Dabrafenib_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dabrafenib perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dabrafenib_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.172453
TMSB4X thymosin beta 4, X-linked 0.161194
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.153121
VCL vinculin 0.127717
EEF2 eukaryotic translation elongation factor 2 0.126654
EZR ezrin 0.123409
MINDY2 MINDY lysine 48 deubiquitinase 2 0.119616
FLNB filamin B, beta 0.116892
PKM pyruvate kinase, muscle 0.114901
ADAM10 ADAM metallopeptidase domain 10 0.10868
EGFR epidermal growth factor receptor 0.0950948
TJP1 tight junction protein 1 0.0930466
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0882123
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0823312
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0694534
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0693106
AHNAK AHNAK nucleoprotein 0.0664213
ANXA1 annexin A1 0.063838
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0595702
DUSP4 dual specificity phosphatase 4 0.0592486
SOX6 SRY (sex determining region Y)-box 6 0.0591941
EML4 echinoderm microtubule associated protein like 4 0.0581259
PDE4B phosphodiesterase 4B, cAMP-specific 0.0568915
NCEH1 neutral cholesterol ester hydrolase 1 0.0565865
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0562859
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0554359
PYGB phosphorylase, glycogen; brain 0.0542665
HDAC9 histone deacetylase 9 0.0532085
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0510163
HSPA8 heat shock 70kDa protein 8 0.0509427
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0502001
LDHA lactate dehydrogenase A 0.0501523
EEF1G eukaryotic translation elongation factor 1 gamma 0.0491996
RPL7 ribosomal protein L7 0.0488908
LOXL3 lysyl oxidase-like 3 0.048496
PABPC1 poly(A) binding protein, cytoplasmic 1 0.046493
ZBTB38 zinc finger and BTB domain containing 38 0.0457388
ECT2 epithelial cell transforming 2 0.0451513
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0451046
RPL3 ribosomal protein L3 0.0445167
ZEB1 zinc finger E-box binding homeobox 1 0.0438293
TXNRD1 thioredoxin reductase 1 0.0437307
MYO5C myosin VC 0.0435033
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0430873
PDGFC platelet derived growth factor C 0.04291
LOC112694756 uncharaterized LOC112694756 0.0424723
IQGAP1 IQ motif containing GTPase activating protein 1 0.0423209
PRPF38B pre-mRNA processing factor 38B 0.0413147
TGFBR3 transforming growth factor, beta receptor III 0.0410645
SOX9 SRY (sex determining region Y)-box 9 0.0407081
FER1L6 fer-1-like family member 6 0.0403285
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0401825
MYOF myoferlin 0.0393459
ATP9B ATPase, class II, type 9B 0.0389321
ENO1 enolase 1, (alpha) 0.0388504
DUSP6 dual specificity phosphatase 6 0.0388074
MACF1 microtubule-actin crosslinking factor 1 0.03853
RPL19 ribosomal protein L19 0.0384758
TACC2 transforming, acidic coiled-coil containing protein 2 0.0383993
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0368828
HDLBP high density lipoprotein binding protein 0.036196
RPL4 ribosomal protein L4 0.0357852
MKI67 marker of proliferation Ki-67 0.0354302
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0348499
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.034498
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.0344509
EIF4A2 eukaryotic translation initiation factor 4A2 0.0343986
HJURP Holliday junction recognition protein 0.033779
FAM91A1 family with sequence similarity 91, member A1 0.0334768
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.0334311
MYH9 myosin, heavy chain 9, non-muscle 0.0332057
ARHGAP25 Rho GTPase activating protein 25 0.0331008
ZNF608 zinc finger protein 608 0.0330066
HSPH1 heat shock 105kDa/110kDa protein 1 0.0326207
SQSTM1 sequestosome 1 0.0324857
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0324749
PGK1 phosphoglycerate kinase 1 0.0320062
FBLN2 fibulin 2 0.0317279
FAT1 FAT atypical cadherin 1 0.0315511
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0308268
EIF1 eukaryotic translation initiation factor 1 0.0304134
AMOTL2 angiomotin like 2 0.0298862
PICALM phosphatidylinositol binding clathrin assembly protein 0.0292246
SEPTIN9 septin 9 0.0292059
ANLN anillin, actin binding protein 0.0291588
NFE2L2 nuclear factor, erythroid 2-like 2 0.0288254
TRIP12 thyroid hormone receptor interactor 12 0.0286845
CSDE1 cold shock domain containing E1, RNA-binding 0.0285362
RTN4 reticulon 4 0.0284326
KIF5B kinesin family member 5B 0.0281738
EIF4B eukaryotic translation initiation factor 4B 0.0277364
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0276112
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.0274892
PLK2 polo-like kinase 2 0.0271073
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 0.0268607
BMP2K BMP2 inducible kinase 0.0265027
NAP1L1 nucleosome assembly protein 1-like 1 0.0259664
CORO1C coronin, actin binding protein, 1C 0.0258476
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.0257231
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0257001

decreased expression

Symbol Name Standardized Value
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.110334
RPS6 ribosomal protein S6 -0.0841852
RPL35A ribosomal protein L35a -0.0805235
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0780999
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0670002
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0641378
TPT1 tumor protein, translationally-controlled 1 -0.0555786
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0546009
RPL31 ribosomal protein L31 -0.0484192
RPL9 ribosomal protein L9 -0.0457826
RPL37A ribosomal protein L37a -0.0444344
WSB1 WD repeat and SOCS box containing 1 -0.0433893
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 -0.0426049
VIM vimentin -0.0423035
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0420429
RPS19 ribosomal protein S19 -0.0398284
TMSB10 thymosin beta 10 -0.0383394
PNISR PNN-interacting serine/arginine-rich protein -0.0370242
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0366219
FTL ferritin, light polypeptide -0.0350655
PFN1 profilin 1 -0.0337185
RPLP2 ribosomal protein, large, P2 -0.0327653
ENOX1 ecto-NOX disulfide-thiol exchanger 1 -0.0324974
RPS13 ribosomal protein S13 -0.0324041
NFIA nuclear factor I/A -0.0322142
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0321653
FUS FUS RNA binding protein -0.0321377
S100A9 S100 calcium binding protein A9 -0.0313403
RPS27A ribosomal protein S27a -0.0295258
FHIT fragile histidine triad -0.0294134
HLA-B major histocompatibility complex, class I, B -0.0286892
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b -0.0279538
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0275685
PDE10A phosphodiesterase 10A -0.0272865
RPS29 ribosomal protein S29 -0.027191
RPS21 ribosomal protein S21 -0.0266244
RPS3 ribosomal protein S3 -0.0265376
GNAS GNAS complex locus -0.0263349
TUT4 terminal uridylyl transferase 4 -0.0256608
POTEF POTE ankyrin domain family, member F -0.0254106
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0253421
CAMKMT calmodulin-lysine N-methyltransferase -0.0250984
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0249339
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0242695
EVI5 ecotropic viral integration site 5 -0.023508
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0232969
ANKRD12 ankyrin repeat domain 12 -0.023014
RPL36 ribosomal protein L36 -0.0228335
DLG1 discs, large homolog 1 (Drosophila) -0.0224337
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0223393
NDRG1 N-myc downstream regulated 1 -0.0223357
MT2A metallothionein 2A -0.0223332
ACTG1 actin gamma 1 -0.0217881
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0217641
RPLP1 ribosomal protein, large, P1 -0.0217422
PATJ PATJ crumbs cell polarity complex component -0.0217318
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0216019
FKBP10 FK506 binding protein 10, 65 kDa -0.0212896
RPS14 ribosomal protein S14 -0.0207309
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0207168
RPS10 ribosomal protein S10 -0.0204995
RPL38 ribosomal protein L38 -0.0204371
TTC3 tetratricopeptide repeat domain 3 -0.0204293
RAD51B RAD51 paralog B -0.0201585
FN1 fibronectin 1 -0.0200699
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0198791
RPS15 ribosomal protein S15 -0.0198014
MON2 MON2 homolog (S. cerevisiae) -0.0197651
BCL2 B-cell CLL/lymphoma 2 -0.0194725
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 -0.019357
MSI2 musashi RNA-binding protein 2 -0.019305
WDR45B WD repeat domain 45B -0.0191668
RPL34 ribosomal protein L34 -0.0189487
UQCRB ubiquinol-cytochrome c reductase binding protein -0.0188481
APLF aprataxin and PNKP like factor -0.0188406
INTS6 integrator complex subunit 6 -0.0186609
TAS2R14 taste receptor, type 2, member 14 -0.0185439
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) -0.0183891
DENND4A DENN/MADD domain containing 4A -0.0180976
NEBL nebulette -0.0180912
RPS8 ribosomal protein S8 -0.018039
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0176228
EIF5B eukaryotic translation initiation factor 5B -0.0176135
RPS23 ribosomal protein S23 -0.0175029
SERF2 small EDRK-rich factor 2 -0.017424
IFITM3 interferon induced transmembrane protein 3 -0.0173802
ZCCHC7 zinc finger, CCHC domain containing 7 -0.017365
RPS25 ribosomal protein S25 -0.0171352
RPL23 ribosomal protein L23 -0.0169749
RPL11 ribosomal protein L11 -0.0169693
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0168833
NBEAL1 neurobeachin-like 1 -0.016788
COX4I1 cytochrome c oxidase subunit IV isoform 1 -0.0167232
THOC2 THO complex 2 -0.0165883
PMM2 phosphomannomutase 2 -0.0165369
RYR2 ryanodine receptor 2 (cardiac) -0.0163607
FAM193A family with sequence similarity 193, member A -0.0163377
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0162782
COX5B cytochrome c oxidase subunit Vb -0.0162022
UNC13A unc-13 homolog A (C. elegans) -0.0160763