353624
BHLHE40 basic helix-loop-helix family, member e40 0.0353428
FAT1 FAT atypical cadherin 1 0.0343044
SOX5 SRY (sex determining region Y)-box 5 0.0343016
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0339053
BIRC3 baculoviral IAP repeat containing 3 0.0331552
MAML2 mastermind-like 2 (Drosophila) 0.0331509
FMNL2 formin-like 2 0.0327419
KRT8 keratin 8, type II 0.0325751
GMDS GDP-mannose 4,6-dehydratase 0.0319711
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0318245
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0317222
ZNF292 zinc finger protein 292 0.0310862
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.03108
KIF1B kinesin family member 1B 0.0307942
PLIN2 perilipin 2 0.0306759
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 0.0298558
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 0.0290402
SAMD4A sterile alpha motif domain containing 4A 0.0288625
DDIT4 DNA-damage-inducible transcript 4 0.0274665
ARHGAP12 Rho GTPase activating protein 12 0.0268916
SMAD4 SMAD family member 4 0.0265668
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0260769
POTEF POTE ankyrin domain family, member F 0.0259912
SBF2 SET binding factor 2 0.0257711
APOA2 apolipoprotein A-II 0.0256628
RTN4 reticulon 4 0.02561
KIAA1217 KIAA1217 0.0254684
LCOR ligand dependent nuclear receptor corepressor 0.0254459
PTCHD4 patched domain containing 4 0.0245042
ATP13A3 ATPase type 13A3 0.0243632
ARHGAP9 Rho GTPase activating protein 9 0.0243176
PUM1 pumilio RNA-binding family member 1 0.0241886
PTBP2 polypyrimidine tract binding protein 2 0.0241559
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0241426
FOXO1 forkhead box O1 0.0236366
THOC2 THO complex 2 0.023543
DST dystonin 0.0232938
STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 0.0229761
GRK3 G protein-coupled receptor kinase 3 0.022898
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0226313
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like 0.0224811
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0221402
ISG15 ISG15 ubiquitin-like modifier 0.0218492
PRELID2 PRELI domain containing 2 0.0218321
RNF149 ring finger protein 149 0.0217915
RPL3 ribosomal protein L3 0.0214273
KDM7A lysine (K)-specific demethylase 7A 0.0213757
VCL vinculin 0.0212516
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.021238
RB1CC1 RB1-inducible coiled-coil 1 0.0212096
AUH AU RNA binding protein/enoyl-CoA hydratase 0.0211958
YAP1 Yes-associated protein 1 0.0211538
PUM2 pumilio RNA-binding family member 2 0.0211511
LRRC1 leucine rich repeat containing 1 0.0210303
FNIP1 folliculin interacting protein 1 0.0209183
KDM6A lysine (K)-specific demethylase 6A 0.0208613
HELZ helicase with zinc finger 0.0207844
METTL15 methyltransferase like 15 0.0206498
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0206308
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0205354
MYO1B myosin IB 0.020302
SREK1 splicing regulatory glutamine/lysine-rich protein 1 0.0202216
USP3 ubiquitin specific peptidase 3 0.0200434
SORBS1 sorbin and SH3 domain containing 1 0.019857
CHKA choline kinase alpha 0.0198448
NCKAP1 NCK-associated protein 1 0.019766
FRK fyn-related Src family tyrosine kinase 0.0195287
CRLS1 cardiolipin synthase 1 0.0194211
ARL5B ADP-ribosylation factor-like 5B 0.0187522
DIAPH3 diaphanous-related formin 3 0.0183957
LPGAT1 lysophosphatidylglycerol acyltransferase 1 0.0181071
GOLGA4 golgin A4 0.0180711
ADGRG6 adhesion G protein-coupled receptor G6 0.0180378
PFN1 profilin 1 0.0179793
ZC3H11A zinc finger CCCH-type containing 11A 0.0179784
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.0178804
CLIC4 chloride intracellular channel 4 0.0177616
ATAD2 ATPase family, AAA domain containing 2 0.0176808
HMGA1 high mobility group AT-hook 1 0.0176047

decreased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 -0.195487
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.177437
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.176383
ERRFI1 ERBB receptor feedback inhibitor 1 -0.114507
TPT1 tumor protein, translationally-controlled 1 -0.108241
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0821406
GPC6 glypican 6 -0.0816503
RPLP1 ribosomal protein, large, P1 -0.0748256
LOC112694756 uncharaterized LOC112694756 -0.0726282
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0687057
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0652501
RPS24 ribosomal protein S24 -0.0646427
C3 complement component 3 -0.0620806
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0614777
RBM39 RNA binding motif protein 39 -0.0613541
RPLP0 ribosomal protein, large, P0 -0.060247
SMAD3 SMAD family member 3 -0.0588051
CP ceruloplasmin (ferroxidase) -0.0577235
RRBP1 ribosome binding protein 1 -0.0537794
UGDH UDP-glucose 6-dehydrogenase -0.052405
KDM3A lysine (K)-specific demethylase 3A -0.0521064
TRIO trio Rho guanine nucleotide exchange factor -0.0512519
GPC3 glypican 3 -0.0506059
NKD1 naked cuticle homolog 1 (Drosophila) -0.0500649
RPS6 ribosomal protein S6 -0.0497105
PEG3 paternally expressed 3 -0.0494981
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 -0.0474987
EIF3A eukaryotic translation initiation factor 3, subunit A -0.047211
FTL ferritin, light polypeptide -0.0467107
CANX calnexin -0.0449243
RPS19 ribosomal protein S19 -0.0439504
EHBP1 EH domain binding protein 1 -0.043917
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0433279
DNAH17 dynein, axonemal, heavy chain 17 -0.0428727
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0423683
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0418747
RPL38 ribosomal protein L38 -0.0416754
ZMYND8 zinc finger, MYND-type containing 8 -0.0416258
STAU1 staufen double-stranded RNA binding protein 1 -0.041607
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0415315
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0406015
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0405743
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0405339
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0399873
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0398686
DLC1 DLC1 Rho GTPase activating protein -0.0396761
RPL37A ribosomal protein L37a -0.0385229
PDLIM5 PDZ and LIM domain 5 -0.0383752
HDLBP high density lipoprotein binding protein -0.0379733
FOXP1 forkhead box P1 -0.0378403
NINL ninein-like -0.0376214
IGFBP1 insulin-like growth factor binding protein 1 -0.0369394
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) -0.0362884
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0362647
FUS FUS RNA binding protein -0.0361001
OSBPL10 oxysterol binding protein-like 10 -0.0358836
PERP PERP, TP53 apoptosis effector -0.0352945
RPL37 ribosomal protein L37 -0.0352191
RPS8 ribosomal protein S8 -0.0349294
RPS27A ribosomal protein S27a -0.0347977
IGF1R insulin-like growth factor 1 receptor -0.0346385
ABTB3 ankyrin repeat and BTB domain containing 3 -0.0344223
ARHGAP5 Rho GTPase activating protein 5 -0.0343331
GK glycerol kinase -0.0339822
SQSTM1 sequestosome 1 -0.0339384
SOD2 superoxide dismutase 2, mitochondrial -0.033551
ZFHX3 zinc finger homeobox 3 -0.033302
LCN2 lipocalin 2 -0.0332545
INSR insulin receptor -0.0331273
TBC1D22A TBC1 domain family, member 22A -0.0329826
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0328807
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 -0.0327412
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0326903
EGR1 early growth response 1 -0.0320365
MT2A metallothionein 2A -0.0319388
GCLC glutamate-cysteine ligase, catalytic subunit -0.0319047
A2M alpha-2-macroglobulin -0.0319034
RAI14 retinoic acid induced 14 -0.0318946
NPAS2 neuronal PAS domain protein 2 -0.0316667
FAM107B family with sequence similarity 107, member B -0.0314501
HM13 histocompatibility (minor) 13 -0.0313922
IER3 immediate early response 3 -0.0313624
TFRC transferrin receptor -0.0313327
TRIM26 tripartite motif containing 26 -0.0311774
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0309149
AFF1 AF4/FMR2 family, member 1 -0.0307335
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0305716
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0305644
NCOA1 nuclear receptor coactivator 1 -0.0303737
RPL13A ribosomal protein L13a -0.0303252
CTSB cathepsin B -0.030301
TXNRD1 thioredoxin reductase 1 -0.0302514
TULP4 tubby like protein 4 -0.0301488
EPAS1 endothelial PAS domain protein 1 -0.0295929
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0294113
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0293451
SKI SKI proto-oncogene -0.0292179
RPL34 ribosomal protein L34 -0.028211
RPL35A ribosomal protein L35a -0.0281743
VDAC1 voltage-dependent anion channel 1 -0.0275955