Dabrafenib_CHP-212 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dabrafenib perturbation in CHP-212 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dabrafenib_CHP-212 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VCL vinculin 0.163059
CEMIP cell migration inducing protein, hyaluronan binding 0.146792
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.119702
AKAP12 A kinase (PRKA) anchor protein 12 0.115077
TLE4 transducin-like enhancer of split 4 0.114639
EXT1 exostosin glycosyltransferase 1 0.111888
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0919327
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 0.0870519
ZSWIM6 zinc finger, SWIM-type containing 6 0.0771092
MACF1 microtubule-actin crosslinking factor 1 0.0742285
VIM vimentin 0.0731032
MYH9 myosin, heavy chain 9, non-muscle 0.0727864
NPAS2 neuronal PAS domain protein 2 0.0717316
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.071112
MCL1 myeloid cell leukemia 1 0.0707114
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0706626
FMN1 formin 1 0.0677095
SEPTIN9 septin 9 0.0675375
STC1 stanniocalcin 1 0.0618512
VMP1 vacuole membrane protein 1 0.0585555
TPM1 tropomyosin 1 (alpha) 0.0580312
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0570621
FERMT2 fermitin family member 2 0.0568902
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0540503
FLT1 fms-related tyrosine kinase 1 0.0529532
PLAT plasminogen activator, tissue 0.052093
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0516506
IGFBP3 insulin-like growth factor binding protein 3 0.0514254
PTPRE protein tyrosine phosphatase, receptor type, E 0.0511011
VGF VGF nerve growth factor inducible 0.0494188
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0454382
GLCCI1 glucocorticoid induced 1 0.0440685
PDLIM5 PDZ and LIM domain 5 0.0438306
PCBP2 poly(rC) binding protein 2 0.0432887
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0424831
RPL19 ribosomal protein L19 0.0417962
SLIT2 slit homolog 2 (Drosophila) 0.0412043
TOP1 topoisomerase (DNA) I 0.0410441
CTNND1 catenin (cadherin-associated protein), delta 1 0.0395182
CSNK1A1 casein kinase 1, alpha 1 0.0379523
TIMP2 TIMP metallopeptidase inhibitor 2 0.0378543
LIMA1 LIM domain and actin binding 1 0.0377318
EIF1 eukaryotic translation initiation factor 1 0.0366454
ITPRID2 ITPR interacting domain containing 2 0.0366103
AFF3 AF4/FMR2 family, member 3 0.036387
TIMP3 TIMP metallopeptidase inhibitor 3 0.0357577
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0357299
FNDC3B fibronectin type III domain containing 3B 0.0357238
EEF1G eukaryotic translation elongation factor 1 gamma 0.0355043
PACS1 phosphofurin acidic cluster sorting protein 1 0.0354374
FNDC3A fibronectin type III domain containing 3A 0.0354173
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.034813
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.0347193
HMGA2 high mobility group AT-hook 2 0.0346352
MYO1E myosin IE 0.0342943
ZMIZ1 zinc finger, MIZ-type containing 1 0.0342687
ANGPTL4 angiopoietin-like 4 0.033565
AEBP2 AE binding protein 2 0.0335267
CDH13 cadherin 13 0.0331429
SMAD3 SMAD family member 3 0.0327342
BICD1 bicaudal D homolog 1 (Drosophila) 0.0325314
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.0322502
HPCAL1 hippocalcin-like 1 0.0315594
DST dystonin 0.0311505
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0309474
EEF2 eukaryotic translation elongation factor 2 0.0307552
SETBP1 SET binding protein 1 0.0304892
RPTOR regulatory associated protein of MTOR, complex 1 0.0302298
RAP1B RAP1B, member of RAS oncogene family 0.0298019
LOXL2 lysyl oxidase-like 2 0.0292913
AMOTL1 angiomotin like 1 0.0290252
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0290154
PDE3A phosphodiesterase 3A, cGMP-inhibited 0.0290153
PDE10A phosphodiesterase 10A 0.0289236
TPR translocated promoter region, nuclear basket protein 0.0285174
GPBP1 GC-rich promoter binding protein 1 0.0280054
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0278934
SLITRK6 SLIT and NTRK-like family, member 6 0.0276291
ACTN1 actinin, alpha 1 0.027594
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0270785
MED13 mediator complex subunit 13 0.0270671
ACLY ATP citrate lyase 0.0267781
FLNB filamin B, beta 0.0267694
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0266584
HOMER1 homer scaffolding protein 1 0.0262171
CCDC57 coiled-coil domain containing 57 0.0262005
RPS12 ribosomal protein S12 0.0257826
RCOR1 REST corepressor 1 0.025407
FHL2 four and a half LIM domains 2 0.0251666
KDM2A lysine (K)-specific demethylase 2A 0.0250551
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0249791
TPM4 tropomyosin 4 0.0247441
INTS6 integrator complex subunit 6 0.024467
ANTXR1 anthrax toxin receptor 1 0.0242835
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0242311
RPL7 ribosomal protein L7 0.0240867
SYNPO2 synaptopodin 2 0.0240107
HSPA8 heat shock 70kDa protein 8 0.0239239
GAB2 GRB2-associated binding protein 2 0.0237802
SMG6 SMG6 nonsense mediated mRNA decay factor 0.0231009

decreased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 -0.279593
LSAMP limbic system-associated membrane protein -0.115453
COL1A1 collagen, type I, alpha 1 -0.106061
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.101927
MEIS2 Meis homeobox 2 -0.0966535
PTMA prothymosin, alpha -0.0812913
SYT1 synaptotagmin I -0.0750535
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0551255
NCAM2 neural cell adhesion molecule 2 -0.0489996
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0486571
RPL38 ribosomal protein L38 -0.0481121
LPIN1 lipin 1 -0.0467071
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0459166
COL3A1 collagen, type III, alpha 1 -0.0459028
RPS24 ribosomal protein S24 -0.0458406
CDH10 cadherin 10, type 2 (T2-cadherin) -0.0457677
NPEPPS aminopeptidase puromycin sensitive -0.0432817
RPL34 ribosomal protein L34 -0.0394658
TMSB10 thymosin beta 10 -0.0386907
HAND2 heart and neural crest derivatives expressed 2 -0.0385582
CRH corticotropin releasing hormone -0.0379395
RPL35A ribosomal protein L35a -0.0376087
GNAS GNAS complex locus -0.0344927
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0338296
SOS1 son of sevenless homolog 1 (Drosophila) -0.0338002
RPS6 ribosomal protein S6 -0.0329695
CD36 CD36 molecule (thrombospondin receptor) -0.0324781
NREP neuronal regeneration related protein -0.0319181
RPLP1 ribosomal protein, large, P1 -0.0310831
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0307067
CADM2 cell adhesion molecule 2 -0.0300265
WDR45B WD repeat domain 45B -0.0298113
ZNF804A zinc finger protein 804A -0.0297611
TENT5A terminal nucleotidyltransferase 5A -0.0292891
AHNAK AHNAK nucleoprotein -0.0292504
TPT1 tumor protein, translationally-controlled 1 -0.0291578
H3-3B H3.3 histone B -0.0290829
FNBP1 formin binding protein 1 -0.0286134
RPL23 ribosomal protein L23 -0.0284824
S100A9 S100 calcium binding protein A9 -0.028267
MAP1B microtubule-associated protein 1B -0.0272677
PCDH9 protocadherin 9 -0.0264525
SEPTIN2 septin 2 -0.0259329
RPS21 ribosomal protein S21 -0.0258375
RPL32 ribosomal protein L32 -0.0252189
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0242843
PTPRD protein tyrosine phosphatase, receptor type, D -0.0237557
MATR3 matrin 3 -0.0226015
FHIT fragile histidine triad -0.0225775
USP3 ubiquitin specific peptidase 3 -0.0223373
FRMD4A FERM domain containing 4A -0.0215236
WSB1 WD repeat and SOCS box containing 1 -0.0213445
TAS2R14 taste receptor, type 2, member 14 -0.0206792
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0205214
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.0202706
NCOR1 nuclear receptor corepressor 1 -0.0200077
PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) -0.0198492
IER3 immediate early response 3 -0.0196615
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0194281
FOXK2 forkhead box K2 -0.0192991
ACTG1 actin gamma 1 -0.0192501
KPNB1 karyopherin (importin) beta 1 -0.0190482
SCN9A sodium channel, voltage gated, type IX alpha subunit -0.0189848
AOPEP aminopeptidase O (putative) -0.0185459
RAD21 RAD21 homolog (S. pombe) -0.0182855
ZNF292 zinc finger protein 292 -0.0178418
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0177487
RFC3 replication factor C (activator 1) 3, 38kDa -0.0174225
RBM20 RNA binding motif protein 20 -0.0173603
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0173108
ANGPT1 angiopoietin 1 -0.0172553
LCORL ligand dependent nuclear receptor corepressor-like -0.0171502
RPS27A ribosomal protein S27a -0.0170983
RFX7 regulatory factor X, 7 -0.0170473
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0169771
ARHGAP24 Rho GTPase activating protein 24 -0.0169664
MDK midkine (neurite growth-promoting factor 2) -0.0166421
LMNA lamin A/C -0.0166295
EYA1 EYA transcriptional coactivator and phosphatase 1 -0.016592
SCLT1 sodium channel and clathrin linker 1 -0.0165553
NEK7 NIMA-related kinase 7 -0.0165424
CDC27 cell division cycle 27 -0.0165192
PNISR PNN-interacting serine/arginine-rich protein -0.0163057
PHACTR2 phosphatase and actin regulator 2 -0.0161848
RPS19 ribosomal protein S19 -0.0161732
PHOX2B paired-like homeobox 2b -0.0161174
IFI16 interferon, gamma-inducible protein 16 -0.016076
GNA13 guanine nucleotide binding protein (G protein), alpha 13 -0.016042
TULP4 tubby like protein 4 -0.0160162
ADGRG6 adhesion G protein-coupled receptor G6 -0.0160008
NAMPT nicotinamide phosphoribosyltransferase -0.0158761
PLCB4 phospholipase C, beta 4 -0.0157699
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0157628
CENPF centromere protein F, 350/400kDa -0.0157323
C1ORF21 chromosome 1 open reading frame 21 -0.0157144
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0156201
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0154542
DLC1 DLC1 Rho GTPase activating protein -0.0154324
ZMYM2 zinc finger, MYM-type 2 -0.01543
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.015273