D-542MG Gene Set

Dataset GDSC Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
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Genes

225 genes with high or low expression in D-542MG relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
SLN sarcolipin 3.03668
NDP Norrie disease (pseudoglioma) 3.0064
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 2.62374
CA6 carbonic anhydrase VI 2.50975
HAB1 B1 for mucin 2.41203
SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 2.40609
APOO apolipoprotein O 2.35399
ARSF arylsulfatase F 2.33095
ANGPTL2 angiopoietin-like 2 2.13775
JAM2 junctional adhesion molecule 2 2.05644
EML1 echinoderm microtubule associated protein like 1 2.02313
PLA2G5 phospholipase A2, group V 2.02029
SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 1.99099
RBBP7 retinoblastoma binding protein 7 1.99061
MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow 1.97195
BTG3 BTG family, member 3 1.96428
CALD1 caldesmon 1 1.94551
ARSJ arylsulfatase family, member J 1.93383
MCHR1 melanin-concentrating hormone receptor 1 1.90748
ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 1.90587
BGLAP bone gamma-carboxyglutamate (gla) protein 1.87823
MEOX2 mesenchyme homeobox 2 1.87057
SAP30 Sin3A-associated protein, 30kDa 1.85914
AQP1 aquaporin 1 (Colton blood group) 1.85045
LBP lipopolysaccharide binding protein 1.84648
HHIPL2 HHIP-like 2 1.82094
MEF2A myocyte enhancer factor 2A 1.81642
ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 1.80528
PRUNE2 prune homolog 2 (Drosophila) 1.8003
PDK3 pyruvate dehydrogenase kinase, isozyme 3 1.78859
SEPT4 septin 4 1.76816
PHTF1 putative homeodomain transcription factor 1 1.74887
EFHC2 EF-hand domain (C-terminal) containing 2 1.7299
PHTF2 putative homeodomain transcription factor 2 1.72102
ENO1 enolase 1, (alpha) 1.71387
SYNC syncoilin, intermediate filament protein 1.71285
PIPOX pipecolic acid oxidase 1.71162
VAMP4 vesicle-associated membrane protein 4 1.70512
TGFA transforming growth factor, alpha 1.69519
RIT1 Ras-like without CAAX 1 1.68328
NID1 nidogen 1 1.66708
BACE1 beta-site APP-cleaving enzyme 1 1.66631
FBXL5 F-box and leucine-rich repeat protein 5 1.66167
PRDX4 peroxiredoxin 4 1.65201
ATXN1 ataxin 1 1.63221
PCYOX1 prenylcysteine oxidase 1 1.61918
GUSB glucuronidase, beta 1.61389
IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 1.61381
THY1 Thy-1 cell surface antigen 1.60819
MXRA5 matrix-remodelling associated 5 1.60638
BAALC brain and acute leukemia, cytoplasmic 1.60347
DKK3 dickkopf WNT signaling pathway inhibitor 3 1.59567
LAMP2 lysosomal-associated membrane protein 2 1.59438
DCAF6 DDB1 and CUL4 associated factor 6 1.5928
PIAS2 protein inhibitor of activated STAT, 2 1.58992
FZD7 frizzled class receptor 7 1.57533
PHKG1 phosphorylase kinase, gamma 1 (muscle) 1.57422
RHCE Rh blood group, CcEe antigens 1.56862
SATB2 SATB homeobox 2 1.56431
TGM5 transglutaminase 5 1.55918
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 1.55366
CALU calumenin 1.55172
NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 1.55159
ZNF385D zinc finger protein 385D 1.54622
DIXDC1 DIX domain containing 1 1.53929
IGFBP5 insulin-like growth factor binding protein 5 1.53905
ANGPT2 angiopoietin 2 1.52838
AZIN1 antizyme inhibitor 1 1.52484
COL1A2 collagen, type I, alpha 2 1.52381
SSPN sarcospan 1.5236
NCAPG2 non-SMC condensin II complex, subunit G2 1.522
SCARA3 scavenger receptor class A, member 3 1.51744
PEA15 phosphoprotein enriched in astrocytes 15 1.51588
POU3F3 POU class 3 homeobox 3 1.50929
INSIG2 insulin induced gene 2 1.47939
C1QL1 complement component 1, q subcomponent-like 1 1.47802
SFRP1 secreted frizzled-related protein 1 1.47762
EXT2 exostosin glycosyltransferase 2 1.47677
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 1.47344
TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa 1.47267
LAPTM4A lysosomal protein transmembrane 4 alpha 1.47046
CP ceruloplasmin (ferroxidase) 1.46775
SULF1 sulfatase 1 1.46769
FOXF1 forkhead box F1 1.46065
RHD Rh blood group, D antigen 1.45791
CA9 carbonic anhydrase IX 1.45578
OR2C1 olfactory receptor, family 2, subfamily C, member 1 1.45539
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8) 1.45305
POU3F2 POU class 3 homeobox 2 1.44952
TMEM100 transmembrane protein 100 1.44756
KCTD9 potassium channel tetramerization domain containing 9 1.44511
FER1L4 fer-1-like family member 4, pseudogene (functional) 1.44335
SPARCL1 SPARC-like 1 (hevin) 1.44268
RHEB Ras homolog enriched in brain 1.4408
RGS2 regulator of G-protein signaling 2 1.43822
NUPL2 nucleoporin like 2 1.43403
CHL1 cell adhesion molecule L1-like 1.4318
CBR3 carbonyl reductase 3 1.42993
TACC1 transforming, acidic coiled-coil containing protein 1 1.42414
GOLIM4 golgi integral membrane protein 4 1.42154

low expression

Symbol Name Standardized Value
CDK3 cyclin-dependent kinase 3 -3.06406
LSP1 lymphocyte-specific protein 1 -2.87065
IPO4 importin 4 -2.78256
LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) -2.61009
KIAA0556 KIAA0556 -2.60139
TUFM Tu translation elongation factor, mitochondrial -2.57167
WDR43 WD repeat domain 43 -2.5418
TPK1 thiamin pyrophosphokinase 1 -2.49255
CNTNAP2 contactin associated protein-like 2 -2.43727
RPS7 ribosomal protein S7 -2.39261
SRSF5 serine/arginine-rich splicing factor 5 -2.39245
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -2.38766
TSFM Ts translation elongation factor, mitochondrial -2.37494
LRRC47 leucine rich repeat containing 47 -2.33067
CEP104 centrosomal protein 104kDa -2.32057
KLHL29 kelch-like family member 29 -2.29511
THOC5 THO complex 5 -2.26511
KLK5 kallikrein-related peptidase 5 -2.24425
LTB4R leukotriene B4 receptor -2.21345
BRAP BRCA1 associated protein -2.20655
ZNF267 zinc finger protein 267 -2.20534
ACO2 aconitase 2, mitochondrial -2.17607
SCTR secretin receptor -2.14474
SLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2 -2.1413
TES testin LIM domain protein -2.09671
HNRNPL heterogeneous nuclear ribonucleoprotein L -2.08194
EPN1 epsin 1 -2.07552
TNRC6B trinucleotide repeat containing 6B -2.06608
STEAP4 STEAP family member 4 -2.01664
TSSC1 tumor suppressing subtransferable candidate 1 -2.01061
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 -1.99596
GALT galactose-1-phosphate uridylyltransferase -1.97836
MAP3K9 mitogen-activated protein kinase kinase kinase 9 -1.96527
HPN hepsin -1.96038
RANBP17 RAN binding protein 17 -1.95405
LRRC8D leucine rich repeat containing 8 family, member D -1.92953
PARP8 poly (ADP-ribose) polymerase family, member 8 -1.92915
LAMC3 laminin, gamma 3 -1.92164
C10ORF2 chromosome 10 open reading frame 2 -1.90089
MTG1 mitochondrial ribosome-associated GTPase 1 -1.87994
HTATIP2 HIV-1 Tat interactive protein 2, 30kDa -1.86504
PA2G4 proliferation-associated 2G4, 38kDa -1.85913
KRT18 keratin 18, type I -1.84041
RPS29 ribosomal protein S29 -1.83434
ICAM5 intercellular adhesion molecule 5, telencephalin -1.82959
ACADSB acyl-CoA dehydrogenase, short/branched chain -1.82207
MSR1 macrophage scavenger receptor 1 -1.81884
RPS19 ribosomal protein S19 -1.81004
TESPA1 thymocyte expressed, positive selection associated 1 -1.80562
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 -1.80538
TREM2 triggering receptor expressed on myeloid cells 2 -1.78045
CSNK1D casein kinase 1, delta -1.77983
TP73-AS1 TP73 antisense RNA 1 -1.77488
PRPF4B pre-mRNA processing factor 4B -1.76224
AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) -1.76184
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 -1.75934
TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase -1.75406
ZNF408 zinc finger protein 408 -1.75029
MDM4 MDM4, p53 regulator -1.74543
DCAF4 DDB1 and CUL4 associated factor 4 -1.742
MRPS2 mitochondrial ribosomal protein S2 -1.73925
CHORDC1 cysteine and histidine-rich domain (CHORD) containing 1 -1.73786
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa -1.71494
EPRS glutamyl-prolyl-tRNA synthetase -1.71146
GMDS GDP-mannose 4,6-dehydratase -1.70664
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced -1.70592
ATF4 activating transcription factor 4 -1.7033
ACIN1 apoptotic chromatin condensation inducer 1 -1.70033
CLEC4A C-type lectin domain family 4, member A -1.69642
RAB11FIP1 RAB11 family interacting protein 1 (class I) -1.69178
TIMM9 translocase of inner mitochondrial membrane 9 homolog (yeast) -1.68292
SGPL1 sphingosine-1-phosphate lyase 1 -1.67958
PMP2 peripheral myelin protein 2 -1.65652
SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 -1.64906
LYRM4 LYR motif containing 4 -1.6477
ZNF33B zinc finger protein 33B -1.64597
SMYD5 SMYD family member 5 -1.64047
MKRN1 makorin ring finger protein 1 -1.6371
ANGEL1 angel homolog 1 (Drosophila) -1.62363
RNASEH1 ribonuclease H1 -1.62241
MTMR3 myotubularin related protein 3 -1.60682
RNF31 ring finger protein 31 -1.58961
FANCE Fanconi anemia, complementation group E -1.58757
RPS9 ribosomal protein S9 -1.58
TXN2 thioredoxin 2 -1.57968
EDC3 enhancer of mRNA decapping 3 -1.56843
UBAP2 ubiquitin associated protein 2 -1.56737
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 -1.56391
NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit -1.56366
RSL1D1 ribosomal L1 domain containing 1 -1.55922
FAM175B family with sequence similarity 175, member B -1.55914
ZNF516 zinc finger protein 516 -1.55839
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 -1.55582
RPL3 ribosomal protein L3 -1.5383
MRPL44 mitochondrial ribosomal protein L44 -1.5341
PNMT phenylethanolamine N-methyltransferase -1.53154
TUG1 taurine up-regulated 1 (non-protein coding) -1.52912
ADSL adenylosuccinate lyase -1.52298
TCOF1 Treacher Collins-Franceschetti syndrome 1 -1.52139
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) -1.50984
TCHH trichohyalin -1.49824
HSPA6 heat shock 70kDa protein 6 (HSP70B') -1.49106
MKL1 megakaryoblastic leukemia (translocation) 1 -1.48836
TSHB thyroid stimulating hormone, beta -1.48007
HIST1H3B histone cluster 1, H3b -1.48
AHCY adenosylhomocysteinase -1.47869
PPID peptidylprolyl isomerase D -1.4754
OCM oncomodulin -1.46884
LARP4B La ribonucleoprotein domain family, member 4B -1.46312
IL23A interleukin 23, alpha subunit p19 -1.45984
PPM1H protein phosphatase, Mg2+/Mn2+ dependent, 1H -1.45642
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -1.45002
NOLC1 nucleolar and coiled-body phosphoprotein 1 -1.44803
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 -1.44125
DOK2 docking protein 2, 56kDa -1.441
DCAF7 DDB1 and CUL4 associated factor 7 -1.44084
ATF7 activating transcription factor 7 -1.43805
RECQL5 RecQ protein-like 5 -1.43732
RNF40 ring finger protein 40, E3 ubiquitin protein ligase -1.43656
CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase -1.43568
TSPAN32 tetraspanin 32 -1.43045
PDCD11 programmed cell death 11 -1.42645
FGF6 fibroblast growth factor 6 -1.41834
RPL22 ribosomal protein L22 -1.41756
POLR1D polymerase (RNA) I polypeptide D, 16kDa -1.41738