Cytarabine_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Cytarabine perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Cytarabine_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NAMPT nicotinamide phosphoribosyltransferase 0.170894
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.148389
EFNA5 ephrin-A5 0.138686
CXCL8 chemokine (C-X-C motif) ligand 8 0.135721
NAP1L1 nucleosome assembly protein 1-like 1 0.087242
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.079369
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0790033
KMT2E lysine (K)-specific methyltransferase 2E 0.0782916
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0745665
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0738399
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0728617
FAM13A family with sequence similarity 13, member A 0.0726611
TRIO trio Rho guanine nucleotide exchange factor 0.0710913
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0710631
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.070223
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0691596
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0691451
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0690604
RPS6 ribosomal protein S6 0.0685379
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0679579
LIMCH1 LIM and calponin homology domains 1 0.0656109
OGA O-GlcNAcase 0.0648748
ASPH aspartate beta-hydroxylase 0.0646856
NEK7 NIMA-related kinase 7 0.0640353
ELL2 elongation factor, RNA polymerase II, 2 0.0595665
MCL1 myeloid cell leukemia 1 0.0593067
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0584449
RNF145 ring finger protein 145 0.0578457
UBA6 ubiquitin-like modifier activating enzyme 6 0.0567439
RTN4 reticulon 4 0.0560037
PDIA6 protein disulfide isomerase family A, member 6 0.0558135
WSB1 WD repeat and SOCS box containing 1 0.0555948
FNDC3B fibronectin type III domain containing 3B 0.0547987
EEF2 eukaryotic translation elongation factor 2 0.0536116
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0533863
KMT2C lysine (K)-specific methyltransferase 2C 0.052967
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0525385
NCKAP1 NCK-associated protein 1 0.051471
NUP58 nucleoporin 58 0.0507643
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0505658
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0504065
SPAG9 sperm associated antigen 9 0.049978
FLNB filamin B, beta 0.0498743
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0495007
HELZ helicase with zinc finger 0.0494589
ZNF292 zinc finger protein 292 0.0491137
TFPI2 tissue factor pathway inhibitor 2 0.0490837
EIF4A1 eukaryotic translation initiation factor 4A1 0.0490386
TPD52 tumor protein D52 0.0474909
SET SET nuclear proto-oncogene 0.0467995
MXI1 MAX interactor 1, dimerization protein 0.046488
KYNU kynureninase 0.0464802
ERRFI1 ERBB receptor feedback inhibitor 1 0.0463685
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0460292
NGLY1 N-glycanase 1 0.0459929
AGFG1 ArfGAP with FG repeats 1 0.0456754
CCDC88A coiled-coil domain containing 88A 0.0453062
CTSC cathepsin C 0.0443795
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.044314
PDGFA platelet-derived growth factor alpha polypeptide 0.0442101
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0438371
MATR3 matrin 3 0.0428678
KTN1 kinectin 1 (kinesin receptor) 0.0423364
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.0422464
FMNL2 formin-like 2 0.0414221
MFF mitochondrial fission factor 0.0410475
BIRC6 baculoviral IAP repeat containing 6 0.040973
RICTOR RPTOR independent companion of MTOR, complex 2 0.0409222
PUM2 pumilio RNA-binding family member 2 0.0408413
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0405442
ADAM17 ADAM metallopeptidase domain 17 0.0402597
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0400848
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0392937
TMX4 thioredoxin-related transmembrane protein 4 0.0392589
CHD1L chromodomain helicase DNA binding protein 1-like 0.0389164
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0386787
USP34 ubiquitin specific peptidase 34 0.0385566
ESYT2 extended synaptotagmin-like protein 2 0.0385223
RPS12 ribosomal protein S12 0.0381638
RAI1 retinoic acid induced 1 0.0374853
CEP170 centrosomal protein 170kDa 0.0374823
ATP13A3 ATPase type 13A3 0.0373997
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0373418
XPO1 exportin 1 0.0367476
ZNF638 zinc finger protein 638 0.0365666
PRRC2C proline-rich coiled-coil 2C 0.0362171
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0360562
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0358448
USP3 ubiquitin specific peptidase 3 0.0355909
COL4A6 collagen, type IV, alpha 6 0.0353994
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0353396
EIF1 eukaryotic translation initiation factor 1 0.0353213
PSD3 pleckstrin and Sec7 domain containing 3 0.0352086
OLA1 Obg-like ATPase 1 0.0350398
RPL12 ribosomal protein L12 0.034934
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0347991
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0347046
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.034692
MED13 mediator complex subunit 13 0.0346225
PHF20 PHD finger protein 20 0.0344578

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.20063
P4HB prolyl 4-hydroxylase, beta polypeptide -0.105067
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0891503
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.0641683
ADGRD1 adhesion G protein-coupled receptor D1 -0.0625836
CDH13 cadherin 13 -0.0613685
FTH1 ferritin, heavy polypeptide 1 -0.060947
PDE4D phosphodiesterase 4D, cAMP-specific -0.0573259
LDHA lactate dehydrogenase A -0.056904
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0554049
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.05366
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0535152
WARS1 tryptophanyl-tRNA synthetase 1 -0.0503978
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0466344
RPL31 ribosomal protein L31 -0.0451462
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) -0.042693
HLA-B major histocompatibility complex, class I, B -0.0386326
GDA guanine deaminase -0.0377322
LOC112694756 uncharaterized LOC112694756 -0.0355747
COL5A2 collagen, type V, alpha 2 -0.0346419
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0345267
RIGI RNA sensor RIG-I -0.0321674
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.031971
OASL 2'-5'-oligoadenylate synthetase-like -0.03176
PDE10A phosphodiesterase 10A -0.0311184
TPT1 tumor protein, translationally-controlled 1 -0.0307921
ANTXR1 anthrax toxin receptor 1 -0.030312
EGR1 early growth response 1 -0.0302387
RPL38 ribosomal protein L38 -0.0298401
INTS6 integrator complex subunit 6 -0.0294329
NCOA7 nuclear receptor coactivator 7 -0.0287566
EXT1 exostosin glycosyltransferase 1 -0.0285116
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0285076
P3H2 prolyl 3-hydroxylase 2 -0.0276216
RPH3AL rabphilin 3A-like (without C2 domains) -0.0274892
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0268272
ZNFX1 zinc finger, NFX1-type containing 1 -0.0267242
VDAC1 voltage-dependent anion channel 1 -0.0267017
RPL13A ribosomal protein L13a -0.0266448
RHOB ras homolog family member B -0.0266053
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0261965
RGS2 regulator of G-protein signaling 2 -0.0259345
NRCAM neuronal cell adhesion molecule -0.0249428
TMSB10 thymosin beta 10 -0.0248063
ARF1 ADP-ribosylation factor 1 -0.0240334
ATP5F1B ATP synthase F1 subunit beta -0.0236314
IFIH1 interferon induced with helicase C domain 1 -0.0231716
CTIF CBP80/20-dependent translation initiation factor -0.0231574
SLC39A8 solute carrier family 39 (zinc transporter), member 8 -0.0229494
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.0224925
AEBP2 AE binding protein 2 -0.0223685
SOD2 superoxide dismutase 2, mitochondrial -0.0219634
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0217248
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0217068
IGFBP3 insulin-like growth factor binding protein 3 -0.021662
HLA-A major histocompatibility complex, class I, A -0.0215701
PBX1 pre-B-cell leukemia homeobox 1 -0.0214603
SQSTM1 sequestosome 1 -0.0214028
RPS24 ribosomal protein S24 -0.021124
IGF1R insulin-like growth factor 1 receptor -0.0207449
CD44 CD44 molecule (Indian blood group) -0.0207209
KIAA0825 KIAA0825 -0.0205197
TUBB4B tubulin, beta 4B class IVb -0.0201293
HDAC8 histone deacetylase 8 -0.0196114
ACTG1 actin gamma 1 -0.0195453
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0193135
CREB3L2 cAMP responsive element binding protein 3-like 2 -0.0190918
IGF2 insulin-like growth factor 2 -0.0188642
NCKAP5 NCK-associated protein 5 -0.0186369
RPLP1 ribosomal protein, large, P1 -0.0186103
VCL vinculin -0.018347
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0179065
SAMD4A sterile alpha motif domain containing 4A -0.0178795
EEF1G eukaryotic translation elongation factor 1 gamma -0.0178701
CTSD cathepsin D -0.0177921
PDE1A phosphodiesterase 1A, calmodulin-dependent -0.0177387
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0176605
ENO2 enolase 2 (gamma, neuronal) -0.0175984
EPC2 enhancer of polycomb homolog 2 (Drosophila) -0.017407
CDK6 cyclin-dependent kinase 6 -0.0173007
JUN jun proto-oncogene -0.0172734
TBXT T-box transcription factor T -0.0170877
PALLD palladin, cytoskeletal associated protein -0.017021
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0169549
NCOR2 nuclear receptor corepressor 2 -0.0168569
MAML3 mastermind-like 3 (Drosophila) -0.0167679
CMIP c-Maf inducing protein -0.0166792
UNC5D unc-5 homolog D (C. elegans) -0.0166266
PRRC2B proline-rich coiled-coil 2B -0.0165336
RBBP6 retinoblastoma binding protein 6 -0.0162224
RRBP1 ribosome binding protein 1 -0.0162149
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0162016
HMGA1 high mobility group AT-hook 1 -0.0161331
GOLGB1 golgin B1 -0.0160707
HLA-E major histocompatibility complex, class I, E -0.0159617
MYO1E myosin IE -0.0159531
BLTP2 bridge-like lipid transfer protein family member 2 -0.0159234
STK17A serine/threonine kinase 17a -0.015822
GNS glucosamine (N-acetyl)-6-sulfatase -0.0157927
SVIL supervillin -0.0157917