DT-061_SNU-423 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description DT-061 perturbation in SNU-423 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the DT-061_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.112875
CD44 CD44 molecule (Indian blood group) 0.112435
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.106951
NAMPT nicotinamide phosphoribosyltransferase 0.100876
STC1 stanniocalcin 1 0.0992725
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0912157
HDAC9 histone deacetylase 9 0.0696552
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0681101
ELL2 elongation factor, RNA polymerase II, 2 0.0645721
JMJD1C jumonji domain containing 1C 0.0622146
FNDC3B fibronectin type III domain containing 3B 0.0592797
KYNU kynureninase 0.0560458
PGK1 phosphoglycerate kinase 1 0.0516674
ZBTB38 zinc finger and BTB domain containing 38 0.0511469
GPC6 glypican 6 0.0500112
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0480298
NAV2 neuron navigator 2 0.047261
ARRDC3 arrestin domain containing 3 0.0462965
PNRC1 proline-rich nuclear receptor coactivator 1 0.0460694
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0445282
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0443024
ANXA2 annexin A2 0.0439751
BASP1 brain abundant, membrane attached signal protein 1 0.0438261
SNX9 sorting nexin 9 0.0435001
RUNX1 runt-related transcription factor 1 0.0432623
EDIL3 EGF-like repeats and discoidin I-like domains 3 0.0431907
ZNF292 zinc finger protein 292 0.042707
TMSB4X thymosin beta 4, X-linked 0.0423396
SOD2 superoxide dismutase 2, mitochondrial 0.0419699
UBC ubiquitin C 0.0418546
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0412854
SFTPA2 surfactant protein A2 0.0410313
HLA-E major histocompatibility complex, class I, E 0.0402743
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.039677
TRIO trio Rho guanine nucleotide exchange factor 0.0393901
MXI1 MAX interactor 1, dimerization protein 0.0393445
ERRFI1 ERBB receptor feedback inhibitor 1 0.0392987
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0391676
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0390722
AHNAK AHNAK nucleoprotein 0.0385161
SMAD3 SMAD family member 3 0.038157
RND3 Rho family GTPase 3 0.0376716
UGCG UDP-glucose ceramide glucosyltransferase 0.0374984
FNIP1 folliculin interacting protein 1 0.0372462
MACF1 microtubule-actin crosslinking factor 1 0.0364099
VCAN versican 0.0362698
CDCP1 CUB domain containing protein 1 0.0357188
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0351553
OGA O-GlcNAcase 0.0349776
EEF2 eukaryotic translation elongation factor 2 0.0347863
VIM vimentin 0.0347524
PPARD peroxisome proliferator-activated receptor delta 0.034691
APP amyloid beta (A4) precursor protein 0.0344458
RB1CC1 RB1-inducible coiled-coil 1 0.0342118
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.03399
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0337322
SPAG9 sperm associated antigen 9 0.0337282
LDHA lactate dehydrogenase A 0.0335147
ZMYND8 zinc finger, MYND-type containing 8 0.0329824
FTH1 ferritin, heavy polypeptide 1 0.0327603
OSBPL8 oxysterol binding protein-like 8 0.032666
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0325104
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0324574
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0316584
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0312977
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0312574
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.0312223
ARFGEF3 ARFGEF family member 3 0.0310713
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0301005
ZSWIM6 zinc finger, SWIM-type containing 6 0.0291337
TXNIP thioredoxin interacting protein 0.02897
IL6ST interleukin 6 signal transducer 0.0281797
KDM2A lysine (K)-specific demethylase 2A 0.0276316
AKAP9 A kinase (PRKA) anchor protein 9 0.0273639
PHF21A PHD finger protein 21A 0.0272977
PTK2 protein tyrosine kinase 2 0.0272341
CTSB cathepsin B 0.0270736
FMNL2 formin-like 2 0.0270711
SFRP1 secreted frizzled-related protein 1 0.0269701
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0269362
IRAK2 interleukin-1 receptor-associated kinase 2 0.0269199
LAMP2 lysosomal-associated membrane protein 2 0.0268349
NPEPPS aminopeptidase puromycin sensitive 0.0267435
SQSTM1 sequestosome 1 0.0265076
IQGAP1 IQ motif containing GTPase activating protein 1 0.0264229
RNF24 ring finger protein 24 0.0263823
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0261865
CDK19 cyclin-dependent kinase 19 0.0259468
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0259257
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0258318
TENT5A terminal nucleotidyltransferase 5A 0.0257518
SDC4 syndecan 4 0.02574
MBNL2 muscleblind-like splicing regulator 2 0.0257001
RHOBTB3 Rho-related BTB domain containing 3 0.0254881
CUL4B cullin 4B 0.0252034
NRIP1 nuclear receptor interacting protein 1 0.0248798
FOXO3 forkhead box O3 0.0248327
LOC112694756 uncharaterized LOC112694756 0.0246959
COL6A3 collagen, type VI, alpha 3 0.0245847
MKI67 marker of proliferation Ki-67 0.0244907

decreased expression

Symbol Name Standardized Value
FRMD4A FERM domain containing 4A -0.111015
RPL37A ribosomal protein L37a -0.0738318
TMSB10 thymosin beta 10 -0.069997
HLA-B major histocompatibility complex, class I, B -0.0688451
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0592913
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0588749
RPS12 ribosomal protein S12 -0.0583507
FTL ferritin, light polypeptide -0.0528374
RPLP2 ribosomal protein, large, P2 -0.0430136
TPT1 tumor protein, translationally-controlled 1 -0.0413397
RPS23 ribosomal protein S23 -0.0402559
IFI6 interferon, alpha-inducible protein 6 -0.0394632
RPS3 ribosomal protein S3 -0.0389471
VCL vinculin -0.0371574
IFITM3 interferon induced transmembrane protein 3 -0.0365105
RPS29 ribosomal protein S29 -0.0340581
RPL9 ribosomal protein L9 -0.033852
ACTG1 actin gamma 1 -0.0329977
RPS13 ribosomal protein S13 -0.0326185
SLC38A2 solute carrier family 38, member 2 -0.0295507
SDK1 sidekick cell adhesion molecule 1 -0.0294848
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0278677
COL1A1 collagen, type I, alpha 1 -0.0269859
ISG15 ISG15 ubiquitin-like modifier -0.0262211
RPS10 ribosomal protein S10 -0.0249214
PTPRK protein tyrosine phosphatase, receptor type, K -0.0247609
RPL31 ribosomal protein L31 -0.0239762
FLNA filamin A, alpha -0.0238022
NABP1 nucleic acid binding protein 1 -0.0237485
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.0237246
CTSD cathepsin D -0.0233775
RPS19 ribosomal protein S19 -0.0232218
RPS8 ribosomal protein S8 -0.0227102
TGFBI transforming growth factor, beta-induced, 68kDa -0.022073
RPS27A ribosomal protein S27a -0.0220016
BICC1 BicC family RNA binding protein 1 -0.020861
ENO2 enolase 2 (gamma, neuronal) -0.0200709
WSB1 WD repeat and SOCS box containing 1 -0.0198227
TPM1 tropomyosin 1 (alpha) -0.0196905
COL5A1 collagen, type V, alpha 1 -0.0195071
RPL11 ribosomal protein L11 -0.0191361
RPS17 ribosomal protein S17 -0.019007
RPL36 ribosomal protein L36 -0.0189322
SOX5 SRY (sex determining region Y)-box 5 -0.0188832
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0188391
RPL7A ribosomal protein L7a -0.0186355
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0182527
IFITM1 interferon induced transmembrane protein 1 -0.0181229
PRKG1 protein kinase, cGMP-dependent, type I -0.0180977
PALLD palladin, cytoskeletal associated protein -0.0179215
RPS24 ribosomal protein S24 -0.0175796
RPL38 ribosomal protein L38 -0.0174355
COL6A2 collagen, type VI, alpha 2 -0.0172025
TENM2 teneurin transmembrane protein 2 -0.0169191
CALR calreticulin -0.0168565
NCOR2 nuclear receptor corepressor 2 -0.0166113
FRMPD4 FERM and PDZ domain containing 4 -0.0163916
COL7A1 collagen, type VII, alpha 1 -0.0161767
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 -0.0161721
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0156764
COL6A1 collagen, type VI, alpha 1 -0.0155405
RPS25 ribosomal protein S25 -0.0153691
DHFR dihydrofolate reductase -0.0152879
ARF4 ADP-ribosylation factor 4 -0.0152249
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0150872
RPL26 ribosomal protein L26 -0.014962
INTS6 integrator complex subunit 6 -0.014723
OGT O-linked N-acetylglucosamine (GlcNAc) transferase -0.0147129
RPL28 ribosomal protein L28 -0.0143678
RAD51B RAD51 paralog B -0.0143343
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0142764
TMEM132D transmembrane protein 132D -0.0141639
NCKAP5 NCK-associated protein 5 -0.0140105
RNF213 ring finger protein 213 -0.0138039
RPS11 ribosomal protein S11 -0.0137604
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.01352
HMGA1 high mobility group AT-hook 1 -0.0135034
CADM1 cell adhesion molecule 1 -0.0134944
PCBP2 poly(rC) binding protein 2 -0.0134666
RPL36A ribosomal protein L36a -0.0133392
RPL19 ribosomal protein L19 -0.0133221
PDLIM5 PDZ and LIM domain 5 -0.0131151
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein -0.0130555
PLXNA3 plexin A3 -0.0128056
TENM3 teneurin transmembrane protein 3 -0.0127539
AFF3 AF4/FMR2 family, member 3 -0.0126637
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0121786
IER3 immediate early response 3 -0.0120561
RPL27 ribosomal protein L27 -0.0120511
MAML2 mastermind-like 2 (Drosophila) -0.0120165
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0119621
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 -0.0119211
WDR27 WD repeat domain 27 -0.0118742
STC2 stanniocalcin 2 -0.0118069
EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa -0.011798
EXOC4 exocyst complex component 4 -0.0116965
PFKP phosphofructokinase, platelet -0.0116754
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 -0.0116674
WDR1 WD repeat domain 1 -0.0113966
RBM39 RNA binding motif protein 39 -0.0113926